View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10999_low_10 (Length: 250)
Name: NF10999_low_10
Description: NF10999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10999_low_10 |
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| [»] scaffold0244 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 825087 - 825292
Alignment:
| Q |
1 |
catcataccttagaacttgcactatttggaacgtttcaggcctacaatgtgagcttttgttatcaaaatatattttgaaaaatgccaaaaaattacaaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
825087 |
catcataccttagaacttgcactatttggaacgtttcaggcctacaatgtgagcttttgttatcaaaatatattttgaaaaatgccaaaaaattacaaac |
825186 |
T |
|
| Q |
101 |
catgacaatctggagcaaaggggaaccacttgaaatagaaagaaagttgtccccgtgcataaaggcatctgcaacatgtaaactttcagttcatagataa |
200 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
825187 |
catgacaatctggagcaaaggggaaccccttgaaatagaaagaaagttgtccccgtgcacaaaggcatctgcaacatgtaaactttcagttcatagataa |
825286 |
T |
|
| Q |
201 |
catata |
206 |
Q |
| |
|
|||||| |
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|
| T |
825287 |
catata |
825292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 64 - 187
Target Start/End: Complemental strand, 989550 - 989427
Alignment:
| Q |
64 |
caaaatatattttgaaaaatgccaaaaaattacaaaccatgacaatctggagcaaaggggaaccacttgaaatagaaagaaagttgtccccgtgcataaa |
163 |
Q |
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||||||||||||| |||||||| ||| | ||||||||||||||||| ||||||||| | ||||||| ||||||||||| ||||||||||| ||| || |
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| T |
989550 |
caaaatatattttaaaaaatgcaaaatatttacaaaccatgacaatttggagcaaaagagaaccacctgaaatagaaacgaagttgtccccatgcccgaa |
989451 |
T |
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| Q |
164 |
ggcatctgcaacatgtaaactttc |
187 |
Q |
| |
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||| |||||| ||||| ||||||| |
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| T |
989450 |
ggcctctgcatcatgtcaactttc |
989427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 14 - 145
Target Start/End: Original strand, 1006220 - 1006351
Alignment:
| Q |
14 |
aacttgcactatttggaacgtttcaggcctacaatgtgagcttttgttatcaaaatatattttgaaaaatgccaaaaaattacaaaccatgacaatctgg |
113 |
Q |
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||||||||||||| || || ||| | |||||||| |||||||| ||||| ||||||||||||||| |||| ||||| ||| ||| ||||||||| ||| |
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| T |
1006220 |
aacttgcactattcggtactttttaagcctacaaagtgagcttatgttagaaaaatatattttgaagaatggtaaaaatttagaaatcatgacaatttgg |
1006319 |
T |
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| Q |
114 |
agcaaaggggaaccacttgaaatagaaagaaa |
145 |
Q |
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|| || |||||| | ||||||||| ||||| |
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| T |
1006320 |
agtgaaagggaacaatctgaaatagagagaaa |
1006351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 202 - 239
Target Start/End: Original strand, 830459 - 830496
Alignment:
| Q |
202 |
atatagacaatgtaggcagtcgcttctttatccttctt |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
830459 |
atatagacaatgtaggcagtcgcttctttatccttctt |
830496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 67 - 191
Target Start/End: Complemental strand, 1011878 - 1011754
Alignment:
| Q |
67 |
aatatattttgaaaaatgccaaaaaattacaaaccatgacaatctggagcaaaggggaaccacttgaaatagaaagaaagttgtccccgtgcataaaggc |
166 |
Q |
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|||||||||||| |||||| |||| |||||||| ||||||||| | || || | || || || ||||||||| ||||||||||| ||| | ||||| |
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| T |
1011878 |
aatatattttgagaaatgcacaaaatttacaaactatgacaatcgagtgcgaatgtgagccgctgaaaatagaaataaagttgtcccaatgcctgaaggc |
1011779 |
T |
|
| Q |
167 |
atctgcaacatgtaaactttcagtt |
191 |
Q |
| |
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|||||||||||| ||||||||||| |
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| T |
1011778 |
ctctgcaacatgtcaactttcagtt |
1011754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0244 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0244
Description:
Target: scaffold0244; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 150
Target Start/End: Complemental strand, 5823 - 5675
Alignment:
| Q |
2 |
atcataccttagaacttgcactatttggaacgtttcaggcctacaatgtgagcttttgttatcaaaatatattttgaaaaatgccaaaaaattacaaacc |
101 |
Q |
| |
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||||| |||||||||||||||| || || || | ||||||||||||||||||||| |||| |||||||||||||||| ||| | | || ||| ||||| |
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| T |
5823 |
atcatcccttagaacttgcacttttggggacttctcaggcctacaatgtgagcttcagttagcaaaatatattttgaagaattcaagaattttagaaacc |
5724 |
T |
|
| Q |
102 |
atgacaatctggagcaaaggggaaccacttgaaatagaaagaaagttgt |
150 |
Q |
| |
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|||| || || |||||||||| || | ||||||||||||||| |||| |
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| T |
5723 |
atgaacatttgaagcaaagggggacaatctgaaatagaaagaaaattgt |
5675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 214
Target Start/End: Original strand, 22076581 - 22076793
Alignment:
| Q |
2 |
atcataccttagaacttgcactatttggaacgtttcaggcctacaatgtgagcttttgttatcaaaatatattttgaaaaatgccaaaaaattacaaacc |
101 |
Q |
| |
|
||||| ||||||||||||||||||| | || | |||||| ||| | ||||||| |||| |||||||||||||||| ||| | | || || ||| | |
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| T |
22076581 |
atcatgccttagaacttgcactattggagacttctcaggcttaccaattgagcttgggttagcaaaatatattttgaagaattcaagaactttggaaatc |
22076680 |
T |
|
| Q |
102 |
atgacaatctggagcaaaggggaaccacttgaaatagaaagaaagttgtccccgtgcataaaggcatctgcaacatgtaaactttcagttcatagataac |
201 |
Q |
| |
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||| || ||||||||| |||||| | ||||||||||||||| |||| | |||| ||||||| |||||||| ||| |||||| |||| ||||||| | |
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| T |
22076681 |
atggtcatttggagcaaaagggaacgagctgaaatagaaagaaaattgtttctgtgcctaaaggcttctgcaacgtgtgaacttttagtttatagatagc |
22076780 |
T |
|
| Q |
202 |
atatagacaatgt |
214 |
Q |
| |
|
||||||||||||| |
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| T |
22076781 |
atatagacaatgt |
22076793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 32247116 - 32247225
Alignment:
| Q |
1 |
catcataccttagaacttgcactatttggaa-cgtttc-aggcctacaatgtgagcttttgttatcaaaatatattttgaaaaatgccaaaaaattacaa |
98 |
Q |
| |
|
|||||||||||||||||||||| || ||| |||||| || ||||||| |||||||| ||||| |||||||||||||||| ||||| | || |||||| |
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| T |
32247116 |
catcataccttagaacttgcacaat--ggatgcgtttccagacctacaaagtgagcttatgttagcaaaatatattttgaagaatgcaagaatgttacaa |
32247213 |
T |
|
| Q |
99 |
accatgacaatc |
110 |
Q |
| |
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| ||||| |||| |
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|
| T |
32247214 |
atcatgaaaatc |
32247225 |
T |
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