View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10999_low_13 (Length: 238)

Name: NF10999_low_13
Description: NF10999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10999_low_13
NF10999_low_13
[»] chr2 (8 HSPs)
chr2 (1-210)||(824782-824991)
chr2 (59-223)||(989773-989937)
chr2 (31-113)||(410248-410333)
chr2 (140-223)||(1012172-1012255)
chr2 (31-108)||(821147-821227)
chr2 (150-220)||(1043989-1044059)
chr2 (57-108)||(965481-965532)
chr2 (31-172)||(1024900-1025040)
[»] scaffold0244 (1 HSPs)
scaffold0244 (113-210)||(6036-6133)
[»] chr6 (1 HSPs)
chr6 (57-113)||(10116763-10116819)
[»] chr7 (1 HSPs)
chr7 (147-216)||(32246796-32246865)
[»] chr5 (1 HSPs)
chr5 (31-108)||(36199114-36199190)


Alignment Details
Target: chr2 (Bit Score: 181; Significance: 6e-98; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 824991 - 824782
Alignment:
Q  1 agcacattgcggctgtactaccnnnnnnntataaaccaaatacgattcttaaacttaaacaaacccgataaagttcaagattctgaagcttagggaagtg 100  Q
    ||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  824991 agcacattgcggctgtactaccaaaaaaagataaaccaaatacgattcttaaacttaaacaaacccgataaagttcaagattctgaagcttagggaagtg 824892  T
Q  101 gtggagcagttgtgctaccaaatccaatacatagtggagctccaggtgggtcaaattatgaaaggtaggaatgtcatcataagggcgctgtggttgattc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  824891 gtggagcagttgtgctaccaaatccaatacatagtggagctccaggtgggtcaaattatgaaaggtaggaatgtcatcataagggcgttgtggttgattc 824792  T
Q  201 acctaaatta 210  Q
    ||||||||||    
T  824791 acctaaatta 824782  T

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Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 59 - 223
Target Start/End: Original strand, 989773 - 989937
Alignment:
Q  59 acaaacccgataaagttcaagattctgaagcttagggaagtggtggagcagttgtgctaccaaatccaatacatagtggagctccaggtgggtcaaatta 158  Q
    ||||||| |||||||||  ||||| |||||||||||| |||||||||||| |||| ||||||||||| |   || || |||||||| |||||||||||||    
T  989773 acaaacctgataaagttggagattttgaagcttagggcagtggtggagcacttgtactaccaaatcccaattattgtagagctccaagtgggtcaaatta 989872  T
Q  159 tgaaaggtaggaatgtcatcataagggcgctgtggttgattcacctaaattatgtagaaagacac 223  Q
    |||||  | ||||||||| || ||||||||||  | | |||  ||||||||||||| ||||||||    
T  989873 tgaaacatgggaatgtcaacacaagggcgctgcagcttatttgcctaaattatgtacaaagacac 989937  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 113
Target Start/End: Complemental strand, 410333 - 410248
Alignment:
Q  31 ataaaccaaatacgattcttaaacttaa---acaaacccgataaagttcaagattctgaagcttagggaagtggtggagcagttgt 113  Q
    ||||| |||||| |||||||||| ||||   |||||||||||||||||||||||| |||||||||||| | |||||||||| ||||    
T  410333 ataaatcaaatatgattcttaaatttaacaaacaaacccgataaagttcaagattttgaagcttagggcaatggtggagcacttgt 410248  T

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Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 140 - 223
Target Start/End: Original strand, 1012172 - 1012255
Alignment:
Q  140 ctccaggtgggtcaaattatgaaaggtaggaatgtcatcataagggcgctgtggttgattcacctaaattatgtagaaagacac 223  Q
    ||||| ||||||||||||||||||| ||  |||||||||||||||| ||||| |  ||||||||||||| ||||| ||||||||    
T  1012172 ctccaagtgggtcaaattatgaaagatataaatgtcatcataagggagctgtagccgattcacctaaataatgtaaaaagacac 1012255  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 31 - 108
Target Start/End: Complemental strand, 821227 - 821147
Alignment:
Q  31 ataaaccaaatacgattcttaaacttaaa---caaacccgataaagttcaagattctgaagcttagggaagtggtggagca 108  Q
    ||||| |||||| |||||||||||||||    |||||| |||||||||||||||| |||||||||||| | ||||||||||    
T  821227 ataaatcaaataggattcttaaacttaacaagcaaacctgataaagttcaagattttgaagcttagggcaatggtggagca 821147  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 150 - 220
Target Start/End: Complemental strand, 1044059 - 1043989
Alignment:
Q  150 gtcaaattatgaaaggtaggaatgtcatcataagggcgctgtggttgattcacctaaattatgtagaaaga 220  Q
    ||||||||| ||||| ||  ||||||||||||||| |||||    ||||||||||||||||||||||||||    
T  1044059 gtcaaattacgaaagatataaatgtcatcataaggacgctgcaactgattcacctaaattatgtagaaaga 1043989  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 108
Target Start/End: Original strand, 965481 - 965532
Alignment:
Q  57 aaacaaacccgataaagttcaagattctgaagcttagggaagtggtggagca 108  Q
    ||||||||| |||||||||||||||| |||||||||||| | || |||||||    
T  965481 aaacaaacctgataaagttcaagattttgaagcttagggcaatgatggagca 965532  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 172
Target Start/End: Original strand, 1024900 - 1025040
Alignment:
Q  31 ataaaccaaatacgattcttaaacttaaacaaacccgataaagttcaagattctgaagcttagggaagtggtggagcagttgtgctaccaaatccaatac 130  Q
    |||||||||||| ||||||||||||| ||||||||   |||| ||  ||||| |||||||||||| ||||||| || | ||||  || ||||| | |       
T  1024900 ataaaccaaatatgattcttaaactt-aacaaacctcgtaaattttgagattttgaagcttagggcagtggtgaagaacttgtaatatcaaatgccaact 1024998  T
Q  131 atagtggagctccaggtgggtcaaattatgaaaggtaggaat 172  Q
     | ||||||||||| ||  ||||||||||||||| |||||||    
T  1024999 gttgtggagctccaagtatgtcaaattatgaaagataggaat 1025040  T

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Target: scaffold0244 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0244
Description:

Target: scaffold0244; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 210
Target Start/End: Original strand, 6036 - 6133
Alignment:
Q  113 tgctaccaaatccaatacatagtggagctccaggtgggtcaaattatgaaaggtaggaatgtcatcataagggcgctgtggttgattcacctaaatta 210  Q
    ||||||||||||| |   || |||||| |||| ||||||||||||||||||| ||| ||| ||| ||||||  |  ||||| ||||||||||||||||    
T  6036 tgctaccaaatcccaactattgtggagttccaagtgggtcaaattatgaaagatagaaatatcaccataagatccttgtggctgattcacctaaatta 6133  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 10116763 - 10116819
Alignment:
Q  57 aaacaaacccgataaagttcaagattctgaagcttagggaagtggtggagcagttgt 113  Q
    ||||||||| |||||||||||||||| ||||| |||||| | |||||||||| ||||    
T  10116763 aaacaaacctgataaagttcaagattttgaaggttagggcaatggtggagcacttgt 10116819  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 216
Target Start/End: Complemental strand, 32246865 - 32246796
Alignment:
Q  147 tgggtcaaattatgaaaggtaggaatgtcatcataagggcgctgtggttgattcacctaaattatgtaga 216  Q
    |||||||||||||||||  ||||||| ||||| |||||| | ||  |||||||| ||| |||||||||||    
T  32246865 tgggtcaaattatgaaaaataggaatatcatcgtaagggtgttgaagttgattcgcctgaattatgtaga 32246796  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 108
Target Start/End: Complemental strand, 36199190 - 36199114
Alignment:
Q  31 ataaaccaaatacgattcttaaacttaaacaaacccgataaagttcaagattctgaagcttagggaagtggtggagca 108  Q
    |||||| |||||| |||||||| ||||| |||||| | |||||||||||| | ||||| |||||| ||||||| ||||    
T  36199190 ataaactaaatacaattcttaatcttaa-caaacctggtaaagttcaagaatttgaagtttagggcagtggtgaagca 36199114  T

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