View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10999_low_14 (Length: 228)
Name: NF10999_low_14
Description: NF10999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10999_low_14 |
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| [»] chr2 (6 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 20019175 - 20018948
Alignment:
| Q |
1 |
tcaagatgacagtaacaaagtatgtttatcgattattttttatataaatatttggtttatgaatataatgtgctctgcacttgcaatataaaattttcgg |
100 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
20019175 |
tcaagatgacagtaacaaagtatgtttatcgattagtttttatataaatatttggtttatgaatataatgtgctctgcagttgcaatataaaattttcgg |
20019076 |
T |
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| Q |
101 |
caaaaaagtctaagtaaatcctttttgtggcaggattctcctttaagcaagaagcagaaatctaacatgattactgaggatggtaaaaatatggatattt |
200 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20019075 |
caaaaaagtctaattaaatcctttttgtggcaggattctcctttaagcaagaagcagaaatctaacatgattactgaggatggtaaaaatatggatattt |
20018976 |
T |
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| Q |
201 |
cttttgctatcttataataaaatttcat |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
20018975 |
cttttgctatcttataataaaatttcat |
20018948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 96 - 228
Target Start/End: Complemental strand, 20000280 - 20000145
Alignment:
| Q |
96 |
ttcggcaaaaaagtctaagtaaatcctttttgtggcaggattctcctttaagcaagaagcagaaatctaacatgattactgaggatggtaaaaatatgga |
195 |
Q |
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|||||||||||||||||| || ||||||| |||| ||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||| | |||||| |
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| T |
20000280 |
ttcggcaaaaaagtctaattacatcctttctgtgacaggattctcctttaagtaagaagcagaaatctaacataatttctgaggatggtaagattatgga |
20000181 |
T |
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| Q |
196 |
tatt--tcttttg-ctatcttataataaaatttcat |
228 |
Q |
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| T |
20000180 |
tttttctcttttgactatcatataataaaaattcat |
20000145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 20000352 - 20000285
Alignment:
| Q |
1 |
tcaagatgacagtaacaaagtatgtttatcgattattttttatataaatatttggtttatgaatataa |
68 |
Q |
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| T |
20000352 |
tcaagatgacagtaacaaagtatgtttatcgattattttttacataaatatgtggttgatgaatataa |
20000285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 20029233 - 20029185
Alignment:
| Q |
1 |
tcaagatgacagtaacaaagtatgtttatcgattattttttatataaat |
49 |
Q |
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| T |
20029233 |
tcaagatgatagtaacaaagtatgtttatcgattaatttttatataaat |
20029185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 205
Target Start/End: Complemental strand, 20009618 - 20009500
Alignment:
| Q |
86 |
atataaaattttcggcaaaaaagtctaagtaaatcctttttgtggcaggattctcctttaagcaagaagcagaaatctaacatgattactgaggatggta |
185 |
Q |
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||||||||||| || |||||| |||||| || ||||||| | | |||||||||||||||||| | |||| | | |||||||||||||| || ||||||| |
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| T |
20009618 |
atataaaattt-cgacaaaaatgtctaattacatcctttctttagcaggattctcctttaagtatgaagaaaagatctaacatgattattggtgatggta |
20009520 |
T |
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| Q |
186 |
aaaatatggatatttctttt |
205 |
Q |
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| T |
20009519 |
agattatcgatttttctttt |
20009500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 20009773 - 20009698
Alignment:
| Q |
1 |
tcaagatgacagtaacaaagtatgtttatcgattattttttatataaatatttggtttatgaatataatgtgctctgc |
78 |
Q |
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||||||||| |||||| |||||||||||||||| | |||| |||||| || ||||| |||||| ||||||| ||||| |
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| T |
20009773 |
tcaagatgatagtaacgaagtatgtttatcgataaattttcatataa--atgtggttgatgaatgtaatgtgttctgc |
20009698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 102 - 186
Target Start/End: Original strand, 12573376 - 12573460
Alignment:
| Q |
102 |
aaaaaagtctaagtaaatcctttttgtggcaggattctcctttaagcaagaagcagaaatctaacatgattactgaggatggtaa |
186 |
Q |
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|||||||||||| || ||||||| |||||||| |||||||||||| |||||||| ||||||||||||||||||| ||||||||| |
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| T |
12573376 |
aaaaaagtctaattacatcctttctgtggcagaattctcctttaactaagaagcataaatctaacatgattactgcggatggtaa |
12573460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 12573202 - 12573280
Alignment:
| Q |
1 |
tcaagatgacagtaacaaagtatgtttatcgatt-attttttatataaatatttggtttatgaatataatgtgctctgc |
78 |
Q |
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|||||||||||||||||||||||||| |||| || |||||||||||||| || ||| | |||||| ||| ||| ||||| |
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| T |
12573202 |
tcaagatgacagtaacaaagtatgttgatcgtttaattttttatataaaaatgtgggtgatgaatgtaacgtgttctgc |
12573280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 96 - 166
Target Start/End: Original strand, 19000216 - 19000286
Alignment:
| Q |
96 |
ttcggcaaaaaagtctaagtaaatcctttttgtggcaggattctcctttaagcaagaagcagaaatctaac |
166 |
Q |
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|||||||||||||||||| || ||| |||||||||||||||| ||||| ||| ||||| | ||||||||| |
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| T |
19000216 |
ttcggcaaaaaagtctaattatatcatttttgtggcaggattttccttcaagaaagaatctaaaatctaac |
19000286 |
T |
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