View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10999_low_2 (Length: 419)
Name: NF10999_low_2
Description: NF10999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10999_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 16017120 - 16016705
Alignment:
| Q |
1 |
ctaaattttctttgagaagattttgagcttgagcatggatcactttcaaggtttcgctgccaggaatctctggtggcaaattttcagtcacttcgctcaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
16017120 |
ctaaattttctttgagaagattttgagcttgagcatggatcactttcaaggtttcactgccgggaatctctggtggcaacttttcagtcacttcgctcaa |
16017021 |
T |
|
| Q |
101 |
ctaaacaacagaaaatgtagaagcaagtttagctatttagtatcacctacccgaaattgttcttaataatctttt-atttcacatcaggttcaagtatta |
199 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
16017020 |
ctaaacaacagcaaatgtagaagcaagtttagctatttagtatcaccaacccgaaattgttcttaataatcttttcatttcacatcaggttcaagtatta |
16016921 |
T |
|
| Q |
200 |
agatatttcatacaataaatctttggttcaagtgttaagctatttcattcaactaaaaacaatgaaggttcgtctgtcttcagagtaataattagtcaag |
299 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||| ||| ||||||||||||||||||||||||| |
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| T |
16016920 |
agatatttcatacaataagtctttggttcaagtgttaagctatttccttcaactaaaaacaataaaggtttgtcagtcttcagagtaataattagtcaag |
16016821 |
T |
|
| Q |
300 |
acattgtttcaagcaagcaagaattttatttgaaatagctaagttcaatcatgatgtcaaaatatagaaacaaaatacctcttctgttatagacttgatg |
399 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16016820 |
acattgtttcaagcaagcaagaattttatttgaaatggctaagttcaatcatgatgtcaaaatatagaaacaaaatacctcttctgttatagacttgatg |
16016721 |
T |
|
| Q |
400 |
aattcctttgcttctc |
415 |
Q |
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|||||||||||||||| |
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| T |
16016720 |
aattcctttgcttctc |
16016705 |
T |
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