View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10999_low_4 (Length: 403)

Name: NF10999_low_4
Description: NF10999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10999_low_4
NF10999_low_4
[»] chr6 (16 HSPs)
chr6 (1-403)||(31289552-31289939)
chr6 (10-311)||(26651948-26652255)
chr6 (10-311)||(26757916-26758223)
chr6 (32-262)||(27421174-27421403)
chr6 (325-403)||(26853957-26854035)
chr6 (325-403)||(27713873-27713951)
chr6 (334-403)||(27422333-27422402)
chr6 (325-403)||(26966399-26966477)
chr6 (342-395)||(26631762-26631815)
chr6 (342-395)||(26737737-26737790)
chr6 (325-395)||(26890753-26890823)
chr6 (325-403)||(27651967-27652045)
chr6 (1-90)||(26632715-26632804)
chr6 (1-90)||(26738691-26738780)
chr6 (190-267)||(26632634-26632711)
chr6 (190-267)||(26738610-26738687)
[»] scaffold0003 (2 HSPs)
scaffold0003 (32-262)||(65960-66189)
scaffold0003 (334-403)||(64961-65030)
[»] chr8 (1 HSPs)
chr8 (334-403)||(29269748-29269817)
[»] scaffold0349 (1 HSPs)
scaffold0349 (325-403)||(17993-18071)


Alignment Details
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 31289939 - 31289552
Alignment:
Q  1 ttccaccactgcgtcagtgagtggaactgcaaacatttgaccgggatcgaaagtttgagggatcgcgtcaaggaatgtccatagggaatcctcacaatcg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||            ||||||          ||||||||||||||||||||||||    
T  31289939 ttccaccactgcgtcagtgagtggaactgcaaacatttgaccgggatc------------gatcgc----------gtccatagggaatcctcacaatcg 31289862  T
Q  101 agctggttaggaagtctatctcgtaaaagtctcatactaaacacattcnnnnnnnggcactgatgtgagccatatctctgcactgccttcaataattcat 200  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||    
T  31289861 agccggttaggaagtctatctcgtaaaagtctcatactaaacacattctttttttggcactgatgtgagccatatctctgcactgccttcaataattcat 31289762  T
Q  201 cattgaaatcattgggaaaacgcaaatatcacagatcttgataacaacctttcaccgagaatatgttg-------tggcaaccatttatcaacatccagt 293  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||    
T  31289761 cattgaaatcattgggaaaatgcaaatatcacagatcttgataacaacctttcaccgagaatatgttgcactctctggcaaccatttatcaacatccagt 31289662  T
Q  294 acaggttgctgcagctgtgtttttacacaagaaactgaactggcagagaagtgtttttacacaagaataccttattaatcacaagagccatacagtgttg 393  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31289661 acaggttgctgcagctgtgtttttacacaagaaactgaactggcagagaagtgtttttacacaagaataccttattaatcacaagagccatacagtgttg 31289562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 10 - 311
Target Start/End: Complemental strand, 26652255 - 26651948
Alignment:
Q  10 tgcgtcagtgagtggaactgcaaacatttgaccgggatcgaaagtttgagggatcgcgtcaaggaatgtccatagggaatcctcacaatcgagctggtta 109  Q
    ||||||| |||| |||||||| |||||||||| | |||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||    
T  26652255 tgcgtcattgagcggaactgcgaacatttgactgagatcaaaagtttgagggatcacatcaaggaatgtccatagggaatcctcacaatcgagccggtta 26652156  T
Q  110 ggaagtctatctcgtaaaagtctcatactaaacacattcnnnnnnnggcactgatgtgagccata-tctctgcactgccttcaataattcatcattgaaa 208  Q
     ||||||||||| |||| |||| || || |||||||||        |||| |||||||| ||||| ||||||||||||||||||||||||||| ||||||    
T  26652155 tgaagtctatcttgtaagagtcccaaaccaaacacatt--ttttttggcaatgatgtgaaccataatctctgcactgccttcaataattcatccttgaaa 26652058  T
Q  209 tcattgggaaaacgcaaatatcacagatcttgataacaacctttcaccgagaatatgttg-------tggcaaccatttatcaacatccagtacaggttg 301  Q
    ||||||| ||||||||||||||||||||||| |||||| ||||||||||||||| |||||       ||||||||||||||||||||||| ||||||||     
T  26652057 tcattggaaaaacgcaaatatcacagatcttcataacatcctttcaccgagaatctgttgcactctctggcaaccatttatcaacatccaatacaggttt 26651958  T
Q  302 ctgcagctgt 311  Q
    ||||||||||    
T  26651957 ctgcagctgt 26651948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 10 - 311
Target Start/End: Complemental strand, 26758223 - 26757916
Alignment:
Q  10 tgcgtcagtgagtggaactgcaaacatttgaccgggatcgaaagtttgagggatcgcgtcaaggaatgtccatagggaatcctcacaatcgagctggtta 109  Q
    ||||||| |||| |||||||| |||||||||| | |||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||    
T  26758223 tgcgtcattgagcggaactgcgaacatttgactgagatcaaaagtttgagggatcacatcaaggaatgtccatagggaatcctcacaatcgagccggtta 26758124  T
Q  110 ggaagtctatctcgtaaaagtctcatactaaacacattcnnnnnnnggcactgatgtgagccata-tctctgcactgccttcaataattcatcattgaaa 208  Q
     ||||||||||| |||| |||| || || |||||||||        |||| |||||||| ||||| ||||||||||||||||||||||||||| ||||||    
T  26758123 tgaagtctatcttgtaagagtcccaaaccaaacacatt--ttttttggcaatgatgtgaaccataatctctgcactgccttcaataattcatccttgaaa 26758026  T
Q  209 tcattgggaaaacgcaaatatcacagatcttgataacaacctttcaccgagaatatgttg-------tggcaaccatttatcaacatccagtacaggttg 301  Q
    ||||||| ||||||||||||||||||||||| |||||| ||||||||||||||| |||||       ||||||||||||||||||||||| ||||||||     
T  26758025 tcattggaaaaacgcaaatatcacagatcttcataacatcctttcaccgagaatctgttgcactctctggcaaccatttatcaacatccaatacaggttt 26757926  T
Q  302 ctgcagctgt 311  Q
    ||||||||||    
T  26757925 ctgcagctgt 26757916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 32 - 262
Target Start/End: Original strand, 27421174 - 27421403
Alignment:
Q  32 aacatttgaccgggatcgaaagtttgagggatcgcgtcaaggaatgtccatagggaatcctcacaatcgagctggttaggaagtctatctcgtaaaagtc 131  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||| ||||    
T  27421174 aacatttgaccgggattgaaagtttgagggatcgtgtcaaggaatgtccatagggaatcctcacaatcgagccggttaggaagcctatcttgtaagagtc 27421273  T
Q  132 tcatactaaacacattcnnnnnnnggcactgatgtgagccat-atctctgcactgccttcaataattcatcattgaaatcattgggaaaacgcaaatatc 230  Q
    ||  || | |||||  |        ||||||||||||||||| |||| ||||||||||||||||||||||| | ||||||||| | ||||||||||| ||    
T  27421274 tccaaccatacaca-actttttttagcactgatgtgagccataatctatgcactgccttcaataattcatcgtcgaaatcatt-gaaaaacgcaaatttc 27421371  T
Q  231 acagatcttgataacaacctttcaccgagaat 262  Q
    |||| ||||||||||| |||||| | ||||||    
T  27421372 acagctcttgataacatcctttctctgagaat 27421403  T

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Target: chr6; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 325 - 403
Target Start/End: Complemental strand, 26854035 - 26853957
Alignment:
Q  325 aaactgaactggcagagaagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctac 403  Q
    |||||||  ||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  26854035 aaactgacttggcagaaaattgtttttacacaagaataacttattaatcacaagagccatacagtgttgttgctgctac 26853957  T

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Target: chr6; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 325 - 403
Target Start/End: Original strand, 27713873 - 27713951
Alignment:
Q  325 aaactgaactggcagagaagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctac 403  Q
    |||||||  ||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||| |||||||    
T  27713873 aaactgatttggcagagaagtgtttttacacaagaataacttaataatcacaagagacatacagtgttgttgctgctac 27713951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 334 - 403
Target Start/End: Original strand, 27422333 - 27422402
Alignment:
Q  334 tggcagagaagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctac 403  Q
    ||||||| || || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  27422333 tggcagaaaactgcttttacacaagaataccttattaattacaagagccatacagtgttgtttctgctac 27422402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 325 - 403
Target Start/End: Complemental strand, 26966477 - 26966399
Alignment:
Q  325 aaactgaactggcagagaagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctac 403  Q
    |||||||  ||||||  |||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||    
T  26966477 aaactgatttggcagcaaagtgtttttacacaagaataccttattaatctcaagagccatacagttttgttgctgctac 26966399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 342 - 395
Target Start/End: Complemental strand, 26631815 - 26631762
Alignment:
Q  342 aagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtt 395  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  26631815 aagtgtttttacacaagaataccttattaatcacaagagccatacaatgttgtt 26631762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 342 - 395
Target Start/End: Complemental strand, 26737790 - 26737737
Alignment:
Q  342 aagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtt 395  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  26737790 aagtgtttttacacaagaataccttattaatcacaagagccatacaatgttgtt 26737737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 325 - 395
Target Start/End: Complemental strand, 26890823 - 26890753
Alignment:
Q  325 aaactgaactggcagagaagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtt 395  Q
    |||||||  ||||||| ||||||||||||| ||||||| ||||||||||||||||||||| | ||||||||    
T  26890823 aaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgtt 26890753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 325 - 403
Target Start/End: Original strand, 27651967 - 27652045
Alignment:
Q  325 aaactgaactggcagagaagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctac 403  Q
    |||||||  ||||||| ||||||||||||||| ||||| |||||||||||||| ||  ||||||||||||| |||||||    
T  27651967 aaactgatttggcagaaaagtgtttttacacatgaataacttattaatcacaaaagttatacagtgttgttgctgctac 27652045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 26632804 - 26632715
Alignment:
Q  1 ttccaccactgcgtcagtgagtggaactgcaaacatttgaccgggatcgaaagtttgagggatcgcgtcaaggaatgtccatagggaatc 90  Q
    |||||||||||| |||||||  |||||| | || |||||||||||||  || |||| |||||| | ||||||||||||||||||| ||||    
T  26632804 ttccaccactgcatcagtgaacggaactacgaagatttgaccgggatgaaatgtttaagggattgggtcaaggaatgtccataggaaatc 26632715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 26738780 - 26738691
Alignment:
Q  1 ttccaccactgcgtcagtgagtggaactgcaaacatttgaccgggatcgaaagtttgagggatcgcgtcaaggaatgtccatagggaatc 90  Q
    |||||||||||| |||||||  |||||| | || |||||||||||||  || |||| |||||| | ||||||||||||||||||| ||||    
T  26738780 ttccaccactgcatcagtgaacggaactacgaagatttgaccgggatgaaatgtttaagggattgggtcaaggaatgtccataggaaatc 26738691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 267
Target Start/End: Complemental strand, 26632711 - 26632634
Alignment:
Q  190 caataattcatcattgaaatcattgggaaaacgcaaatatcacagatcttgataacaacctttcaccgagaatatgtt 267  Q
    |||||||||||||| |||||||| | |||||   |||| ||||   ||||||||||| ||||||||||||||| ||||    
T  26632711 caataattcatcatcgaaatcatcgtgaaaaacaaaatttcactactcttgataacatcctttcaccgagaatctgtt 26632634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 267
Target Start/End: Complemental strand, 26738687 - 26738610
Alignment:
Q  190 caataattcatcattgaaatcattgggaaaacgcaaatatcacagatcttgataacaacctttcaccgagaatatgtt 267  Q
    |||||||||||||| |||||||| | |||||   |||| ||||   ||||||||||| ||||||||||||||| ||||    
T  26738687 caataattcatcatcgaaatcatcgtgaaaaacaaaatttcactactcttgataacatcctttcaccgagaatctgtt 26738610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 103; Significance: 4e-51; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 32 - 262
Target Start/End: Complemental strand, 66189 - 65960
Alignment:
Q  32 aacatttgaccgggatcgaaagtttgagggatcgcgtcaaggaatgtccatagggaatcctcacaatcgagctggttaggaagtctatctcgtaaaagtc 131  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||| ||||    
T  66189 aacatttgaccgggattgaaagtttgagggatcgtgtcaaggaatgtccatagggaatcctcacaatcgagccggttaggaagcctatcttgtaagagtc 66090  T
Q  132 tcatactaaacacattcnnnnnnnggcactgatgtgagccat-atctctgcactgccttcaataattcatcattgaaatcattgggaaaacgcaaatatc 230  Q
    ||  || | |||||  |        ||||||||||||||||| |||| ||||||||||||||||||||||| | ||||||||| | ||||||||||| ||    
T  66089 tccaaccatacaca-actttttttagcactgatgtgagccataatctatgcactgccttcaataattcatcgtcgaaatcatt-gaaaaacgcaaatttc 65992  T
Q  231 acagatcttgataacaacctttcaccgagaat 262  Q
    |||| ||||||||||| |||||| | ||||||    
T  65991 acagctcttgataacatcctttctctgagaat 65960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 334 - 403
Target Start/End: Complemental strand, 65030 - 64961
Alignment:
Q  334 tggcagagaagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctac 403  Q
    ||||||| || || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  65030 tggcagaaaactgcttttacacaagaataccttattaattacaagagccatacagtgttgtttctgctac 64961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 334 - 403
Target Start/End: Original strand, 29269748 - 29269817
Alignment:
Q  334 tggcagagaagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctac 403  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||    
T  29269748 tggcagagaagtgtttttacacaagaataacttaataatcacaagagccatacagtgttgttgctgctac 29269817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 325 - 403
Target Start/End: Complemental strand, 18071 - 17993
Alignment:
Q  325 aaactgaactggcagagaagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctac 403  Q
    |||||||  ||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||| |||||||    
T  18071 aaactgatttggcagagaagtgtttttacacaagaataacttaataatcacaagagacatacagtgttgttgctgctac 17993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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