View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10999_low_6 (Length: 323)
Name: NF10999_low_6
Description: NF10999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10999_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 2 - 308
Target Start/End: Original strand, 23963206 - 23963512
Alignment:
| Q |
2 |
ggctgtctcaatgagtttccaagccgaatctctattatattcaccctgtaaccttggatcaactattccttgaacatctcctatttcgagttttcgatta |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
23963206 |
ggctgtctcaatgagtttccaagccgaatctctattatattcaccctgtaaccttggatcaactattccttgaaaatctcctatttcgagttttcgatta |
23963305 |
T |
|
| Q |
102 |
acccaaggtagtatgtgaatataattgtttgctgttccaattaacgctggttgacccctaactagctccagcaaaactactcccaaactatatacatcac |
201 |
Q |
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||||| |||||||| ||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23963306 |
acccatggtagtatatgaatataattgtctggtgttccaatttacgctggttgacccctaactagctccagcaaaactactcccaaactatatacatcac |
23963405 |
T |
|
| Q |
202 |
tctttttattgagaattcctgtgttctgaaatctgcaaaaaatatatcattatgttacatgcgtaatatttttaatcatatttagttttaatggcacgta |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23963406 |
tctttttattgagaattcctgtgttctgaaatctgcaaaaaatatatcattatgttacatgcgtaatatttttaatcatatttagttttaatggcacgta |
23963505 |
T |
|
| Q |
302 |
taaaaat |
308 |
Q |
| |
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||||||| |
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| T |
23963506 |
taaaaat |
23963512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 24001605 - 24001302
Alignment:
| Q |
1 |
tggctgtctcaatgagtttccaagccgaatctctattatattcaccctgtaaccttggatcaactattccttgaacatctcctatttcgagttttcgatt |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
24001605 |
tggctgtctcaatgagtttccaagccgaatctctattgtattcaccttgtaaccttggatcaactattccttgaacatctcctatttcaagttttcgatt |
24001506 |
T |
|
| Q |
101 |
aacccaaggtagtatgtgaatataattgtttgctgttccaattaacgctggttgacccctaactagctccagcaaaactactcccaaactatatacatca |
200 |
Q |
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|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
24001505 |
aacccatggtagtatgtgaatataattgtttggtgttccaattaacgctggttgacctgtaactagctccagcaaaactactcccaaactatagacatca |
24001406 |
T |
|
| Q |
201 |
ctctttttattgagaattcctgtgttctgaaatctgcaaaaaatatatcattatgttacatgcgtaatatttttaatcatatttagttttaatggcacgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
24001405 |
ctctttttattgagaattcctgtgttctgaaatctgcagaaaaaatataattatgttacatgcgtaatatttttaatcgtatttagttttaatggcacgt |
24001306 |
T |
|
| Q |
301 |
ataa |
304 |
Q |
| |
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|||| |
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|
| T |
24001305 |
ataa |
24001302 |
T |
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