View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10999_low_9 (Length: 256)
Name: NF10999_low_9
Description: NF10999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10999_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 8 - 250
Target Start/End: Complemental strand, 20018866 - 20018625
Alignment:
| Q |
8 |
tgcattatggttcgttgtagaaaatccatctggactggcacagaatttggggacagccgtcaaggaatctgacactgaccatgatgttgatactcaacta |
107 |
Q |
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| T |
20018866 |
tgcatcatggtttgttgtagaaaatccatctggactggcacagaatttggggacagccgtcaaggaatctgacactgaccttgatgttgatactcaacta |
20018767 |
T |
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| Q |
108 |
aaaaatatggtattataaagttttatgcgttttcatagtataaatgaaaagnnnnnnnnnngtggattagctaaactagaggaacaatccgtcttttatt |
207 |
Q |
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| T |
20018766 |
aaaaatatggtattataaagttttatgcgttttcatagtataaatgaaaag-tttttttttgtggattagctaaactagaggaacaatccgtcttttatt |
20018668 |
T |
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| Q |
208 |
aagataaattgtaaaatcccttttgaatcattatgatgtccat |
250 |
Q |
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| T |
20018667 |
aagataacttgtaaaatcccttttgaatcattatgatgtccat |
20018625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 22 - 158
Target Start/End: Complemental strand, 20028840 - 20028704
Alignment:
| Q |
22 |
ttgtagaaaatccatctggactggcacagaatttggggacagccgtcaaggaatctgacactgaccatgatgttgatactcaactaaaaaatatggtatt |
121 |
Q |
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| T |
20028840 |
ttgtagaaaatccatctgggctggctcagaatttggtgacagtcgtcaaggaatctgacactgacattgatgttgatgctcaactaaaaaatatggtatt |
20028741 |
T |
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| Q |
122 |
ataaagttttatgcgttttcatagtataaatgaaaag |
158 |
Q |
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| T |
20028740 |
ataatgttttatgcattttggtagcataaatgaaaag |
20028704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 22 - 158
Target Start/End: Complemental strand, 20009403 - 20009267
Alignment:
| Q |
22 |
ttgtagaaaatccatctggactggcacagaatttggggacagccgtcaaggaatctgacactgaccatgatgttgatactcaactaaaaaatatggtatt |
121 |
Q |
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| T |
20009403 |
ttgtagaaaatccatctgggatggctcagaatttagggacagtcgtcaaggaatctgacaatgacattgatgttgatgctcaactaaaaaatatggtatt |
20009304 |
T |
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| Q |
122 |
ataaagttttatgcgttttcatagtataaatgaaaag |
158 |
Q |
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| T |
20009303 |
ataaagttttatgtgctttcgtagcataaatgaaaag |
20009267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 141
Target Start/End: Original strand, 12573594 - 12573715
Alignment:
| Q |
22 |
ttgtagaaaatccatctggactggcacagaatttggggacagccgtcaaggaatctgacactgaccatg---atgttgatactcaactaaaaaatatggt |
118 |
Q |
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||||||||||| ||||||| ||||| |||||||||||||||| | ||||||||||||| | ||| || |||| ||| ||||||| ||||||||||| |
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| T |
12573594 |
ttgtagaaaattcatctggtctggctcagaatttggggacagtcatcaaggaatctgatgccgacattgttaatgtcgatgctcaacttaaaaatatggt |
12573693 |
T |
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| Q |
119 |
attataaagttttatgcgttttc |
141 |
Q |
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||| | || |||||||||||||| |
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| T |
12573694 |
attgt-aacttttatgcgttttc |
12573715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 244
Target Start/End: Original strand, 12573780 - 12573844
Alignment:
| Q |
180 |
aaactagaggaacaatccgtcttttattaagataaattgtaaaatcccttttgaatcattatgat |
244 |
Q |
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| T |
12573780 |
aaactagaagaataatcagttttttactaagataactagtaaaatctcttttgaatcattatgat |
12573844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 245
Target Start/End: Complemental strand, 48300332 - 48300256
Alignment:
| Q |
169 |
gtggattagctaaactagaggaacaatccgtcttttattaagataaattgtaaaatcccttttgaatcattatgatg |
245 |
Q |
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| T |
48300332 |
gtggattagctaaaatataagaacaattaatttttcactaagataacttgtaaaatctcttttgaatcattatgatg |
48300256 |
T |
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