View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1099_high_1 (Length: 1064)
Name: NF1099_high_1
Description: NF1099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1099_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 504; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 463 - 1005
Target Start/End: Original strand, 44692796 - 44693339
Alignment:
| Q |
463 |
gcggtggaatcttcgtaggaggaatgccctccccccggaggtttcggttagatgtgtgttgtgcgaggaggaaatggaaagatctaatcacctttttgtg |
562 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
44692796 |
gcggtggaatcttcgtagaaggaatgccctccccccggaggtttcggttagatgtgtgttgtgcgaggaggaaatggaaatatctaatcacctttttgtg |
44692895 |
T |
|
| Q |
563 |
cattgtccggtggctagagggatttggttggagcttctcaagtgggttgatagtatgtttataatgccgcaaagtgtttttaatcattggttctgttgga |
662 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
44692896 |
cattgtccggtggctagagggatttggttggagcttctcaagtgggttgatagtatgtttataatgccgcaaagtgtttttaatcattggctctgttgga |
44692995 |
T |
|
| Q |
663 |
atgcgggagcctctaataagaagatgattaagggatttagactcatttggcacgcgacaatttgggtgatttggaaagcgagaaatgataagatatttaa |
762 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44692996 |
atgcgggagcctctaataagaagatgattaagggatttagactcatttggcacgcgacaatttgggtgatttggaaagcgagaaatgataagatatttaa |
44693095 |
T |
|
| Q |
763 |
tgacaaggtgaaggaagtgttggaaatcattga-gaggttaaagttttatcgtggaggtggtgcctatcccgccttaatataccggcctgcctttattat |
861 |
Q |
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|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
44693096 |
tgacaaggtgaaggaagtgttggaaatcgttgaggaggttaaagttttatcgtggaggtggtgcctatccagccttaagataccggcctgcctttattat |
44693195 |
T |
|
| Q |
862 |
gagtgaagttggaatccgaagttgtgtctattgagatagttgtttttgtgctgtttggtttgtctgctgaaggtatcgttttctgtctggttttccttcg |
961 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44693196 |
gagtgaagttggaatccgaagttgtgtctattgagatagttgtttttgtgctgtttggtttgtctgctgaaggtatcgttttctgtctggttttccttcg |
44693295 |
T |
|
| Q |
962 |
ctggttgtctggttttcggggttgattccgtctctgtggtgctg |
1005 |
Q |
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|| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
44693296 |
ctagttgtctggttttcggggttgattccgtctcagtggtgctg |
44693339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 29 - 469
Target Start/End: Original strand, 44692318 - 44692758
Alignment:
| Q |
29 |
agagggttgtggtgggccgagttggttcaatgaagaggtggctaggaaggtgaggaacggggttaatactaagttttggtatgcgagatggaggggtgga |
128 |
Q |
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| T |
44692318 |
agagggttgtggtgggccgagttggttcaatgaagaggtggctaggaaggtgaggaacggggttaatactaagttttggtatgcgagatggaggggtgga |
44692417 |
T |
|
| Q |
129 |
gttccctttcgaggtaaatatcctagattgttctctatgtcaaaccaaaaagaggctatggtggcgaatatgggggtgaataatgggccggtggtggagt |
228 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44692418 |
gttccctttcgaggtaaatattctagattgttctctatgtcaaaccaaaaagaggctatggtggcgaatatgggggtgaataatgggccggtggtggagt |
44692517 |
T |
|
| Q |
229 |
ggcgnnnnnnngtgtgggaggaacaattgttaaataatttattggaggatttggaggggcatgtgtggactcatggtgaagacgtttgggtttggaagct |
328 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44692518 |
ggcgtttttttgtgtgggaggaacaattgttaaataatttattggaggatttggaggggcatgtgtggactcatggtgaagacgtttgggtttggaagct |
44692617 |
T |
|
| Q |
329 |
tgaagatgatgggaattttacggttaaatctatgtatggggaagcttgaaggtagctggattgtggagaataggtggagtgtggaggagttgggagtttt |
428 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44692618 |
tgaagatgatgggaattttacagttaaatctatgtatggggaagcttgaaggtagctggattgtggagaataggtggagtgtggaggagttgggagtttt |
44692717 |
T |
|
| Q |
429 |
ttctcaactttggaaaagcccggctccgtcaaaagcggtgg |
469 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44692718 |
ttctcaactttggaaaagcccggctccgtcaaaagtggtgg |
44692758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 1e-53; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 488 - 787
Target Start/End: Complemental strand, 34866371 - 34866072
Alignment:
| Q |
488 |
gccctccccccggaggtttcggttagatgtgtgttgtgcgaggaggaaatggaaagatctaatcacctttttgtgcattgtccggtggctagagggattt |
587 |
Q |
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||||| || |||||||| ||||| || |||| || ||||||| || | ||||| ||| | |||||| || | ||||||| ||||||||||||||||| |
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| T |
34866371 |
gcccttcctccggaggtctcggtgaggtgtgctttatgcgaggttgagacggaaacatccattcacctcttcgcgcattgtatggtggctagagggattt |
34866272 |
T |
|
| Q |
588 |
ggttggagcttctcaagtgggttgatagtatgtttataatgccgcaaagtgtttttaatcattggttctgttggaatgcgggagcctctaataagaagat |
687 |
Q |
| |
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|||| || || || ||||||||||||| ||||||| | ||||| |||| |||||||||||||||||| |||||||||||||| |||||||||||||| | |
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| T |
34866271 |
ggttagaactccttaagtgggttgataatatgtttttgatgcctcaaaatgtttttaatcattggttgtgttggaatgcgggtgcctctaataagaaatt |
34866172 |
T |
|
| Q |
688 |
gattaagggatttagactcatttggcacgcgacaatttgggtgatttggaaagcgagaaatgataagatatttaatgacaaggtgaaggaagtgttggaa |
787 |
Q |
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||||||||| ||||||||||||||||| || |||||||||| |||||||| ||| ||||||||||| ||||| ||||||| ||| || ||| ||||| |
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| T |
34866171 |
gattaagggttttagactcatttggcatgccgcaatttgggttatttggaagatgaggaatgataagatttttaacgacaaggagaaagaggtgatggaa |
34866072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 263 - 469
Target Start/End: Complemental strand, 34866639 - 34866434
Alignment:
| Q |
263 |
taatttattggaggatttggaggggcatgtgtggactcatggtgaagacgtttgggtttggaagcttgaagatgatgggaattttacggttaaatctatg |
362 |
Q |
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|||||||||||| ||||||||||||||||||||| || | ||||||||| ||||| |||| | | ||||| || ||||| || ||||| ||||||||| |
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| T |
34866639 |
taatttattggaagatttggaggggcatgtgtggtctaacggtgaagacagatgggtgtggaggatggaagacgaagggaaattcacggtgaaatctatg |
34866540 |
T |
|
| Q |
363 |
tatggggaagcttgaaggtagctggattgtggagaataggtggagtgtggaggagttgggagttttttctcaactttggaaaagcccggctccgtcaaaa |
462 |
Q |
| |
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|||| | ||| ||||||| || |||||||||||||| | |||||||||||||||||| |||| ||| |||||||||||||||||||| || |||||| |
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| T |
34866539 |
tatgcg-aagtttgaagggagatggattgtggagaacaattggagtgtggaggagttgagagtgtttctccaactttggaaaagcccggccccctcaaaa |
34866441 |
T |
|
| Q |
463 |
gcggtgg |
469 |
Q |
| |
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| ||||| |
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| T |
34866440 |
gtggtgg |
34866434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 230
Target Start/End: Complemental strand, 34866777 - 34866690
Alignment:
| Q |
143 |
taaatatcctagattgttctctatgtcaaaccaaaaagaggctatggtggcgaatatgggggtgaataatgggccggtggtggagtgg |
230 |
Q |
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||||||||||||||| ||||||||||| |||||||||||||| |||| ||| | || |||||||||| || ||| ||||||||||| |
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| T |
34866777 |
taaatatcctagattattctctatgtcgaaccaaaaagaggcattggttgcggagattggggtgaataccggtccgatggtggagtgg |
34866690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 199
Target Start/End: Original strand, 12830039 - 12830121
Alignment:
| Q |
117 |
tggaggggtggagttccctttcgaggtaaatatcctagattgttctctatgtcaaaccaaaaagaggctatggtggcgaatat |
199 |
Q |
| |
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||||||||||| ||| |||| || | ||||||||| ||||| ||| | |||| ||||||||||||||| ||||||||| |||| |
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| T |
12830039 |
tggaggggtggtgttgccttccgtgataaatatccaagattattcgcaatgttaaaccaaaaagaggcaatggtggcggatat |
12830121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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