View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1099_high_11 (Length: 268)

Name: NF1099_high_11
Description: NF1099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1099_high_11
NF1099_high_11
[»] chr2 (3 HSPs)
chr2 (31-123)||(1226873-1226965)
chr2 (49-123)||(9837782-9837856)
chr2 (185-222)||(1227027-1227064)


Alignment Details
Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 31 - 123
Target Start/End: Original strand, 1226873 - 1226965
Alignment:
Q  31 agggtgatgaagtttatgtaatcttacccaaatagaccacaaaagaatgacataaaaactaccctccaagtcaactgtggtctattcttcctg 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1226873 agggtgatgaagtttatgtaatcttacccaaatagaccacaaaagaatgacataaaaactaccctccaagtcaactgtggtctattcttcctg 1226965  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 49 - 123
Target Start/End: Original strand, 9837782 - 9837856
Alignment:
Q  49 taatcttacccaaatagaccacaaaagaatgacataaaaactaccctccaagtcaactgtggtctattcttcctg 123  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||||||| | || ||||||||||||||||    
T  9837782 taatcttacccaaatagaccacaaaaaaatgacataaaaaccaccctccaagtgagctttggtctattcttcctg 9837856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 1227027 - 1227064
Alignment:
Q  185 gttaatcatatatccagtacttaaatatatgaaggagt 222  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  1227027 gttaatcatatatcccgtacttaaatatatgaaggagt 1227064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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