View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1099_low_10 (Length: 435)
Name: NF1099_low_10
Description: NF1099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1099_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 163; Significance: 7e-87; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 128 - 340
Target Start/End: Original strand, 30630505 - 30630712
Alignment:
| Q |
128 |
aaattggtattaatagtaacctctgcaacactgacactagtgattgaaagcgtgtccggtgttgcaacaccgacacaagactgatacatgtgattattac |
227 |
Q |
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| T |
30630505 |
aaattggtattaatagtaacctctgcaacactgacacttgtgattgaaagcgtgtccggtgt-gcaagaccgacacaagactgatacatgtgatta---c |
30630600 |
T |
|
| Q |
228 |
attcacttaattcattttttcaaatatttatcagtgtcgacgtgtttatgtcagtgtcatagtgctctatcaggtgtttgtgtctgtgtcagcgcttcat |
327 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
30630601 |
attcacttaattcattttttcaaatattta-cagtgtcgacgtgtttatgtcagtgtcatagtgctctatcaggtgtttgtgtttgtgtcagggcttcat |
30630699 |
T |
|
| Q |
328 |
agacggtaatagt |
340 |
Q |
| |
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|||| |||||||| |
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| T |
30630700 |
agacagtaatagt |
30630712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 47 - 93
Target Start/End: Original strand, 30630460 - 30630506
Alignment:
| Q |
47 |
cttttatctcaaacaatagtaatagtatattaataaataaactacaa |
93 |
Q |
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| T |
30630460 |
cttttatctcaaacaatagtaatagtatattaataaataaactacaa |
30630506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 223 - 288
Target Start/End: Original strand, 14782863 - 14782928
Alignment:
| Q |
223 |
attacattcacttaattcattttttcaaatatttatcagtgtcgacgtgtttatgtcagtgtcata |
288 |
Q |
| |
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||||| |||| ||||||||||||||||||| |||| |||| || || ||||||||||||||||||| |
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| T |
14782863 |
attacgttcaattaattcattttttcaaatttttaccagtatcaacatgtttatgtcagtgtcata |
14782928 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 287
Target Start/End: Original strand, 10764093 - 10764157
Alignment:
| Q |
223 |
attacattcacttaattcattttttcaaatatttatcagtgtcgacgtgtttatgtcagtgtcat |
287 |
Q |
| |
|
||||| |||| ||||||||||||||||||| |||| ||||||| || |||| |||||||| |||| |
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|
| T |
10764093 |
attacgttcaattaattcattttttcaaatttttaccagtgtcaacatgttcatgtcagtatcat |
10764157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 268
Target Start/End: Complemental strand, 24975015 - 24974970
Alignment:
| Q |
223 |
attacattcacttaattcattttttcaaatatttatcagtgtcgac |
268 |
Q |
| |
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|||||||||| ||||||||||||| || || ||||||||||||||| |
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|
| T |
24975015 |
attacattcaattaattcatttttacatatttttatcagtgtcgac |
24974970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 273
Target Start/End: Complemental strand, 23948434 - 23948384
Alignment:
| Q |
223 |
attacattcacttaattcattttttcaaatatttatcagtgtcgacgtgtt |
273 |
Q |
| |
|
|||||||||| |||||| |||||||||||| |||||||||||||| |||| |
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|
| T |
23948434 |
attacattcaattaattgattttttcaaattattatcagtgtcgacatgtt |
23948384 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 272
Target Start/End: Original strand, 26870499 - 26870548
Alignment:
| Q |
223 |
attacattcacttaattcattttttcaaatatttatcagtgtcgacgtgt |
272 |
Q |
| |
|
|||||||||| |||| ||| ||||||||||| ||||||||||| |||||| |
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|
| T |
26870499 |
attacattcaattaagtcaatttttcaaataattatcagtgtctacgtgt |
26870548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 283
Target Start/End: Original strand, 9032053 - 9032113
Alignment:
| Q |
223 |
attacattcacttaattcattttttcaaatatttatcagtgtcgacgtgtttatgtcagtg |
283 |
Q |
| |
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|||||||||| |||||| ||||||||||| |||| ||||||||||||| ||||||||| |
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| T |
9032053 |
attacattcaaataattccttttttcaaatttttactagtgtcgacgtgtccatgtcagtg |
9032113 |
T |
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