View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1099_low_11 (Length: 303)

Name: NF1099_low_11
Description: NF1099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1099_low_11
NF1099_low_11
[»] chr2 (1 HSPs)
chr2 (68-156)||(6774390-6774484)
[»] chr1 (15 HSPs)
chr1 (171-303)||(37182076-37182206)
chr1 (168-220)||(21747943-21747995)
chr1 (168-218)||(37183350-37183400)
chr1 (234-279)||(17242045-17242090)
chr1 (168-220)||(17240717-17240769)
chr1 (168-220)||(35713697-35713749)
chr1 (168-220)||(42097326-42097378)
chr1 (168-220)||(42098732-42098784)
chr1 (168-272)||(9008761-9008864)
chr1 (171-222)||(43402266-43402316)
chr1 (234-296)||(9010983-9011044)
chr1 (234-272)||(17240784-17240822)
chr1 (168-220)||(13971004-13971056)
chr1 (168-220)||(21749290-21749341)
chr1 (168-220)||(43403299-43403351)
[»] chr8 (4 HSPs)
chr8 (168-222)||(40462270-40462324)
chr8 (168-220)||(14101091-14101143)
chr8 (168-222)||(14099745-14099798)
chr8 (168-220)||(42480898-42480949)
[»] chr4 (12 HSPs)
chr4 (168-222)||(20673565-20673619)
chr4 (168-220)||(5169313-5169365)
chr4 (168-220)||(16314203-16314255)
chr4 (168-220)||(23506385-23506437)
chr4 (171-278)||(47861936-47862044)
chr4 (168-220)||(1995868-1995920)
chr4 (168-220)||(1997060-1997112)
chr4 (168-220)||(5170387-5170439)
chr4 (168-220)||(17288631-17288683)
chr4 (168-220)||(23504895-23504947)
chr4 (168-220)||(24685024-24685076)
chr4 (168-220)||(39661319-39661371)
[»] chr3 (11 HSPs)
chr3 (234-303)||(51832429-51832497)
chr3 (168-220)||(36438775-36438827)
chr3 (168-220)||(15439681-15439733)
chr3 (168-220)||(34799865-34799917)
chr3 (168-220)||(37086743-37086795)
chr3 (168-220)||(42278457-42278509)
chr3 (168-216)||(52042115-52042162)
chr3 (168-222)||(48537852-48537904)
chr3 (239-279)||(11150344-11150384)
chr3 (168-220)||(36437214-36437266)
chr3 (168-220)||(37085413-37085465)
[»] chr6 (7 HSPs)
chr6 (168-220)||(25482148-25482200)
chr6 (168-220)||(12603937-12603988)
chr6 (168-220)||(21382482-21382534)
chr6 (168-220)||(21383822-21383874)
chr6 (168-220)||(32146094-32146146)
chr6 (168-222)||(9307140-9307194)
chr6 (168-220)||(25483402-25483453)
[»] scaffold0061 (1 HSPs)
scaffold0061 (168-224)||(11251-11308)
[»] chr7 (10 HSPs)
chr7 (234-279)||(5737244-5737289)
chr7 (168-220)||(5769308-5769360)
chr7 (168-220)||(12628033-12628085)
chr7 (168-220)||(12629431-12629483)
chr7 (168-220)||(21261980-21262032)
chr7 (168-220)||(21263321-21263373)
chr7 (234-272)||(5769255-5769293)
chr7 (168-222)||(7848006-7848060)
chr7 (168-220)||(19628184-19628235)
chr7 (168-220)||(47578587-47578639)
[»] scaffold0262 (2 HSPs)
scaffold0262 (168-289)||(4315-4434)
scaffold0262 (168-220)||(2760-2812)
[»] scaffold0071 (1 HSPs)
scaffold0071 (168-220)||(22458-22510)
[»] scaffold0484 (2 HSPs)
scaffold0484 (168-222)||(11536-11589)
scaffold0484 (168-222)||(12798-12851)
[»] scaffold0049 (1 HSPs)
scaffold0049 (168-217)||(386-435)
[»] chr5 (1 HSPs)
chr5 (168-221)||(27490099-27490152)
[»] scaffold0408 (1 HSPs)
scaffold0408 (168-219)||(10087-10136)


Alignment Details
Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 68 - 156
Target Start/End: Complemental strand, 6774484 - 6774390
Alignment:
Q  68 atgagcaatttcaatagtaatattagtaatc--taggtaatactactttgtcttgttttga----tgtctcattccttggatatcataatcatat 156  Q
    |||||||||||||||||||||||||||||||  |||||||| |||||||||||||||||||    ||||||||||||||||||||||||||||||    
T  6774484 atgagcaatttcaatagtaatattagtaatctttaggtaatcctactttgtcttgttttgatgtctgtctcattccttggatatcataatcatat 6774390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 171 - 303
Target Start/End: Original strand, 37182076 - 37182206
Alignment:
Q  171 ttaataggcttttacccctctgccatattggtgtcttttggtttaccccctacggnnnnnnntcttgtagatccccccttgccattagaagattttttgg 270  Q
    |||||||||||||||||| |||| |||| || ||||||||| |||||||||| ||        ||||||||| | |||||| |||||||||||| |||||    
T  37182076 ttaataggcttttacccc-ctgctatatgggcgtcttttggcttacccccta-ggaaaaaaaacttgtagattctcccttgtcattagaagattatttgg 37182173  T
Q  271 ttaacaccctccaagccatatgactgtgcaaat 303  Q
    | ||||||| |||| ||||||||||||||||||    
T  37182174 tcaacaccccccaaaccatatgactgtgcaaat 37182206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 21747943 - 21747995
Alignment:
Q  168 gggttaataggcttttacccctctgccatattggtgtcttttggtttaccccc 220  Q
    ||||||||||||||||||||| ||||||| | || ||||||||||||||||||    
T  21747943 gggttaataggcttttacccccctgccatttgggggtcttttggtttaccccc 21747995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 218
Target Start/End: Complemental strand, 37183400 - 37183350
Alignment:
Q  168 gggttaataggcttttacccctctgccatattggtgtcttttggtttaccc 218  Q
    ||||||||||||||||||||||||| ||||| |  ||||||||||||||||    
T  37183400 gggttaataggcttttacccctctgtcatatagacgtcttttggtttaccc 37183350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 234 - 279
Target Start/End: Complemental strand, 17242090 - 17242045
Alignment:
Q  234 cttgtagatccccccttgccattagaagattttttggttaacaccc 279  Q
    ||||||||| ||||||||||||||||||||| ||||||| ||||||    
T  17242090 cttgtagattcccccttgccattagaagattctttggtttacaccc 17242045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 17240717 - 17240769
Alignment:
Q  168 gggttaataggcttttacccctctgccatattggtgtcttttggtttaccccc 220  Q
    ||||||||||||||||||||| ||||||| | || |||||||||| |||||||    
T  17240717 gggttaataggcttttacccccctgccatttgggggtcttttggtataccccc 17240769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 35713749 - 35713697
Alignment:
Q  168 gggttaataggcttttacccctctgccatattggtgtcttttggtttaccccc 220  Q
    |||||||| |||||||||||| ||||||||| || |||||||||| |||||||    
T  35713749 gggttaatgggcttttacccccctgccatatgggggtcttttggtataccccc 35713697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 42097326 - 42097378
Alignment:
Q  168 gggttaataggcttttacccctctgccatattggtgtcttttggtttaccccc 220  Q
    ||||||||||| ||||||||| ||||||| | || ||||||||||||||||||    
T  42097326 gggttaataggtttttacccccctgccatttgggggtcttttggtttaccccc 42097378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 42098784 - 42098732
Alignment:
Q  168 gggttaataggcttttacccctctgccatattggtgtcttttggtttaccccc 220  Q
    ||||||||||||||||||||| ||||||| | || ||||||||||||| ||||    
T  42098784 gggttaataggcttttacccccctgccatttgggggtcttttggtttatcccc 42098732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 168 - 272
Target Start/End: Original strand, 9008761 - 9008864
Alignment:
Q  168 gggttaataggcttttacccctctgccatattggtgtcttttggtttaccccctacggnnnnnnntcttgtagatccccccttgccattagaagattttt 267  Q
    ||||||||||||||||||||| ||||||| | || |||||||||| ||||||||            ||||||||| ||||||||||||||||||||| ||    
T  9008761 gggttaataggcttttacccc-ctgccatttgggggtcttttggtataccccctgtcaaaaaaaaacttgtagattcccccttgccattagaagattctt 9008859  T
Q  268 tggtt 272  Q
    |||||    
T  9008860 tggtt 9008864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 171 - 222
Target Start/End: Original strand, 43402266 - 43402316
Alignment:
Q  171 ttaataggcttttacccctctgccatattggtgtcttttggtttacccccta 222  Q
    |||||||||||||||||| ||||||| | || ||||||||||||||||||||    
T  43402266 ttaataggcttttacccc-ctgccatttgggggtcttttggtttacccccta 43402316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 296
Target Start/End: Complemental strand, 9011044 - 9010983
Alignment:
Q  234 cttgtagatccccccttgccattagaagattttttggttaacaccctccaagccatatgactg 296  Q
    |||||||||  |||||||||||||||||||| ||||||| |||||| |||| |||| ||||||    
T  9011044 cttgtagatttccccttgccattagaagattctttggtttacaccc-ccaaaccatctgactg 9010983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 272
Target Start/End: Original strand, 17240784 - 17240822
Alignment:
Q  234 cttgtagatccccccttgccattagaagattttttggtt 272  Q
    ||||||||| ||||||||||||||||||||| |||||||    
T  17240784 cttgtagattcccccttgccattagaagattctttggtt 17240822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 13971056 - 13971004
Alignment:
Q  168 gggttaataggcttttacccctctgccatattggtgtcttttggtttaccccc 220  Q
    ||||||||||| |||||| || ||||||| | || ||||||||||||||||||    
T  13971056 gggttaataggtttttactcccctgccatttgggagtcttttggtttaccccc 13971004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 21749341 - 21749290
Alignment:
Q  168 gggttaataggcttttacccctctgccatattggtgtcttttggtttaccccc 220  Q
    ||||||||||||||||||||| || ||||||  | ||||||||||||||||||    
T  21749341 gggttaataggcttttacccc-ctaccatatgtgcgtcttttggtttaccccc 21749290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 43403351 - 43403299
Alignment:
Q  168 gggttaataggcttttacccctctgccatattggtgtcttttggtttaccccc 220  Q
    ||||||||||||||||| ||| ||| ||| | || ||||||||||||||||||    
T  43403351 gggttaataggcttttatccccctgtcatttgggggtcttttggtttaccccc 43403299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 40462270 - 40462324
Alignment:
Q  168 gggttaataggcttttacccctctgccatattggtgtcttttggtttacccccta 222  Q
    ||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||    
T  40462270 gggttaataggcttttacccccctgccatatgggtgacttttggtttacccccta 40462324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 14101143 - 14101091
Alignment:
Q  168 gggttaataggcttttacccctctgccatattggtgtcttttggtttaccccc 220  Q
    ||||||||||||||||||||| |||||||||  | ||||||||||||||||||    
T  14101143 gggttaataggcttttacccccctgccatatgagcgtcttttggtttaccccc 14101091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 14099745 - 14099798
Alignment:
Q  168 gggttaataggcttttacccctctgccatattggtgtcttttggtttacccccta 222  Q
    ||||||||||||||||||||| ||||||| | || ||||||||||||||||||||    
T  14099745 gggttaataggcttttacccc-ctgccatttgggggtcttttggtttacccccta 14099798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 42480898 - 42480949
Alignment:
Q  168 gggttaataggcttttacccctctgccatattggtgtcttttggtttaccccc 220  Q
    ||||||||||||||||||||| ||||||| | || || |||||||||||||||    
T  42480898 gggttaataggcttttacccc-ctgccatttaggggttttttggtttaccccc 42480949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 20673565 - 20673619
Alignment:
Q  168 gggttaataggcttttacccctctgccatattggtgtcttttggtttacccccta 222  Q
    ||||||||||||||||||||| ||||||| | |||||||||||||||||||||||    
T  20673565 gggttaataggcttttacccccctgccatttgggtgtcttttggtttacccccta 20673619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 5169313 - 5169365
Alignment:
Q  168 gggttaataggcttttacccctctgccatattggtgtcttttggtttaccccc 220  Q
    ||||||||||||||||||||| ||||||| | || ||||||||||||||||||    
T  5169313 gggttaataggcttttacccccctgccatttgggcgtcttttggtttaccccc 5169365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 16314255 - 16314203
Alignment:
Q  168 gggttaataggcttttacccctctgccatattggtgtcttttggtttaccccc 220  Q
    ||||||||||||||||||||| ||||||| | || ||||||||||||||||||    
T  16314255 gggttaataggcttttacccccctgccatttgggggtcttttggtttaccccc 16314203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 23506437 - 23506385
Alignment:
Q  168 gggttaataggcttttacccctctgccatattggtgtcttttggtttaccccc 220  Q
    ||||||||||||||||||||| ||||||| | || ||||||||||||||||||    
T  23506437 gggttaataggcttttacccccctgccatttgggggtcttttggtttaccccc 23506385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 171 - 278
Target Start/End: Original strand, 47861936 - 47862044
Alignment:
Q  171 ttaataggcttttacccctctgccatattggtgtcttttggtttaccccc-tacg-gnnnnnnntcttgtagatccccccttgccattagaagatttttt 268  Q
    |||||||||||||||||| ||||||| | || |||||||||||||||||| |||| |        |||| |||||||||||||||||||||||||| |||    
T  47861936 ttaataggcttttacccc-ctgccatttgggggtcttttggtttacccccctacgagaaaaaaaacttggagatccccccttgccattagaagattcttt 47862034  T
Q  269 ggttaacacc 278  Q
    |||| |||||    
T  47862035 ggtttacacc 47862044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 1995868 - 1995920
Alignment:
Q  168 gggttaataggcttttacccctctgccatattggtgtcttttggtttaccccc 220  Q
    ||||||||||||||| ||||| ||||||||| || |||||||||| |||||||    
T  1995868 gggttaataggctttcacccccctgccatatgggggtcttttggtataccccc 1995920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 1997112 - 1997060
Alignment:
Q  168 gggttaataggcttttacccctctgccatattggtgtcttttggtttaccccc 220  Q
    ||||||||||||||||||||| ||||||| | || |||||||||| |||||||    
T  1997112 gggttaataggcttttacccccctgccatttaggggtcttttggtataccccc 1997060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 5170439 - 5170387
Alignment:
Q  168 gggttaataggcttttacccctctgccatattggtgtcttttggtttaccccc 220  Q
    ||||||||||||||||||||| ||||||| |||| || ||||||| |||||||    
T  5170439 gggttaataggcttttacccccctgccattttggagttttttggtataccccc 5170387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 17288631 - 17288683
Alignment:
Q  168 gggttaataggcttttacccctctgccatattggtgtcttttggtttaccccc 220  Q
    ||||||||||||||||||||| ||||||| | || | ||||||||||||||||    
T  17288631 gggttaataggcttttacccccctgccatttgggggacttttggtttaccccc 17288683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 23504895 - 23504947
Alignment:
Q  168 gggttaataggcttttacccctctgccatattggtgtcttttggtttaccccc 220  Q
    ||||||||||||||||||||| ||||||| | || ||||||| ||||||||||    
T  23504895 gggttaataggcttttacccccctgccatttgggggtctttttgtttaccccc 23504947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 24685024 - 24685076
Alignment:
Q  168 gggttaataggcttttacccctctgccatattggtgtcttttggtttaccccc 220  Q
    ||||||||||||||||||||| ||||||||| || || ||||||| |||||||    
T  24685024 gggttaataggcttttacccccctgccatatgggcgtattttggtataccccc 24685076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 39661371 - 39661319
Alignment:
Q  168 gggttaataggcttttacccctctgccatattggtgtcttttggtttaccccc 220  Q
    ||||||||||| ||||| ||| ||||||| | || ||||||||||||||||||    
T  39661371 gggttaataggtttttaaccccctgccatttgggggtcttttggtttaccccc 39661319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 234 - 303
Target Start/End: Complemental strand, 51832497 - 51832429
Alignment:
Q  234 cttgtagatccccccttgccattagaagattttttggttaacaccctccaagccatatgactgtgcaaat 303  Q
    ||||||||| | |||||| |||||||||||| ||| |||||||||| |||||||||||||||||||||||    
T  51832497 cttgtagattctcccttgtcattagaagattctttagttaacaccc-ccaagccatatgactgtgcaaat 51832429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 36438827 - 36438775
Alignment:
Q  168 gggttaataggcttttacccctctgccatattggtgtcttttggtttaccccc 220  Q
    ||||||||||||||||||||| ||||||| | || ||||||||||||||||||    
T  36438827 gggttaataggcttttacccccctgccatttgggggtcttttggtttaccccc 36438775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 15439733 - 15439681
Alignment:
Q  168 gggttaataggcttttacccctctgccatattggtgtcttttggtttaccccc 220  Q
    ||||||||||||||||||||| | ||||| | || ||||||||||||||||||    
T  15439733 gggttaataggcttttacccccccgccatttgggggtcttttggtttaccccc 15439681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 34799865 - 34799917
Alignment:
Q  168 gggttaataggcttttacccctctgccatattggtgtcttttggtttaccccc 220  Q
    |||||||||| |||||||||| ||||||| | || ||||||||||||||||||    
T  34799865 gggttaatagacttttacccccctgccatttgggggtcttttggtttaccccc 34799917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 37086795 - 37086743
Alignment:
Q  168 gggttaataggcttttacccctctgccatattggtgtcttttggtttaccccc 220  Q
    ||||||||||||||||||||| ||||||| |  | ||||||||||||||||||    
T  37086795 gggttaataggcttttacccccctgccatttgagcgtcttttggtttaccccc 37086743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 42278509 - 42278457
Alignment:
Q  168 gggttaataggcttttacccctctgccatattggtgtcttttggtttaccccc 220  Q
    ||||||||||||||||||||| || |||| | || ||||||||||||||||||    
T  42278509 gggttaataggcttttacccccctaccatttgggggtcttttggtttaccccc 42278457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 52042115 - 52042162
Alignment:
Q  168 gggttaataggcttttacccctctgccatattggtgtcttttggtttac 216  Q
    ||||||||||||||||||||| ||| ||||| |||||||||||||||||    
T  52042115 gggttaataggcttttacccc-ctgtcatatgggtgtcttttggtttac 52042162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 48537852 - 48537904
Alignment:
Q  168 gggttaataggcttttacccctctgccatattggtgtcttttggtttacccccta 222  Q
    ||||||||||||||||||||  ||||||| | || ||||||||||||||||||||    
T  48537852 gggttaataggcttttaccc--ctgccatttgggggtcttttggtttacccccta 48537904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 279
Target Start/End: Original strand, 11150344 - 11150384
Alignment:
Q  239 agatccccccttgccattagaagattttttggttaacaccc 279  Q
    ||||||||||||||||||||||||||  |||||| ||||||    
T  11150344 agatccccccttgccattagaagattccttggtttacaccc 11150384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 36437214 - 36437266
Alignment:
Q  168 gggttaataggcttttacccctctgccatattggtgtcttttggtttaccccc 220  Q
    |||||||||| |||||||||| ||||||| | || || |||||||||||||||    
T  36437214 gggttaatagccttttacccccctgccatttgggggttttttggtttaccccc 36437266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 37085413 - 37085465
Alignment:
Q  168 gggttaataggcttttacccctctgccatattggtgtcttttggtttaccccc 220  Q
    ||||||||||| ||||| ||| ||||||| | || ||||||||||||||||||    
T  37085413 gggttaataggtttttatccccctgccatttgggcgtcttttggtttaccccc 37085465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 25482148 - 25482200
Alignment:
Q  168 gggttaataggcttttacccctctgccatattggtgtcttttggtttaccccc 220  Q
    ||||||||||||||||||||| ||||||| | || ||||||||||||||||||    
T  25482148 gggttaataggcttttacccccctgccatttaggagtcttttggtttaccccc 25482200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 12603937 - 12603988
Alignment:
Q  168 gggttaataggcttttacccctctgccatattggtgtcttttggtttaccccc 220  Q
    ||||||||||||||||||||| ||||||| | || ||||||||||||||||||    
T  12603937 gggttaataggcttttacccc-ctgccatttgggagtcttttggtttaccccc 12603988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 21382482 - 21382534
Alignment:
Q  168 gggttaataggcttttacccctctgccatattggtgtcttttggtttaccccc 220  Q
    ||||||||||||||| ||||| ||||||||| || |||||||||| |||||||    
T  21382482 gggttaataggctttcacccccctgccatatgggggtcttttggtataccccc 21382534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 21383874 - 21383822
Alignment:
Q  168 gggttaataggcttttacccctctgccatattggtgtcttttggtttaccccc 220  Q
    ||||||||||||||||||||| ||||||| | || |||||||||| |||||||    
T  21383874 gggttaataggcttttacccccctgccatttaggggtcttttggtataccccc 21383822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 32146146 - 32146094
Alignment:
Q  168 gggttaataggcttttacccctctgccatattggtgtcttttggtttaccccc 220  Q
    ||||||||||||||||| ||| ||||||| | || ||||||||||||||||||    
T  32146146 gggttaataggcttttatccccctgccatttgggggtcttttggtttaccccc 32146094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 9307194 - 9307140
Alignment:
Q  168 gggttaataggcttttacccctctgccatattggtgtcttttggtttacccccta 222  Q
    ||||||||||| ||||||||| ||||||||| || || ||||||| |||||||||    
T  9307194 gggttaataggtttttacccccctgccatatgggcgtattttggtatacccccta 9307140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 25483453 - 25483402
Alignment:
Q  168 gggttaataggcttttacccctctgccatattggtgtcttttggtttaccccc 220  Q
    ||||||||||||||||||||| ||||||| | || ||||||||| ||||||||    
T  25483453 gggttaataggcttttacccc-ctgccatttgggagtcttttggattaccccc 25483402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 224
Target Start/End: Complemental strand, 11308 - 11251
Alignment:
Q  168 gggttaataggcttttacccctctgccatattggtgtcttttggttta-ccccctacg 224  Q
    ||||||||||| ||||||||| ||||||||| || ||||||||||||| |||||||||    
T  11308 gggttaataggtttttacccccctgccatatgggggtcttttggtttatccccctacg 11251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 234 - 279
Target Start/End: Original strand, 5737244 - 5737289
Alignment:
Q  234 cttgtagatccccccttgccattagaagattttttggttaacaccc 279  Q
    ||||||||| ||||||||||||||||||||| ||||||| ||||||    
T  5737244 cttgtagattcccccttgccattagaagattctttggtttacaccc 5737289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 5769360 - 5769308
Alignment:
Q  168 gggttaataggcttttacccctctgccatattggtgtcttttggtttaccccc 220  Q
    ||||||||||||||||||||| ||||||| | || |||||||||| |||||||    
T  5769360 gggttaataggcttttacccccctgccatttgggggtcttttggtataccccc 5769308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 12628033 - 12628085
Alignment:
Q  168 gggttaataggcttttacccctctgccatattggtgtcttttggtttaccccc 220  Q
    ||||||||||||||||||||| ||||||| |  | ||||||||||||||||||    
T  12628033 gggttaataggcttttacccccctgccatttgcgggtcttttggtttaccccc 12628085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 12629483 - 12629431
Alignment:
Q  168 gggttaataggcttttacccctctgccatattggtgtcttttggtttaccccc 220  Q
    ||||||||||||||||||||| ||||||| |  | ||||||||||||||||||    
T  12629483 gggttaataggcttttacccccctgccatttacgggtcttttggtttaccccc 12629431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 21261980 - 21262032
Alignment:
Q  168 gggttaataggcttttacccctctgccatattggtgtcttttggtttaccccc 220  Q
    ||||||||||||||||||||| ||||||| | || |||||||||| |||||||    
T  21261980 gggttaataggcttttacccccctgccatttaggggtcttttggtataccccc 21262032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 21263373 - 21263321
Alignment:
Q  168 gggttaataggcttttacccctctgccatattggtgtcttttggtttaccccc 220  Q
    ||||||||||||||| ||||| ||||||||| || |||||||||| |||||||    
T  21263373 gggttaataggctttcacccccctgccatatgggggtcttttggtataccccc 21263321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 272
Target Start/End: Complemental strand, 5769293 - 5769255
Alignment:
Q  234 cttgtagatccccccttgccattagaagattttttggtt 272  Q
    ||||||||| ||||||||||||||||||||| |||||||    
T  5769293 cttgtagattcccccttgccattagaagattctttggtt 5769255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 7848006 - 7848060
Alignment:
Q  168 gggttaataggcttttacccctctgccatattggtgtcttttggtttacccccta 222  Q
    |||||||| |||||||||||| |||||||||  | |||||||||| |||||||||    
T  7848006 gggttaatgggcttttacccccctgccatatgagggtcttttggtatacccccta 7848060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 19628235 - 19628184
Alignment:
Q  168 gggttaataggcttttacccctctgccatattggtgtcttttggtttaccccc 220  Q
    ||||||||||| ||||||||| ||||||| | || ||||||||||||||||||    
T  19628235 gggttaataggtttttacccc-ctgccatttgggagtcttttggtttaccccc 19628184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 47578639 - 47578587
Alignment:
Q  168 gggttaataggcttttacccctctgccatattggtgtcttttggtttaccccc 220  Q
    ||||||||||||||||||||| ||||||| | || | |||||||| |||||||    
T  47578639 gggttaataggcttttacccccctgccatttgggagacttttggtataccccc 47578587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 289
Target Start/End: Complemental strand, 4434 - 4315
Alignment:
Q  168 gggttaataggcttttacccctctgccatattggtgtcttttggtttaccccctacggnnnnnnntcttgtagatccccccttgccattagaagattttt 267  Q
    ||||||||||||||||| |||  |||||| | || ||||||||||||||||||||  |       | ||| |||| ||| ||||||||||||||||| ||    
T  4434 gggttaataggcttttatccccttgccatttgggggtcttttggtttacccccta-tgaaattttttttggagattccctcttgccattagaagattatt 4336  T
Q  268 tggttaacaccctccaagccat 289  Q
    ||||| |||||| |||||||||    
T  4335 tggtttacaccc-ccaagccat 4315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 2760 - 2812
Alignment:
Q  168 gggttaataggcttttacccctctgccatattggtgtcttttggtttaccccc 220  Q
    |||||||||| |||||| ||| ||| ||||| |||| ||||||||||||||||    
T  2760 gggttaatagacttttatccccctgtcatatgggtgacttttggtttaccccc 2812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 22458 - 22510
Alignment:
Q  168 gggttaataggcttttacccctctgccatattggtgtcttttggtttaccccc 220  Q
    ||||||||||||||||||||| | ||||| | || ||||||||||||||||||    
T  22458 gggttaataggcttttacccccccgccatttgggggtcttttggtttaccccc 22510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0484 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0484
Description:

Target: scaffold0484; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 11536 - 11589
Alignment:
Q  168 gggttaataggcttttacccctctgccatattggtgtcttttggtttacccccta 222  Q
    ||||||||||||||||||||| ||||||| | || ||||||||| ||||||||||    
T  11536 gggttaataggcttttacccc-ctgccatttgggagtcttttggattacccccta 11589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0484; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 12851 - 12798
Alignment:
Q  168 gggttaataggcttttacccctctgccatattggtgtcttttggtttacccccta 222  Q
    |||||||||||||||||||| || ||||| | || ||||||||||||||||||||    
T  12851 gggttaataggcttttaccc-tccgccatttaggagtcttttggtttacccccta 12798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 217
Target Start/End: Original strand, 386 - 435
Alignment:
Q  168 gggttaataggcttttacccctctgccatattggtgtcttttggtttacc 217  Q
    ||||||||||||||||||||| ||||||| | || | |||||||||||||    
T  386 gggttaataggcttttacccccctgccatttgggggacttttggtttacc 435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 27490099 - 27490152
Alignment:
Q  168 gggttaataggcttttacccctctgccatattggtgtcttttggtttaccccct 221  Q
    ||||||||||||||||||| | ||| ||||| || |||||||||| ||||||||    
T  27490099 gggttaataggcttttacctccctgtcatatgggggtcttttggtataccccct 27490152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 219
Target Start/End: Original strand, 10087 - 10136
Alignment:
Q  168 gggttaataggcttttacccctctgccatattggtgtcttttggtttacccc 219  Q
    ||||||||||||||||||||  ||||||| | || |||||||||||||||||    
T  10087 gggttaataggcttttaccc--ctgccatttgggggtcttttggtttacccc 10136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University