View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1099_low_13 (Length: 297)
Name: NF1099_low_13
Description: NF1099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1099_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 68 - 236
Target Start/End: Original strand, 43869436 - 43869604
Alignment:
| Q |
68 |
ctcacgattacgaactagagaaaacagacaaatgtggtcctggaaacgacgacgatcacggtgatgagatgcaattctcaaatcaaatatgaaaacataa |
167 |
Q |
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| T |
43869436 |
ctcacgattacgaactagagaagacagacaaatgtggtcctggaaacgacgacgatcacggtgatgagatgcaattctcaaatcaaatatgaaaacataa |
43869535 |
T |
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| Q |
168 |
atcgtagaaacaacaatcaatgataaatcagagggaagtaacaaaaacaagaaagacatagatcatatt |
236 |
Q |
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| T |
43869536 |
atcgtagaaacaacaatcaatgataaatcagagggaagtaacaaaaacaagaaagacatagatcatatt |
43869604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 87 - 232
Target Start/End: Complemental strand, 43869287 - 43869146
Alignment:
| Q |
87 |
gaaaacagacaaatgtggtcctggaaacgacgacgatcacggtgatgagatgcaattctcaaatcaaatatgaaaacataaatcgtagaaacaacaatca |
186 |
Q |
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| T |
43869287 |
gaaaacaaacgaatgtggtcatgtaaacgacggcgatgtcagtgatgagatgcgattctcaaatcaaatatgaaaacataa----tagaaacaaaaatta |
43869192 |
T |
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| Q |
187 |
atgataaatcagagggaagtaacaaaaacaagaaagacatagatca |
232 |
Q |
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| T |
43869191 |
atgataagttggagggaaataataaaaactaaaaagacatagatca |
43869146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 215
Target Start/End: Complemental strand, 31342621 - 31342581
Alignment:
| Q |
175 |
aaacaacaatcaatgataaatcagagggaagtaacaaaaac |
215 |
Q |
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| T |
31342621 |
aaacaaaaattaatgataaatcagagggaaataacaaaaac |
31342581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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