View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1099_low_15 (Length: 292)
Name: NF1099_low_15
Description: NF1099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1099_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 82; Significance: 9e-39; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 58 - 143
Target Start/End: Complemental strand, 1140336 - 1140251
Alignment:
| Q |
58 |
gttgctgcagaatccgcacagcagttgtctttgaaacgtcggcctttcacctttaaccataggcgaaaagaaaccgtccattaaat |
143 |
Q |
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| T |
1140336 |
gttgctgcagaatccgcacagcagttgtctttgaaacgtcgacctttcacctttaaccataggcgaaaagaaaccgtccattaaat |
1140251 |
T |
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Target: chr3; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 145 - 244
Target Start/End: Complemental strand, 1139723 - 1139624
Alignment:
| Q |
145 |
ttcttcaattatatacgattaacaatttcaaaactggtatgaatcttcattgtcatttgggattctcttttgaattttaagatcattttattcatctcac |
244 |
Q |
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| T |
1139723 |
ttcttcaattatatacgattaacaatttcaaaattgatatgaatcttcattgtcatttgagattttcttttgaattttaagattattttattcatatcac |
1139624 |
T |
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