View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1099_low_20 (Length: 275)
Name: NF1099_low_20
Description: NF1099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1099_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 139; Significance: 8e-73; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 66 - 240
Target Start/End: Complemental strand, 37780695 - 37780521
Alignment:
| Q |
66 |
atggaagaaaaaggtgaacaattcagtagcatacccaaacaatccacaaagaaatgtcatataaagaaccttccaagtaatctttggtttcttcttcctt |
165 |
Q |
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| T |
37780695 |
atggaagaaaaaggtgaacaattcagtagcatacccaaacaatccacaaagaaatgtcatataaagaaccttccaagtaatctttggtttcttcttcctt |
37780596 |
T |
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| Q |
166 |
cataacnnnnnnnngccagaaccattttggtctagtagttaatctaatgcacacatctcatgttaatttgtctct |
240 |
Q |
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| T |
37780595 |
cataacaaaaaaaaggcagaaccattttggtttagtagttaatctaatgcacgcatctcatgttaatttgtctct |
37780521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 91 - 153
Target Start/End: Complemental strand, 37807404 - 37807342
Alignment:
| Q |
91 |
gtagcatacccaaacaatccacaaagaaatgtcatataaagaaccttccaagtaatctttggt |
153 |
Q |
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| T |
37807404 |
gtagcgtacccaaacaatccacatagaaatgaaagaaaaagaaccttccaagtaatctttggt |
37807342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 94 - 171
Target Start/End: Complemental strand, 37788982 - 37788905
Alignment:
| Q |
94 |
gcatacccaaacaatccacaaagaaatgtcatataaagaaccttccaagtaatctttggtttcttcttccttcataac |
171 |
Q |
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| T |
37788982 |
gcatacccaaacaatccgcatagaaatgccagagaaagcacattccgagtaatctttggtctttccttcctgcataac |
37788905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 96 - 153
Target Start/End: Complemental strand, 37797209 - 37797152
Alignment:
| Q |
96 |
atacccaaacaatccacaaagaaatgtcatataaagaaccttccaagtaatctttggt |
153 |
Q |
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| T |
37797209 |
atacccaaacaacccagataggaatgccataaaaagcaccttccaagtaatctttggt |
37797152 |
T |
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