View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1099_low_24 (Length: 259)
Name: NF1099_low_24
Description: NF1099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1099_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 7258065 - 7257902
Alignment:
| Q |
1 |
aacctcagactttggaaggccaaagcatcagaacaacttggagtagtaagttgatttcattgttgattcattcatcctctttttttacacacac-----a |
95 |
Q |
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| T |
7258065 |
aacctcagactttggaaggccaaagcatcagaacaacttggagtagtaagttgattt-----------cattcatcctctttttttacacacacaaaaaa |
7257977 |
T |
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| Q |
96 |
cnnnnnnnnnnnnnnctgtcatctattaattgtggttcatgttgtactaagattgaaattctattataactgtga |
170 |
Q |
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| T |
7257976 |
aaaaaaaaaaaaaaactgtcatctattaattgtggttcatgttgtactaagattgaaattctattataactgtga |
7257902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 176 - 238
Target Start/End: Complemental strand, 7257862 - 7257800
Alignment:
| Q |
176 |
ttaataatttctcttctgagaggcccttcaattcattccgagattcacctgtttatgatgatg |
238 |
Q |
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| T |
7257862 |
ttaataatttctcttctgagaggcccttcagttcattccgagattcacctgtttatgatgatg |
7257800 |
T |
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