View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1099_low_27 (Length: 251)
Name: NF1099_low_27
Description: NF1099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1099_low_27 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0941 (1 HSPs) |
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| [»] scaffold0597 (1 HSPs) |
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| [»] scaffold0548 (1 HSPs) |
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| [»] scaffold0098 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] scaffold0066 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 9 - 251
Target Start/End: Original strand, 22164664 - 22164906
Alignment:
| Q |
9 |
caagaatattagtgttaaaatttggcaataaccaaccagatgtaaaaaactgcataacagctttatacacgtcctgtttgattatttcccaaaaagtttg |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || || |||||||||||||||||| ||||||| |
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| T |
22164664 |
caagaatattagtgttaaaatttggcaataaccaaccagttgtaaaaaactgcataacagctttatatacatcatgtttgattatttcccaataagtttg |
22164763 |
T |
|
| Q |
109 |
aaaaaatattgcaccaaaaccatcgggtccaggtgcactatctttatttaaagaaaaaatagcattataaacttcatccatagaaggtaaaagagtaagc |
208 |
Q |
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|||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||| |||||| |
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| T |
22164764 |
aaaaaatattgcaccaaaaccatccggtccaggggcactatcattatttaaagaaaaaatagcattatgaacttcatccatagttggtaaaagtgtaagc |
22164863 |
T |
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| Q |
209 |
atgttgttgatcctatcagtgataagatttggaatcacatctt |
251 |
Q |
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| T |
22164864 |
atgttgttgatcctatcagtgatgagattaggaatcacatctt |
22164906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0941 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0941
Description:
Target: scaffold0941; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 23 - 243
Target Start/End: Complemental strand, 3030 - 2810
Alignment:
| Q |
23 |
ttaaaatttggcaataaccaaccagatgtaaaaaactgcataacagctttatacacgtcctgtttgattatttcccaaaaagtttgaaaaaatattgcac |
122 |
Q |
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|||||||| || | ||||||||||||||| |||||||| | |||||||||| | || || ||||||||||||||||| || |||||||||| ||||| | |
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| T |
3030 |
ttaaaattgggaagtaaccaaccagatgtgaaaaactgtaaaacagctttacatacatcatgtttgattatttcccagtaattttgaaaaaaaattgctc |
2931 |
T |
|
| Q |
123 |
caaaaccatcgggtccaggtgcactatctttatttaaagaaaaaatagcattataaacttcatccatagaaggtaaaagagtaagcatgttgttgatcct |
222 |
Q |
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|||| ||||| || || ||||||||||| ||||||||||||| | ||||| ||| |||||| ||||||||| | |||||||| |||||||| || |
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| T |
2930 |
caaagccatctggccctggtgcactatcactatttaaagaaaacactgcatttgaaatttcatcacaagaaggtaacattgtaagcatattgttgattct |
2831 |
T |
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| Q |
223 |
atcagtgataagatttggaat |
243 |
Q |
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|| ||||||||||||||||| |
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| T |
2830 |
ttctgtgataagatttggaat |
2810 |
T |
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Target: scaffold0597 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0597
Description:
Target: scaffold0597; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 14 - 132
Target Start/End: Complemental strand, 4706 - 4585
Alignment:
| Q |
14 |
atattagtgttaaaatttggcaataaccaaccagatgtaaaaaa---ctgcataacagctttatacacgtcctgtttgattatttcccaaaaagtttgaa |
110 |
Q |
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||||||| |||||||| ||||||||||||||||| |||||||| |||||||||| ||||| ||| || || |||||||||||||| ||||||||| |
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| T |
4706 |
atattagcattaaaattgggcaataaccaaccagaggtaaaaaaaaactgcataacacctttaaacatatcatgcttgattatttcccagtaagtttgaa |
4607 |
T |
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| Q |
111 |
aaaatattgcaccaaaaccatc |
132 |
Q |
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|||| ||||| ||||||||||| |
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| T |
4606 |
aaaagattgctccaaaaccatc |
4585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0548 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0548
Description:
Target: scaffold0548; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 225
Target Start/End: Original strand, 1331 - 1534
Alignment:
| Q |
23 |
ttaaaatttggcaataaccaaccagatgtaaaaaactgcataacagctttatacacgtcctgtttgattatttcccaaaaagtttgaaaaaatat--tgc |
120 |
Q |
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|||||||| || | |||||||||||||| ||||||||||| ||||||||| | || | |||||||||||| |||| | |||||||||| | ||| |
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| T |
1331 |
ttaaaattgggaagtaaccaaccagatgcaaaaaactgcaatacagctttacaaacattatgtttgattatt-cccagtagttttgaaaaaaaaaactgc |
1429 |
T |
|
| Q |
121 |
accaaaaccatcgggtccaggtgcactatctttatttaaagaaaaaatagcattataaacttcatccatagaaggtaaaagagtaagcatgttgttgatc |
220 |
Q |
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|||||| ||||| || || || ||||| ||||||||||||||||||| ||||||| ||| ||| || ||||||||| | || |||||||| ||||| |
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| T |
1430 |
accaaagccatctggccctggagcactgtctttatttaaagaaaaaacagcattagaaatttcctcatcagaaggtaacatggtgagcatgttattgatt |
1529 |
T |
|
| Q |
221 |
ctatc |
225 |
Q |
| |
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||||| |
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| T |
1530 |
ctatc |
1534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 225
Target Start/End: Original strand, 15089442 - 15089645
Alignment:
| Q |
23 |
ttaaaatttggcaataaccaaccagatgtaaaaaactgcataacagctttatacacgtcctgtttgattatttcccaaaaagtttgaaaaaatat--tgc |
120 |
Q |
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|||||||| || | |||||||||||||| ||||||||||| ||||||||| | || | |||||||||||| |||| | |||||||||| | ||| |
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| T |
15089442 |
ttaaaattgggaagtaaccaaccagatgcaaaaaactgcaatacagctttacaaacattatgtttgattatt-cccagtagttttgaaaaaaaaaactgc |
15089540 |
T |
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| Q |
121 |
accaaaaccatcgggtccaggtgcactatctttatttaaagaaaaaatagcattataaacttcatccatagaaggtaaaagagtaagcatgttgttgatc |
220 |
Q |
| |
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|||||| ||||| || || || ||||| ||||||||||||||||||| ||||||| ||| ||| || ||||||||| | || |||||||| ||||| |
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| T |
15089541 |
accaaagccatctggccctggagcactgtctttatttaaagaaaaaacagcattagaaatttcctcatcagaaggtaacatggtgagcatgttattgatt |
15089640 |
T |
|
| Q |
221 |
ctatc |
225 |
Q |
| |
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||||| |
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| T |
15089641 |
ctatc |
15089645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0098 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0098
Description:
Target: scaffold0098; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 239
Target Start/End: Original strand, 32192 - 32407
Alignment:
| Q |
23 |
ttaaaatttggcaataaccaaccagatgtaaaaaactgcataacagctttatacacgtcctgtttgattatttcccaaaaagtttgaaaaaatattgcac |
122 |
Q |
| |
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|||||||| || | ||||||||||||||| |||||||| | | | ||||||| || || ||||||||||||||||| || |||||||||| ||||| | |
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| T |
32192 |
ttaaaattgggaagtaaccaaccagatgtgaaaaactgtaagaaaactttatagacatcatgtttgattatttcccagtaattttgaaaaaa-attgctc |
32290 |
T |
|
| Q |
123 |
caaaaccatcgggtccaggtgcactatctttatttaaagaaaaaatagcattataaacttcatccatagaaggtaaaagagtaagcatgttgttgatcct |
222 |
Q |
| |
|
|||| || || | | ||||||||||| ||||||||||||| | ||||| ||| ||| || ||||||||| | |||||||| |||||||| || |
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|
| T |
32291 |
caaagccgtctagccatggtgcactatcactatttaaagaaaacactgcatttgaaatttcttcataagaaggtaacattgtaagcatattgttgattct |
32390 |
T |
|
| Q |
223 |
atcagtgataagatttg |
239 |
Q |
| |
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|| ||||||||||||| |
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| T |
32391 |
ttctgtgataagatttg |
32407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 85 - 251
Target Start/End: Original strand, 5152668 - 5152834
Alignment:
| Q |
85 |
tttgattatttcccaaaaagtttgaaaaaatattgcaccaaaaccatcgggtccaggtgcactatctttatttaaagaaaaaatagcattataaacttca |
184 |
Q |
| |
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|||||| |||||||||||||||||| | |||| || ||||| ||||| || || || |||||||| || || |||||||||| |||| ||| ||||| |
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| T |
5152668 |
tttgatgatttcccaaaaagtttgatagaatagagctccaaatccatcaggacctggggcactatccttgttcaaagaaaaaacagcactatggacttct |
5152767 |
T |
|
| Q |
185 |
tccatagaaggtaaaagagtaagcatgttgttgatcctatcagtgataagatttggaatcacatctt |
251 |
Q |
| |
|
||| |||||| | | ||| || |||||||| ||||| |||||||||||| |||||| ||||||| |
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|
| T |
5152768 |
tcctgagaaggaatcatagtgagaatgttgtttatcctgtcagtgataagagatggaattacatctt |
5152834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 95 - 165
Target Start/End: Complemental strand, 12302493 - 12302423
Alignment:
| Q |
95 |
tcccaaaaagtttgaaaaaatattgcaccaaaaccatcgggtccaggtgcactatctttatttaaagaaaa |
165 |
Q |
| |
|
||||||||||||||||| |||| ||| ||||| ||||| || || || ||||||||||| ||||||||||| |
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| T |
12302493 |
tcccaaaaagtttgaaagaatagtgctccaaatccatctggacctggggcactatctttgtttaaagaaaa |
12302423 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 132
Target Start/End: Original strand, 30883581 - 30883687
Alignment:
| Q |
25 |
aaaatttggcaataaccaaccagatgtaaaaaactgcataacagctttatacacgtcctgtttgattatttcccaaaaagtttgaaaaaatattgcacca |
124 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||| ||||||| || |||| | |||||| | ||||||||| | |||||||||| | ||| ||| |
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| T |
30883581 |
aaaatttggtaataaccaaccagatgtgaaaaactgcaaaacagctctaaacacat-ctgtttaactatttcccaggatttttgaaaaaagaatgctcca |
30883679 |
T |
|
| Q |
125 |
aaaccatc |
132 |
Q |
| |
|
|| ||||| |
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| T |
30883680 |
aatccatc |
30883687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0066 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0066
Description:
Target: scaffold0066; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 95 - 165
Target Start/End: Original strand, 37450 - 37520
Alignment:
| Q |
95 |
tcccaaaaagtttgaaaaaatattgcaccaaaaccatcgggtccaggtgcactatctttatttaaagaaaa |
165 |
Q |
| |
|
||||||||||||||||| |||| ||| ||||| ||||| || || || ||||||||||| ||||||||||| |
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|
| T |
37450 |
tcccaaaaagtttgaaagaatagtgctccaaatccatctggacctggggcactatctttgtttaaagaaaa |
37520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 156
Target Start/End: Complemental strand, 28714360 - 28714296
Alignment:
| Q |
92 |
atttcccaaaaagtttgaaaaaatattgcaccaaaaccatcgggtccaggtgcactatctttatt |
156 |
Q |
| |
|
||||||||| |||||||||| || | ||| ||||| |||||||||||||| || | ||||||||| |
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|
| T |
28714360 |
atttcccaataagtttgaaagaagaatgccccaaacccatcgggtccaggggccccatctttatt |
28714296 |
T |
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