View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1099_low_3 (Length: 575)
Name: NF1099_low_3
Description: NF1099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1099_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 177 - 449
Target Start/End: Complemental strand, 4815413 - 4815139
Alignment:
| Q |
177 |
aattagacacataaccacaacacacataaattaaaacggggagaacaaaactcacaaaccatatc-atgattctagcttgtagaactgcggttttgaggt |
275 |
Q |
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||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||| ||||||||| |
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| T |
4815413 |
aattagacacataaccagaacacacataaatcaaaacggggagaacgaaactcacaaacctgatcgatgattctagcttgtagaactgcaattttgaggt |
4815314 |
T |
|
| Q |
276 |
ggagagagaaccataaaaacgaatttgaaaaagagagagcaacctaattacttgaaccccaaatatcaatttcaatttcaaatctgttctgcaggagaga |
375 |
Q |
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||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||| |||||| |
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| T |
4815313 |
ggagagagaaccatacaaacgaatttgaaaaagagtgagcaacctaaatacttgaaccccaaatatcaatttcaatttcaaatatgttgtgcaagagaga |
4815214 |
T |
|
| Q |
376 |
atttggacgaattgagggttc-tgggcagagagtgctaagggagagagacggaaaaagtgttataggacagagag |
449 |
Q |
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| T |
4815213 |
atttggaagaatttagggttcttgggcagagagtgccaagggagagagacgaaaaaagtgttctaggacagagag |
4815139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 153; Significance: 8e-81; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 178 - 449
Target Start/End: Complemental strand, 23517727 - 23517448
Alignment:
| Q |
178 |
attagacacataaccacaacacacataaattaaaacggggagaacaaaactcacaaaccatatc-atgattctagcttgtagaactgcggttttgaggtg |
276 |
Q |
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| T |
23517727 |
attagacacataaccagaacacacataaatcaaaatggggagaatgaaactcacaaacctgatcgatgattctagcttgtagaactgcaattttgaggtg |
23517628 |
T |
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| Q |
277 |
gagagagaaccataaaaacgaatttgaaaaagagagagcaacctaattacttgaaccccaaatat------caatttcaatttcaaatctgttctgcagg |
370 |
Q |
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| T |
23517627 |
gagcgagaaccgtacaaacgaatttgaaaaagagtgagcaacctaaatacttgaaccccaaatatcaatatcaatttcaatttcaaatatgttgtgcaag |
23517528 |
T |
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| Q |
371 |
agagaatttggacgaattgagggttc-tgggcagagagtgctaagggagagagacggaaaaagtgttataggacagagag |
449 |
Q |
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| T |
23517527 |
agagaatttggaagaatttagggttcttgggcagagagtgccaagggagagagacgaaaaaagtgttctaggacagagag |
23517448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 178 - 449
Target Start/End: Complemental strand, 23486368 - 23486095
Alignment:
| Q |
178 |
attagacacataaccacaacacacataaattaaaacggggagaacaaaactcacaaaccatatc-atgattctagcttgtagaactgcggttttgaggtg |
276 |
Q |
| |
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|||||||||||||||| ||||||||||||| |||| || ||||| ||||| ||||||| ||| ||||||||||||||||||||||| ||| |||||| |
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| T |
23486368 |
attagacacataaccagaacacacataaatcaaaatggtgagaatgaaacttacaaacctgatcgatgattctagcttgtagaactgcaatttcgaggtg |
23486269 |
T |
|
| Q |
277 |
gagagagaaccataaaaacgaatttgaaaaagagagagcaacctaattacttgaaccccaaatatcaatttcaatttcaaatctgttctgcaggagagaa |
376 |
Q |
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||||||||| | || ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||| ||||||| |
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| T |
23486268 |
gagagagaatcgtacaaacgaatttgaaaaagagtgagcaacctaaatacttgaaccccaaatatcaatttcaatttcaaatatgttgtgcaagagagaa |
23486169 |
T |
|
| Q |
377 |
tttggacgaattgagggttc-tgggcagagagtgctaagggagagagacggaaaaagtgttataggacagagag |
449 |
Q |
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||| || ||||| ||||||| |||||||||||||| |||||||||||||| ||||| |||| |||||||||||| |
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| T |
23486168 |
tttcgaagaatttagggttcttgggcagagagtgccaagggagagagacgaaaaaaatgttctaggacagagag |
23486095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 133 - 188
Target Start/End: Original strand, 37686335 - 37686390
Alignment:
| Q |
133 |
ttcaaaaatcatgataaaactgctagaaacataaaaagtgacacaattagacacat |
188 |
Q |
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| T |
37686335 |
ttcaaaaatcatctaaaaactgcttgaaacataaaaagagacacaattagacacat |
37686390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 148 - 188
Target Start/End: Complemental strand, 7497391 - 7497351
Alignment:
| Q |
148 |
aaaactgctagaaacataaaaagtgacacaattagacacat |
188 |
Q |
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| T |
7497391 |
aaaactgcttgaaacataaaaagagacacaattggacacat |
7497351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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