View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1099_low_4 (Length: 572)
Name: NF1099_low_4
Description: NF1099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1099_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 97 - 561
Target Start/End: Complemental strand, 41312683 - 41312242
Alignment:
| Q |
97 |
ttaactcggtgttttctttgccaataactgaatgacatggagggaataacgaaaacaaataatttttcttaaagtctgcttcccaacaaagagtaattca |
196 |
Q |
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| T |
41312683 |
ttaactcggtgttttctttgc-aataactgaatgacatggagggaatcacgaaaataaataatttt-cttgaagtttgcttcccaacaaagagtaattca |
41312586 |
T |
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| Q |
197 |
aaataatagagtttaaatctctacgtgtagaatatttgacaatcccacgagcctataaaaaccaaactaaaaattattgtcaaagttgaacacagaagtc |
296 |
Q |
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| T |
41312585 |
aattaatagagtttgaatctctacgtgtagaatgtttgacaatcccgcgagcctataaaaaccaaactaaaaattattgtcaaagttgaacacagaaatc |
41312486 |
T |
|
| Q |
297 |
caacatgaactgattgttctgtgtttattaaagcattgccatcaacgtttagtatcaaagtatcattatcattatgttgccaacacattttcctataagg |
396 |
Q |
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| T |
41312485 |
caacatgaactgattgttctgtgtttattaa-------------------agtatc--attatcattatcattatgttgccaacacattttcctctgagg |
41312407 |
T |
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| Q |
397 |
gcacaaaaggggcagggaatgtgagttgtcaaatgctcgttgtgatatgtgaagctatgaaaaatttaaggcaatcgtggacgcattccttgaatgtgta |
496 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
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| T |
41312406 |
gcacaaaaggggcagggaatgtgagttgtcaaatgctcgttgtggtatgtgaagctatgaaaaaattaaggcaattgtggacgcattccttgaatgtgta |
41312307 |
T |
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| Q |
497 |
cctttaaatacaagtttgttccttgtgcaccattgatccacataatcaaaggagttatgattcat |
561 |
Q |
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| T |
41312306 |
cctttagatacaagtttgttccttgtgcaccactgatccacataatcaaaggagttatgattcat |
41312242 |
T |
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