View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1099_low_5 (Length: 547)

Name: NF1099_low_5
Description: NF1099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1099_low_5
NF1099_low_5
[»] chr4 (3 HSPs)
chr4 (9-466)||(25216647-25217106)
chr4 (84-277)||(1970069-1970261)
chr4 (10-71)||(1969987-1970048)
[»] chr6 (2 HSPs)
chr6 (196-249)||(24887415-24887468)
chr6 (196-249)||(24937639-24937692)
[»] chr5 (2 HSPs)
chr5 (174-261)||(9878016-9878103)
chr5 (196-243)||(28322251-28322298)
[»] chr7 (1 HSPs)
chr7 (246-288)||(44317232-44317274)
[»] chr3 (3 HSPs)
chr3 (223-273)||(13635611-13635661)
chr3 (223-252)||(36895399-36895428)
chr3 (175-243)||(18268007-18268075)
[»] chr8 (1 HSPs)
chr8 (223-256)||(27733884-27733917)
[»] chr2 (1 HSPs)
chr2 (185-249)||(32102856-32102920)
[»] chr1 (2 HSPs)
chr1 (195-251)||(3451864-3451920)
chr1 (214-262)||(26777360-26777408)


Alignment Details
Target: chr4 (Bit Score: 384; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 9 - 466
Target Start/End: Complemental strand, 25217106 - 25216647
Alignment:
Q  9 cattattgtaacaatgctctagacagaaaaagttcatataatttgttaaagcaatatgaatcttgnnnnnnnttcttttggataatgacggaaatcagcc 108  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||    
T  25217106 cattatagtaacaatgctctagatagaaaaagttcatataatttgttaaagcaatatgaatcttgaaaaaaattcttttggataatgacggaaatcagcc 25217007  T
Q  109 aaaactttcctatgaaggattttgggttgtattcggttagtgattaactgttgcaatctatgaagcactgacacgccaacactaacaataatttgaggaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  25217006 aaaactttcctatgaaggattttgggttgtattcggttagtgattaactgttgcaatctatgaagcactgacacgccaacactaataataatttgaggaa 25216907  T
Q  209 ataaattaattgtctgtaatcacatgtgttggtgtcatgtcggacaccagacacgctttcaatcaaaaatgccggtgcaagagtttgctatcatattttt 308  Q
    |||||||||||||||||| |||||||||||||||||||||| ||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  25216906 ataaattaattgtctgtagtcacatgtgttggtgtcatgtcagacgccagacacactttcaatcaaaaatgtcggtgcaagagtttgctatcatattttt 25216807  T
Q  309 aatac--aatacactacgataccgcaagaggcaatcttatttgaggccaataaagcaactaggtgatgcctctcttcaagaaagttaaattttcacaatc 406  Q
    |||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25216806 aatacaaaatacactacgataccgcaagagacaatcttatttgaggccaataaagcaactaggtgatgcctctcttcaagaaagttaaattttcacaatc 25216707  T
Q  407 aaatcaaagatagtgttcttttatcatcctatatttgcattcctttattgttagtataat 466  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  25216706 aaatcaaagatagtgttcttttatcatcgtatatttgcatgcctttattgttagtataat 25216647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 84 - 277
Target Start/End: Original strand, 1970069 - 1970261
Alignment:
Q  84 ttttggataatgacggaaatcagccaaaactttcctatgaaggattttgggttgtattcggttagtgattaactgttgcaatctatgaagcactgacacg 183  Q
    ||||||||||||| ||||||||||||||||||||||||||||||  | ||||| ||||||||||||||||||||| ||||| ||||||||||||||||||    
T  1970069 ttttggataatgatggaaatcagccaaaactttcctatgaaggaaatcgggttatattcggttagtgattaactgctgcaa-ctatgaagcactgacacg 1970167  T
Q  184 ccaacactaacaataatttgaggaaataaattaattgtctgtaatcacatgtgttggtgtcatgtcggacaccagacacgctttcaatcaaaaa 277  Q
    |||||||||| |||||| || |  ||||||||||| |  ||||||||||  ||||||||||||||||||||||||| || | |||||| |||||    
T  1970168 ccaacactaataataatctgcgagaataaattaatcgagtgtaatcacacatgttggtgtcatgtcggacaccagatacaccttcaataaaaaa 1970261  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 71
Target Start/End: Original strand, 1969987 - 1970048
Alignment:
Q  10 attattgtaacaatgctctagacagaaaaagttcatataatttgttaaagcaatatgaatct 71  Q
    ||||| |||||||||||  ||| |||||||| || || ||||||||||||| ||||||||||    
T  1969987 attatggtaacaatgctacagatagaaaaagatcgtagaatttgttaaagctatatgaatct 1970048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 196 - 249
Target Start/End: Complemental strand, 24887468 - 24887415
Alignment:
Q  196 ataatttgaggaaataaattaattgtctgtaatcacatgtgttggtgtcatgtc 249  Q
    |||||||||||||||||||||||||  |||  |||||||||| |||||||||||    
T  24887468 ataatttgaggaaataaattaattgaatgttctcacatgtgtaggtgtcatgtc 24887415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 249
Target Start/End: Complemental strand, 24937692 - 24937639
Alignment:
Q  196 ataatttgaggaaataaattaattgtctgtaatcacatgtgttggtgtcatgtc 249  Q
    |||||||||||||||||||||||||  ||| |||||||| |  |||||||||||    
T  24937692 ataatttgaggaaataaattaattgaatgttatcacatgcgcaggtgtcatgtc 24937639  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 261
Target Start/End: Complemental strand, 9878103 - 9878016
Alignment:
Q  174 cactgacacgccaacactaacaataatttgaggaaataaattaattgtctgtaatcacatgtgttggtgtcatgtcggacaccagaca 261  Q
    |||||||||| | |||| || ||||||||||| | || |||||||||  ||||||||| |||||  ||| |||||||||||| |||||    
T  9878103 cactgacacgtcgacaccaataataatttgagaatatgaattaattgaatgtaatcacttgtgtcagtgccatgtcggacactagaca 9878016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 243
Target Start/End: Original strand, 28322251 - 28322298
Alignment:
Q  196 ataatttgaggaaataaattaattgtctgtaatcacatgtgttggtgt 243  Q
    |||||||||| |||| |||||||||  |||||||||||||||||||||    
T  28322251 ataatttgagaaaatgaattaattgaatgtaatcacatgtgttggtgt 28322298  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 246 - 288
Target Start/End: Complemental strand, 44317274 - 44317232
Alignment:
Q  246 tgtcggacaccagacacgctttcaatcaaaaatgccggtgcaa 288  Q
    ||||||||||||||||||| ||||||||||| || ||||||||    
T  44317274 tgtcggacaccagacacgccttcaatcaaaagtgtcggtgcaa 44317232  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 223 - 273
Target Start/End: Original strand, 13635611 - 13635661
Alignment:
Q  223 tgtaatcacatgtgttggtgtcatgtcggacaccagacacgctttcaatca 273  Q
    ||||||||||||| |||||||| |||| |||||||||||||| ||| ||||    
T  13635611 tgtaatcacatgttttggtgtcgtgtcagacaccagacacgccttctatca 13635661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 252
Target Start/End: Original strand, 36895399 - 36895428
Alignment:
Q  223 tgtaatcacatgtgttggtgtcatgtcgga 252  Q
    ||||||||||||||||||||||||||||||    
T  36895399 tgtaatcacatgtgttggtgtcatgtcgga 36895428  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 175 - 243
Target Start/End: Complemental strand, 18268075 - 18268007
Alignment:
Q  175 actgacacgccaacactaacaataatttgaggaaataaattaattgtctgtaatcacatgtgttggtgt 243  Q
    ||||||| | ||||||| | ||||||||||| |||| |||||||||   |||||||||||||| |||||    
T  18268075 actgacatgtcaacactgataataatttgagaaaatgaattaattgaacgtaatcacatgtgtcggtgt 18268007  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 256
Target Start/End: Original strand, 27733884 - 27733917
Alignment:
Q  223 tgtaatcacatgtgttggtgtcatgtcggacacc 256  Q
    |||||||||| |||||||||||||||||||||||    
T  27733884 tgtaatcacaagtgttggtgtcatgtcggacacc 27733917  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 185 - 249
Target Start/End: Complemental strand, 32102920 - 32102856
Alignment:
Q  185 caacactaacaataatttgaggaaataaattaattgtctgtaatcacatgtgttggtgtcatgtc 249  Q
    |||||||||  |||||||||| ||||||||||||||  | ||||||||| |||  ||||||||||    
T  32102920 caacactaatgataatttgagaaaataaattaattgaatataatcacatttgtcagtgtcatgtc 32102856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 195 - 251
Target Start/End: Original strand, 3451864 - 3451920
Alignment:
Q  195 aataatttgaggaaataaattaattgtctgtaatcacatgtgttggtgtcatgtcgg 251  Q
    ||||||||||| |||  |||||||||  | |||||||||||||||||||| ||||||    
T  3451864 aataatttgagaaaacgaattaattgaatttaatcacatgtgttggtgtcgtgtcgg 3451920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 214 - 262
Target Start/End: Complemental strand, 26777408 - 26777360
Alignment:
Q  214 ttaattgtctgtaatcacatgtgttggtgtcatgtcggacaccagacac 262  Q
    |||||||  ||||||||||||||| |||||| ||||||||||| |||||    
T  26777408 ttaattgaatgtaatcacatgtgtgggtgtcgtgtcggacaccggacac 26777360  T

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