View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1099_low_8 (Length: 462)

Name: NF1099_low_8
Description: NF1099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1099_low_8
NF1099_low_8
[»] chr3 (30 HSPs)
chr3 (230-448)||(8455702-8455929)
chr3 (315-448)||(8590777-8590920)
chr3 (369-448)||(6478884-6478963)
chr3 (371-451)||(6519066-6519146)
chr3 (371-444)||(6737042-6737115)
chr3 (371-444)||(6948327-6948400)
chr3 (372-444)||(6553343-6553415)
chr3 (28-103)||(8456052-8456127)
chr3 (80-230)||(30257623-30257773)
chr3 (80-233)||(8456195-8456348)
chr3 (80-233)||(35492910-35493063)
chr3 (80-233)||(45272461-45272614)
chr3 (106-183)||(50162067-50162144)
chr3 (82-233)||(26174114-26174265)
chr3 (236-307)||(6488670-6488741)
chr3 (313-368)||(6553262-6553316)
chr3 (315-353)||(6948439-6948477)
chr3 (80-233)||(34492620-34492773)
chr3 (80-233)||(40133494-40133647)
chr3 (80-233)||(45529799-45529952)
chr3 (80-233)||(48977387-48977540)
chr3 (80-184)||(16140296-16140399)
chr3 (106-233)||(53233955-53234083)
chr3 (80-163)||(50582991-50583073)
chr3 (80-233)||(7470261-7470413)
chr3 (80-233)||(25289759-25289912)
chr3 (88-233)||(26108299-26108444)
chr3 (80-205)||(30807226-30807351)
chr3 (80-140)||(4252535-4252594)
chr3 (138-233)||(18176932-18177028)
[»] scaffold0425 (2 HSPs)
scaffold0425 (372-444)||(6382-6454)
scaffold0425 (307-368)||(6295-6355)
[»] chr2 (17 HSPs)
chr2 (80-233)||(30466875-30467028)
chr2 (74-201)||(8192428-8192555)
chr2 (106-183)||(19525492-19525569)
chr2 (80-233)||(4567482-4567635)
chr2 (80-183)||(28194229-28194332)
chr2 (80-233)||(17324765-17324917)
chr2 (80-173)||(20297562-20297655)
chr2 (80-233)||(33827618-33827771)
chr2 (106-149)||(38341761-38341804)
chr2 (80-213)||(41329842-41329974)
chr2 (80-233)||(44946098-44946251)
chr2 (192-233)||(9401006-9401047)
chr2 (106-147)||(18708501-18708542)
chr2 (106-183)||(26176293-26176370)
chr2 (80-149)||(32526215-32526283)
chr2 (130-170)||(33605787-33605827)
chr2 (189-233)||(44610147-44610191)
[»] chr1 (15 HSPs)
chr1 (80-233)||(32729544-32729696)
chr1 (80-233)||(8077646-8077799)
chr1 (80-230)||(1138578-1138728)
chr1 (80-233)||(24674392-24674545)
chr1 (80-225)||(7197300-7197444)
chr1 (80-233)||(4621282-4621435)
chr1 (237-309)||(13645843-13645915)
chr1 (138-233)||(18533769-18533865)
chr1 (103-183)||(19034482-19034562)
chr1 (135-233)||(8254797-8254896)
chr1 (80-163)||(24216977-24217059)
chr1 (80-205)||(15059475-15059600)
chr1 (80-202)||(29057414-29057535)
chr1 (80-233)||(30677175-30677328)
chr1 (103-163)||(40810495-40810556)
[»] chr4 (11 HSPs)
chr4 (80-233)||(40058897-40059050)
chr4 (80-233)||(25852213-25852367)
chr4 (80-233)||(19660577-19660730)
chr4 (373-408)||(41068285-41068320)
chr4 (80-233)||(32986196-32986349)
chr4 (80-233)||(34844803-34844956)
chr4 (106-183)||(13017753-13017830)
chr4 (135-233)||(5609247-5609346)
chr4 (81-205)||(25969574-25969700)
chr4 (80-225)||(33696332-33696477)
chr4 (79-159)||(9646336-9646415)
[»] chr8 (16 HSPs)
chr8 (80-233)||(3734668-3734821)
chr8 (106-233)||(18128541-18128669)
chr8 (80-233)||(4718648-4718801)
chr8 (143-233)||(24999299-24999390)
chr8 (80-225)||(18532110-18532255)
chr8 (80-233)||(20305911-20306064)
chr8 (80-233)||(21092544-21092697)
chr8 (80-205)||(27746408-27746533)
chr8 (80-233)||(34237700-34237853)
chr8 (80-233)||(39349259-39349412)
chr8 (103-163)||(30774723-30774784)
chr8 (80-168)||(7558054-7558141)
chr8 (80-159)||(5202210-5202288)
chr8 (80-225)||(15259459-15259604)
chr8 (125-153)||(4833779-4833807)
chr8 (80-224)||(26168903-26169046)
[»] chr7 (19 HSPs)
chr7 (80-233)||(7275280-7275433)
chr7 (74-183)||(37056211-37056319)
chr7 (80-160)||(3951109-3951189)
chr7 (75-233)||(2103053-2103211)
chr7 (80-183)||(12211631-12211733)
chr7 (80-233)||(2751274-2751427)
chr7 (80-233)||(7175907-7176060)
chr7 (80-233)||(22119891-22120044)
chr7 (80-233)||(40542955-40543108)
chr7 (80-149)||(21574233-21574301)
chr7 (86-233)||(42913558-42913705)
chr7 (84-163)||(22696327-22696405)
chr7 (76-163)||(28646968-28647054)
chr7 (135-233)||(29861727-29861826)
chr7 (175-233)||(3851855-3851913)
chr7 (80-233)||(10091191-10091344)
chr7 (80-205)||(21217906-21218031)
chr7 (103-152)||(37693689-37693738)
chr7 (128-156)||(47274201-47274229)
[»] chr6 (8 HSPs)
chr6 (81-233)||(11448871-11449023)
chr6 (80-233)||(9208251-9208404)
chr6 (80-233)||(9238974-9239127)
chr6 (80-233)||(15360143-15360296)
chr6 (80-233)||(34147345-34147498)
chr6 (80-233)||(34159961-34160114)
chr6 (103-222)||(17149512-17149632)
chr6 (135-233)||(12390478-12390577)
[»] scaffold0576 (1 HSPs)
scaffold0576 (80-233)||(5127-5280)
[»] chr5 (12 HSPs)
chr5 (80-233)||(19145457-19145609)
chr5 (80-233)||(32059485-32059638)
chr5 (75-223)||(2499233-2499381)
chr5 (80-233)||(15931058-15931210)
chr5 (80-172)||(13038561-13038652)
chr5 (80-233)||(4603776-4603929)
chr5 (80-205)||(11926575-11926700)
chr5 (80-233)||(15641150-15641303)
chr5 (80-205)||(25586931-25587056)
chr5 (80-233)||(27498776-27498929)
chr5 (80-149)||(15485421-15485490)
chr5 (80-172)||(38631068-38631159)
[»] scaffold0160 (1 HSPs)
scaffold0160 (78-162)||(29259-29342)
[»] scaffold0217 (1 HSPs)
scaffold0217 (76-233)||(7354-7511)
[»] scaffold0623 (1 HSPs)
scaffold0623 (80-233)||(1101-1254)
[»] scaffold0366 (2 HSPs)
scaffold0366 (80-233)||(9344-9497)
scaffold0366 (80-213)||(12065-12198)
[»] scaffold0026 (1 HSPs)
scaffold0026 (80-233)||(97411-97564)
[»] scaffold0199 (1 HSPs)
scaffold0199 (80-163)||(8523-8605)
[»] scaffold0070 (1 HSPs)
scaffold0070 (80-233)||(40324-40477)
[»] scaffold0459 (1 HSPs)
scaffold0459 (80-213)||(10758-10891)
[»] scaffold0068 (1 HSPs)
scaffold0068 (175-233)||(41689-41747)
[»] scaffold0004 (1 HSPs)
scaffold0004 (103-163)||(81551-81612)
[»] scaffold0019 (1 HSPs)
scaffold0019 (106-233)||(161833-161961)


Alignment Details
Target: chr3 (Bit Score: 133; Significance: 6e-69; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 230 - 448
Target Start/End: Complemental strand, 8455929 - 8455702
Alignment:
Q  230 ggatcggagaattgtgcattcattacattgaattttccaaaatagattttctcatcattaaactcatcaatcatttctataaatattgtttcatttaatt 329  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||| ||||||||  |||||||||||||||||||||||||    
T  8455929 ggatcggagaattgtgcattgattacattgaattttcaaaaatagattttctcttcattaaactaatcaatca--tctataaatattgtttcatttaatt 8455832  T
Q  330 ttacttgatagaaagaacacatttccattttgcagagg-----------cattatatcatggcagagttggtagctggggcatttcttcagtcttccttt 418  Q
    |||||||| |||||||||| ||||||||||||||||||             |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8455831 ttacttgacagaaagaacatatttccattttgcagagggttttaagacttgttatatcatggcagagttggtagctggggcatttcttcagtcttccttt 8455732  T
Q  419 caagtgatttttgagaagttggcttcggtt 448  Q
    ||| ||||| | |||||||| |||||||||    
T  8455731 caattgattatcgagaagttagcttcggtt 8455702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 315 - 448
Target Start/End: Complemental strand, 8590920 - 8590777
Alignment:
Q  315 ttgtttcatttaattttacttgatagaaagaacacatttccattttgcagaggcatta----------tatcatggcagagttggtagctggggcatttc 404  Q
    |||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||    
T  8590920 ttgtttcatttaattttatttgacagaaagaatacatttccattttgcagaggcattaagactcattatatcatggcagagttggtagctggggcatttc 8590821  T
Q  405 ttcagtcttcctttcaagtgatttttgagaagttggcttcggtt 448  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  8590820 ttcagtcttcctttcaagtgattattgagaagttggcttcggtt 8590777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 369 - 448
Target Start/End: Original strand, 6478884 - 6478963
Alignment:
Q  369 attatatcatggcagagttggtagctggggcatttcttcagtcttcctttcaagtgatttttgagaagttggcttcggtt 448  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  6478884 attatatcatggcagagttggtagctggggcatttcttcagtcttcttttcaagtgatttttgagaagttggcttcggtt 6478963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 371 - 451
Target Start/End: Original strand, 6519066 - 6519146
Alignment:
Q  371 tatatcatggcagagttggtagctggggcatttcttcagtcttcctttcaagtgatttttgagaagttggcttcggttcat 451  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  6519066 tatatcatggcagagttggtagctggggcatttcttcagtcttcctttcaagtgatttttgagaagttggcgtctgttcat 6519146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 371 - 444
Target Start/End: Complemental strand, 6737115 - 6737042
Alignment:
Q  371 tatatcatggcagagttggtagctggggcatttcttcagtcttcctttcaagtgatttttgagaagttggcttc 444  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6737115 tatatcatggcagagttggtagctggggcatttcttcagtcttcctttcaagtgattattgagaagttggcttc 6737042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 371 - 444
Target Start/End: Complemental strand, 6948400 - 6948327
Alignment:
Q  371 tatatcatggcagagttggtagctggggcatttcttcagtcttcctttcaagtgatttttgagaagttggcttc 444  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  6948400 tatatcatggcagagttggtagctggggcatttcttcagtcttcttttcaagtgattattgagaagttggcttc 6948327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 372 - 444
Target Start/End: Original strand, 6553343 - 6553415
Alignment:
Q  372 atatcatggcagagttggtagctggggcatttcttcagtcttcctttcaagtgatttttgagaagttggcttc 444  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6553343 atatcatggcagagttggtagccggggcatttcttcagtcttcctttcaagtgattattgagaagttggcttc 6553415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 28 - 103
Target Start/End: Complemental strand, 8456127 - 8456052
Alignment:
Q  28 aaatattaactagcaattgtcactaataataataaccgaatggataacacctatttggggttggcctagtagttgg 103  Q
    |||||||||||||| | |||||||||||||||||||||||| ||||||||| |||| ||||||||||||| |||||    
T  8456127 aaatattaactagctagtgtcactaataataataaccgaattgataacacccatttagggttggcctagtggttgg 8456052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 80 - 230
Target Start/End: Original strand, 30257623 - 30257773
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggac-aagt 178  Q
    |||||||||||||||||| ||||| || ||||||||| ||| || |||||  || ||||||| |||||||  || || |||||| || ||||||| ||||    
T  30257623 atttggggttggcctagtggttggctt-gggatcttggagtttgctcctccaaaggtctcaggttcgattccctttggtgccaatttcgatggactaagt 30257721  T
Q  179 ccatattgaacttgctctggctttaaatagggcccttgcaagtgggcagtgg 230  Q
    |||||  || |||||||||||||||||| ||||||  |||||||||| ||||    
T  30257722 ccatacagagcttgctctggctttaaatggggcccccgcaagtgggcggtgg 30257773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 80 - 233
Target Start/End: Complemental strand, 8456348 - 8456195
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggac-aagt 178  Q
    |||||||||||||||||| ||||| || ||||||||  ||| || |||||   | ||||||| |||||||  ||||| |||||| || | ||| | ||||    
T  8456348 atttggggttggcctagtggttggctt-gggatcttcgagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagt 8456250  T
Q  179 ccatattgaacttgctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
    |||||  || |||||||||||||||||  ||||||  ||||||||||||||||||    
T  8456249 ccatacagagcttgctctggctttaaacggggcccccgcaagtgggcagtgggat 8456195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 80 - 233
Target Start/End: Original strand, 35492910 - 35493063
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggac-aagt 178  Q
    |||||||||||||||||| ||||| || ||||||||| ||| || |||||   | ||||||| |||||||  ||||| |||||| || | ||| | ||||    
T  35492910 atttggggttggcctagtggttggctt-gggatcttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagt 35493008  T
Q  179 ccatattgaacttgctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
    |||||  || |||||||||||||||||  ||||||  |||||||||| |||||||    
T  35493009 ccatacagagcttgctctggctttaaacggggcccccgcaagtgggcggtgggat 35493063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 80 - 233
Target Start/End: Complemental strand, 45272614 - 45272461
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggac-aagt 178  Q
    |||||||||||||||||| ||||| || ||||||||| ||| || |||||   | ||||||| |||||||  ||||| |||||| || | ||| | ||||    
T  45272614 atttggggttggcctagtcgttggctt-gggatcttggagtttgctcctccagatgtctcagtttcgattccctctggtgccaatttcggtgggctaagt 45272516  T
Q  179 ccatattgaacttgctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
    |||||  || |||||||||||||||||  ||||||  |||||||||| |||||||    
T  45272515 ccatacggagcttgctctggctttaaacggggcccccgcaagtgggcggtgggat 45272461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 106 - 183
Target Start/End: Original strand, 50162067 - 50162144
Alignment:
Q  106 ttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggacaagtccata 183  Q
    |||||||||||||||| | ||||||||| |||||||||||||||  ||||  |||||| |||||||  ||||||||||    
T  50162067 ttgggatcttgaagtgcgctcctctcaaggtctcagattcgattccctctattgccaattttgatgtgcaagtccata 50162144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 82 - 233
Target Start/End: Original strand, 26174114 - 26174265
Alignment:
Q  82 ttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggac-aagtcc 180  Q
    |||| ||||||||||| ||||| || ||||||||| ||| || |||||   | ||||||| |||||||  ||||| |||||| || | |||   ||||||    
T  26174114 ttggagttggcctagtggttggctt-gggatcttggagtttgctcctccagaggtctcaggttcgatttcctctggtgccaatttcggtgggttaagtcc 26174212  T
Q  181 atattgaacttgctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
    |||  || |||||||||||||||||||||||||  |||||||||| |||||||    
T  26174213 atacagagcttgctctggctttaaatagggcccccgcaagtgggcggtgggat 26174265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 236 - 307
Target Start/End: Original strand, 6488670 - 6488741
Alignment:
Q  236 gagaattgtgcattcattacattgaattttccaaaatagattttctcatcattaaactcatcaatcatttct 307  Q
    ||||||| ||||||||||||||| ||  ||  |||||| ||||| || ||||||||||||||||||||||||    
T  6488670 gagaattatgcattcattacattaaaactttaaaaatatattttttcttcattaaactcatcaatcatttct 6488741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 313 - 368
Target Start/End: Original strand, 6553262 - 6553316
Alignment:
Q  313 tattgtttcatttaattttacttgatagaaagaacacatttccattttgcagaggc 368  Q
    |||||||||||| | ||||| |||||||||||||||||||||||| ||||||||||    
T  6553262 tattgtttcattca-ttttatttgatagaaagaacacatttccatcttgcagaggc 6553316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 353
Target Start/End: Complemental strand, 6948477 - 6948439
Alignment:
Q  315 ttgtttcatttaattttacttgatagaaagaacacattt 353  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  6948477 ttgtttcatttaattttacttgacagaaagaacacattt 6948439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 233
Target Start/End: Complemental strand, 34492773 - 34492620
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggac-aagt 178  Q
    |||||||||||||||||| ||||| || ||||||||| ||| || |||||   | ||||||  |||||||  ||||| |||||| || | ||| | ||||    
T  34492773 atttggggttggcctagtggttggctt-gggatcttggagtttgctcctccagaggtctcatgttcgattccctctgctgccaatttcgttgggctaagt 34492675  T
Q  179 ccatattgaacttgctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
    |||||  || |||||||||||||||||  ||||||  |||||||||| |||||||    
T  34492674 ccatacagagcttgctctggctttaaacggggcccccgcaagtgggcggtgggat 34492620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 233
Target Start/End: Complemental strand, 40133647 - 40133494
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggac-aagt 178  Q
    |||||||||||||||||| ||||| || ||||| ||| ||| || |||||  || ||||||| |||||||  ||||| || ||| || | ||| | ||||    
T  40133647 atttggggttggcctagtggttggctt-gggattttggagtttgctcctccaaaggtctcaggttcgattccctctggtgtcaatttcggtgggctaagt 40133549  T
Q  179 ccatattgaacttgctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
    |||||  || |||||||||||||||||  ||||||  |||||||||| |||||||    
T  40133548 ccatacagagcttgctctggctttaaacggggcccccgcaagtgggcggtgggat 40133494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 233
Target Start/End: Complemental strand, 45529952 - 45529799
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggac-aagt 178  Q
    |||||||||||||||||| ||||| || ||||||||| ||| || |||||   | ||||||| |||||||  |||||  ||||| || ||||| | ||||    
T  45529952 atttggggttggcctagtggttggctt-gggatcttggagtttgctcctccagaggtctcaggttcgattccctctggagccaatttcgatgggctaagt 45529854  T
Q  179 ccatattgaacttgctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
    |||||  || |||||||||||||||||  || |||  |||||||||| |||||||    
T  45529853 ccatacagagcttgctctggctttaaacgggccccccgcaagtgggcggtgggat 45529799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 233
Target Start/End: Original strand, 48977387 - 48977540
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggac-aagt 178  Q
    |||||||||||||||||| ||||  || ||||||||| ||| || |||||  || ||||||| |||||||   |||| |||||| || | |||   ||||    
T  48977387 atttggggttggcctagtggttgactt-gggatcttggagtttgctcctccaaaggtctcaggttcgattccttctggtgccaatttcggtgggttaagt 48977485  T
Q  179 ccatattgaacttgctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
    |||||  || |||||||||||||||||  |||||| ||||||||||| |||||||    
T  48977486 ccatacagagcttgctctggctttaaacggggcccctgcaagtgggcggtgggat 48977540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 184
Target Start/End: Original strand, 16140296 - 16140399
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggacaagtc 179  Q
    ||||||||||||||||||  || | |||||||||||| ||  || ||||||||||||||||  ||||||| |||||  || ||| |||| ||| ||||||    
T  16140296 atttggggttggcctagtgattag-tttgggatcttggagcttgctcctctcaaagtctcatgttcgattttctctagtgtcaattttggtgggcaagtc 16140394  T
Q  180 catat 184  Q
    |||||    
T  16140395 catat 16140399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 233
Target Start/End: Complemental strand, 53234083 - 53233955
Alignment:
Q  106 ttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggac-aagtccatattgaacttgctctggctttaa 204  Q
    ||||||||||| ||| || |||||   ||||||||| ||||||| |||||| |||||| || | ||| | |||||||||  || |||||||||||| |||    
T  53234083 ttgggatcttggagtttgctcctccagaagtctcaggttcgattctctctggtgccaatttcggtgggctaagtccatacagagcttgctctggctctaa 53233984  T
Q  205 atagggcccttgcaagtgggcagtgggat 233  Q
    |  ||||||  |||||||||| |||||||    
T  53233983 acggggcccccgcaagtgggcggtgggat 53233955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 163
Target Start/End: Original strand, 50582991 - 50583073
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaa 163  Q
    |||||||||||||||||| ||||| |||||||||||| ||| || |||||| || || |||| |||||||  ||||| ||||||    
T  50582991 atttggggttggcctagtggttgg-tttgggatcttggagtttgctcctcttaaggtttcaggttcgatttcctctgttgccaa 50583073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 233
Target Start/End: Complemental strand, 7470413 - 7470261
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggac-aagt 178  Q
    |||||||||| ||||||| ||||  || | ||||||| ||| || |||||  || ||||||| |||||||  |||| ||||||| || | ||| | ||||    
T  7470413 atttggggtttgcctagtggttgactt-gagatcttggagtttgctcctccaaaggtctcaggttcgattccctctaatgccaatttcggtgggctaagt 7470315  T
Q  179 ccatattgaacttgctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
     ||||  || |||||||||||||||||  ||||||| ||||||||||||||||||    
T  7470314 tcatacagagcttgctctggctttaaacggggccct-gcaagtgggcagtgggat 7470261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 233
Target Start/End: Complemental strand, 25289912 - 25289759
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggac-aagt 178  Q
    |||||||||||| ||||| ||||| || ||||||||| ||| || |||||   | ||||||| |||||||  ||||  |||||| || | ||| | ||||    
T  25289912 atttggggttggtctagtggttggctt-gggatcttggagtttgctcctccagaggtctcaggttcgattccctctagtgccaatttcggtgggctaagt 25289814  T
Q  179 ccatattgaacttgctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
    |||||  || |||||||||||||||||  ||||||  |||||||||| |||||||    
T  25289813 ccatacagagcttgctctggctttaaacggggcccccgcaagtgggcggtgggat 25289759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 233
Target Start/End: Original strand, 26108299 - 26108444
Alignment:
Q  88 ttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggac-aagtccatattg 186  Q
    |||||||||| ||||| || ||||||||| ||| || |||||   | ||||||| |||||||  ||||| |||||| || | ||| | |||||||||  |    
T  26108299 ttggcctagtggttggctt-gggatcttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacag 26108397  T
Q  187 aacttgctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
    | |||||||||||||||||  ||||||  |||||||||| |||||||    
T  26108398 agcttgctctggctttaaacggggcccccgcaagtgggctgtgggat 26108444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 205
Target Start/End: Complemental strand, 30807351 - 30807226
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggac-aagt 178  Q
    |||||||||||||||||| ||| || ||||||||||| ||| || |||||   | ||||||| |||||||  ||||| |||||| || | ||| | ||||    
T  30807351 atttggggttggcctagtggtt-ggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagt 30807253  T
Q  179 ccatattgaacttgctctggctttaaa 205  Q
    |||||  || |||||||||||||||||    
T  30807252 ccatacagagcttgctctggctttaaa 30807226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 140
Target Start/End: Complemental strand, 4252594 - 4252535
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctca 140  Q
    |||||||||||||||||| ||| || ||| ||||||| |||||| ||||||||| ||||||    
T  4252594 atttggggttggcctagtggtt-ggcttgagatcttggagtgtgctcctctcaaggtctca 4252535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 233
Target Start/End: Complemental strand, 18177028 - 18176932
Alignment:
Q  138 tcagattcgattatctctgatgccaaatttgatggac-aagtccatattgaacttgctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
    |||| |||||||  ||||| |||||| || | ||||| |||||||||  || |||||||||||||||||  ||||||  |||||||||| |||||||    
T  18177028 tcaggttcgattccctctggtgccaatttcggtggactaagtccatacagagcttgctctggctttaaacggggcccccgcaagtgggcggtgggat 18176932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 372 - 444
Target Start/End: Original strand, 6382 - 6454
Alignment:
Q  372 atatcatggcagagttggtagctggggcatttcttcagtcttcctttcaagtgatttttgagaagttggcttc 444  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6382 atatcatggcagagttggtagccggggcatttcttcagtcttcctttcaagtgattattgagaagttggcttc 6454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 307 - 368
Target Start/End: Original strand, 6295 - 6355
Alignment:
Q  307 tataaatattgtttcatttaattttacttgatagaaagaacacatttccattttgcagaggc 368  Q
    ||||| |||||||||||| | ||||| |||||||||||||||||||||||| ||||||||||    
T  6295 tataattattgtttcattca-ttttatttgatagaaagaacacatttccatcttgcagaggc 6355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 80 - 233
Target Start/End: Complemental strand, 30467028 - 30466875
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggac-aagt 178  Q
    |||||||||||||||||| ||||| |||||||| ||| ||| |||||||||  | ||||||| ||||||| |||||| |||||| || | ||| | ||||    
T  30467028 atttggggttggcctagtggttgg-tttgggatattggagtttgttcctctagaggtctcaggttcgattctctctgctgccaatttcggtgggctaagt 30466930  T
Q  179 ccatattgaacttgctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
    |||||  || |||||||||||||||||  ||||||  ||||||||||||||||||    
T  30466929 ccatacagagcttgctctggctttaaaccgggcccccgcaagtgggcagtgggat 30466875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 74 - 201
Target Start/End: Complemental strand, 8192555 - 8192428
Alignment:
Q  74 acacctatttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatgga 173  Q
    ||||| |||||||||||||||||| ||||| || ||||||||| |||||| ||||||||| ||||||| |||||||  ||||| ||||||  | | |||     
T  8192555 acacccatttggggttggcctagtggttggctt-gggatcttggagtgtgctcctctcaaggtctcaggttcgattccctctggtgccaatgtcggtggg 8192457  T
Q  174 caagtccatattgaac-ttgctctggctt 201  Q
    ||||||||||| || | ||||||||||||    
T  8192456 caagtccatatagagctttgctctggctt 8192428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 106 - 183
Target Start/End: Complemental strand, 19525569 - 19525492
Alignment:
Q  106 ttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggacaagtccata 183  Q
    |||||||||||||||||||| |||||||  |||||| |||||||  ||||| |||||| |||| ||| ||||||||||    
T  19525569 ttgggatcttgaagtgtgtttctctcaagatctcaggttcgattccctctggtgccaattttggtgggcaagtccata 19525492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 80 - 233
Target Start/End: Complemental strand, 4567635 - 4567482
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctca-aagtctcagattcgattatctctgatgccaaatttgatggac-aag 177  Q
    |||||||||||||||||||||| || ||||||||||||||| || |||| ||| ||||||||| |||||||  ||||| |||||| || | ||| | ||     
T  4567635 atttggggttggcctagtagtt-ggcttgggatcttgaagtttgctcct-tcagaagtctcaggttcgatttcctctggtgccaatttcggtgggctaaa 4567538  T
Q  178 tccatattgaacttgctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
    ||||||  || |||| ||||||||||||  ||||||   ||||||||| |||||||    
T  4567537 tccatacagagcttgttctggctttaaacggggcccccacaagtgggcggtgggat 4567482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 80 - 183
Target Start/End: Complemental strand, 28194332 - 28194229
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggacaagtc 179  Q
    ||||||||||||| ||||  || || ||||||||||| |||||| |||||| || |||| || ||||||| |||||| |||||| || | ||| ||||||    
T  28194332 atttggggttggcgtagtgatttggcttgggatcttggagtgtgctcctcttaaggtcttaggttcgattctctctggtgccaatttcggtgggcaagtc 28194233  T
Q  180 cata 183  Q
    ||||    
T  28194232 cata 28194229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 233
Target Start/End: Original strand, 17324765 - 17324917
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggac-aagt 178  Q
    |||||||||||||||||| ||| ||||||| |||||| ||| || |||||   | ||||||| |||||||  ||||| |||||| || | ||| | ||||    
T  17324765 atttggggttggcctagtggtt-ggtttggtatcttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagt 17324863  T
Q  179 ccatattgaacttgctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
    |||||  || |||||||||||||||||| ||||||   ||||||||| |||||||    
T  17324864 ccatacagagcttgctctggctttaaat-gggcccccacaagtgggcggtgggat 17324917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 173
Target Start/End: Original strand, 20297562 - 20297655
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatctt-gaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatgga 173  Q
    |||||||||||||| ||| ||||| || |||||||| | | |||| ||||||||| ||||||||||||||| | ||||||||||| || ||||||    
T  20297562 atttggggttggcccagtggttggctt-gggatctttggaatgtgctcctctcaaggtctcagattcgattttttctgatgccaacttcgatgga 20297655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 233
Target Start/End: Complemental strand, 33827771 - 33827618
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggac-aagt 178  Q
    |||||||||||||||||| ||||| || ||||||||| ||  || |||||   | ||||||| |||||||  ||||| |||||| || | ||| | ||||    
T  33827771 atttggggttggcctagtggttggctt-gggatcttggagattgctcctccagaggtctcaggttcgattccctctggtgccaatttcgttgggctaagt 33827673  T
Q  179 ccatattgaacttgctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
    |||||  || |||||||||||||||||  || ||| ||||||||||| |||||||    
T  33827672 ccatacagagcttgctctggctttaaacgggacccctgcaagtgggcggtgggat 33827618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 149
Target Start/End: Original strand, 38341761 - 38341804
Alignment:
Q  106 ttgggatcttgaagtgtgttcctctcaaagtctcagattcgatt 149  Q
    ||||||||||||||| || ||||||||| |||||||||||||||    
T  38341761 ttgggatcttgaagtttgctcctctcaaggtctcagattcgatt 38341804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 213
Target Start/End: Original strand, 41329842 - 41329974
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggac-aagt 178  Q
    |||||||||||||||||| ||| | |||||||||||  ||| || |||||  || || ||||||||||||  ||||| |||||| ||||  || | ||||    
T  41329842 atttggggttggcctagtggttag-tttgggatcttagagtttgctcctccaaaggtttcagattcgattccctctggtgccaattttggcgggctaagt 41329940  T
Q  179 ccatattgaacttgctctggctttaaatagggccc 213  Q
    |||||  || |||||||||||||||||| ||||||    
T  41329941 ccataa-gagcttgctctggctttaaatggggccc 41329974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 233
Target Start/End: Complemental strand, 44946251 - 44946098
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggac-aagt 178  Q
    |||||||||||| ||||| ||||| || ||||||||| ||| || |||||   | ||||||| |||||||  || || |||||| || | ||| | ||||    
T  44946251 atttggggttggtctagtggttggctt-gggatcttggagtttgctcctccagaggtctcaggttcgattccctttggtgccaatttcggtgggctaagt 44946153  T
Q  179 ccatattgaacttgctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
    |||||  ||||||||||||||||||||  || |||  |||||||||| |||||||    
T  44946152 ccatacagaacttgctctggctttaaacgggccccccgcaagtgggcggtgggat 44946098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 233
Target Start/End: Complemental strand, 9401047 - 9401006
Alignment:
Q  192 gctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
    |||||||||||||| |||||||  ||||||||||||||||||    
T  9401047 gctctggctttaaacagggcccccgcaagtgggcagtgggat 9401006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 18708501 - 18708542
Alignment:
Q  106 ttgggatcttgaagtgtgttcctctcaaagtctcagattcga 147  Q
    ||||||||||| |||||||||||||||| ||||||| |||||    
T  18708501 ttgggatcttggagtgtgttcctctcaaggtctcaggttcga 18708542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 183
Target Start/End: Complemental strand, 26176370 - 26176293
Alignment:
Q  106 ttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggacaagtccata 183  Q
    |||||| ||||  ||||| ||||||||| ||||||||||||||| || ||| |||||| |||| ||| | ||||||||    
T  26176370 ttgggaccttggggtgtgctcctctcaaggtctcagattcgattctccctggtgccaattttggtggcctagtccata 26176293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 149
Target Start/End: Complemental strand, 32526283 - 32526215
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgatt 149  Q
    |||||| |||||| |||| ||||  |||||||||||||||| || ||||||||| ||||||| |||||||    
T  32526283 atttggagttggcttagtggttga-tttgggatcttgaagtttgctcctctcaaggtctcaggttcgatt 32526215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 170
Target Start/End: Complemental strand, 33605827 - 33605787
Alignment:
Q  130 tcaaagtctcagattcgattatctctgatgccaaatttgat 170  Q
    |||| |||||| |||||||||||||||||||||| ||||||    
T  33605827 tcaaggtctcatattcgattatctctgatgccaattttgat 33605787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 44610147 - 44610191
Alignment:
Q  189 cttgctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
    |||||||| ||||||||| |||||| ||||||||||| |||||||    
T  44610147 cttgctctagctttaaatggggcccctgcaagtgggcggtgggat 44610191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 8e-22; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 80 - 233
Target Start/End: Original strand, 32729544 - 32729696
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggacaagtc 179  Q
    |||||||||||||||||| ||||| || ||||||||  ||| || ||||||||||||||||| |||||||  || || |||||| || | ||| ||||||    
T  32729544 atttggggttggcctagtggttggctt-gggatcttcgagtttgctcctctcaaagtctcaggttcgattccctatggtgccaatttcggtgggcaagtc 32729642  T
Q  180 catattgaacttgctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
    ||||  || |||||||||||||||||| ||| ||  |||||||||| |||||||    
T  32729643 catacagagcttgctctggctttaaatggggtccccgcaagtgggcggtgggat 32729696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 80 - 233
Target Start/End: Original strand, 8077646 - 8077799
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggac-aagt 178  Q
    |||||||||||||||||| ||||| || ||||||||| ||| || |||||   | ||||||| ||||||| |||||| |||||| || | ||| | ||||    
T  8077646 atttggggttggcctagtggttggctt-gggatcttggagtttgctcctccagaggtctcaggttcgattctctctggtgccaatttcggtgggctaagt 8077744  T
Q  179 ccatattgaacttgctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
    |||||  || ||||||||||||||||| |||||||  |||||||||| |||||||    
T  8077745 ccatacagagcttgctctggctttaaacagggcccccgcaagtgggcggtgggat 8077799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 80 - 230
Target Start/End: Original strand, 1138578 - 1138728
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggacaagtc 179  Q
    ||||||||||| |||||| ||||| || | ||||||| |||||| ||||||||| |||| || ||||| | |||||  |||||| || | ||||||||||    
T  1138578 atttggggttgacctagtggttggctt-gagatcttggagtgtgctcctctcaaggtcttaggttcgaatctctctagtgccaatttcggtggacaagtc 1138676  T
Q  180 catattgaac-ttgctctggctttaaatagggcccttgcaagtgggcagtgg 230  Q
    ||||  || | |||||||| |||  || ||||||||||||||||||||||||    
T  1138677 catacagagctttgctctgacttagaacagggcccttgcaagtgggcagtgg 1138728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 80 - 233
Target Start/End: Original strand, 24674392 - 24674545
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggac-aagt 178  Q
    |||||||||||||||||| ||||| || ||||||||| ||| || |||||   | ||||||| |||||||  ||||| |||||| || | ||| | ||||    
T  24674392 atttggggttggcctagtggttggctt-gggatcttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagt 24674490  T
Q  179 ccatattgaacttgctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
    |||||  || |||||||||||||||||  ||||||  |||||||||| |||||||    
T  24674491 ccatacagagcttgctctggctttaaacggggcccccgcaagtgggcggtgggat 24674545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 80 - 225
Target Start/End: Complemental strand, 7197444 - 7197300
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggacaagtc 179  Q
    |||||||||||||||||| ||||| || ||||||||| ||| || |||||   | ||||||| |||||||  |||||||||||| || | |||  |||||    
T  7197444 atttggggttggcctagtggttggctt-gggatcttggagtttgctcctccagaggtctcaggttcgattccctctgatgccaatttcggtgggtaagtc 7197346  T
Q  180 catattgaacttgctctggctttaaatagggcccttgcaagtgggc 225  Q
     |||  || |||||||||||||||||   ||||| |||||||||||    
T  7197345 aatacagaccttgctctggctttaaacgaggcccctgcaagtgggc 7197300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 233
Target Start/End: Complemental strand, 4621435 - 4621282
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggac-aagt 178  Q
    |||||||||||||||||| ||||| || ||||||||| ||| || |||||   | ||||||| |||||||  ||||| |||||| || | ||| | ||||    
T  4621435 atttggggttggcctagtggttggctt-gggatcttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagt 4621337  T
Q  179 ccatattgaacttgctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
    |||||  || |||||||||||||||||  ||| ||  |||||||||| |||||||    
T  4621336 ccatacagagcttgctctggctttaaacggggtccccgcaagtgggcggtgggat 4621282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 237 - 309
Target Start/End: Complemental strand, 13645915 - 13645843
Alignment:
Q  237 agaattgtgcattcattacattgaattttccaaaatagattttctcatcattaaactcatcaatcatttctat 309  Q
    |||||||||||||||||||||||||  ||  ||||| || |||  | ||||||||||||||||| ||||||||    
T  13645915 agaattgtgcattcattacattgaaactttaaaaattgactttgacttcattaaactcatcaattatttctat 13645843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 138 - 233
Target Start/End: Complemental strand, 18533865 - 18533769
Alignment:
Q  138 tcagattcgattatctctgatgccaaatttgatggac-aagtccatattgaacttgctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
    ||||||| |||| |||||  |||||| || ||||||| |||||||||| || |||| |||| |||||||  |||||| ||||||||||| |||||||    
T  18533865 tcagatttgattctctctagtgccaatttcgatggactaagtccatatagagcttgttctgactttaaacggggcccctgcaagtgggccgtgggat 18533769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 103 - 183
Target Start/End: Complemental strand, 19034562 - 19034482
Alignment:
Q  103 ggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggacaagtccata 183  Q
    |||||||||||||| ||| ||||||||  || || |||| |||||||||||||| |||||| || | ||| ||||||||||    
T  19034562 ggtttgggatcttggagtttgttcctcaaaaggtttcaggttcgattatctctggtgccaatttcggtgggcaagtccata 19034482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 233
Target Start/End: Complemental strand, 8254896 - 8254797
Alignment:
Q  135 gtctcagattcgattatctctgatgccaaatttgatggac-aagtccatattgaacttgctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
    ||||||| |||||||||||||| || ||| || | ||| | |||| ||||  ||||||||||||||||||||  ||||||  |||||||||| |||||||    
T  8254896 gtctcaggttcgattatctctggtgtcaatttcggtgggctaagttcatacagaacttgctctggctttaaacggggcccccgcaagtgggcggtgggat 8254797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 163
Target Start/End: Original strand, 24216977 - 24217059
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaa 163  Q
    ||||||||||| |||||| ||||  || ||||||||| |||||| ||||||||| ||||||| |||||||| || || ||||||    
T  24216977 atttggggttgacctagtggttgactt-gggatcttggagtgtgctcctctcaaggtctcaggttcgattacctttggtgccaa 24217059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 205
Target Start/End: Complemental strand, 15059600 - 15059475
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggac-aagt 178  Q
    |||||||||||||||||| ||| || |||| |||||| ||| || |||||   | ||||||| ||||||| |||||| |||||| || | ||| | ||||    
T  15059600 atttggggttggcctagtggtt-ggcttggaatcttggagtttgctcctccagaggtctcaggttcgattctctctggtgccaatttcggtgggctaagt 15059502  T
Q  179 ccatattgaacttgctctggctttaaa 205  Q
    |||||  || |||||||||||||||||    
T  15059501 ccatacagagcttgctctggctttaaa 15059475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 202
Target Start/End: Complemental strand, 29057535 - 29057414
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggacaagtc 179  Q
    |||||||||||||||||| ||||| |||||||||||| ||| || | |||  || ||||||| |||||||  ||||  |||||| || |||||  |||||    
T  29057535 atttggggttggcctagtggttgg-tttgggatcttggagtttgctgctccaaaggtctcaggttcgattccctcttgtgccaatttcgatggtaaagtc 29057437  T
Q  180 catattgaacttgctctggcttt 202  Q
     |||  || ||||||||||||||    
T  29057436 tatacagagcttgctctggcttt 29057414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 233
Target Start/End: Original strand, 30677175 - 30677328
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggac-aagt 178  Q
    ||||||||||| |||||| ||||| |||||||||| | ||| || |||||  || ||||||| || ||||  ||||| |||||| || | ||| | ||||    
T  30677175 atttggggttgacctagtggttgg-tttgggatctaggagtttgctcctccaaaggtctcaggtttgattccctctggtgccaatttcggtgggctaagt 30677273  T
Q  179 ccatattgaacttgctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
    |||||  || |||||| ||||||||||| || |||  |||||||||| |||||||    
T  30677274 ccatacagagcttgctttggctttaaatgggacccccgcaagtgggcggtgggat 30677328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 163
Target Start/End: Original strand, 40810495 - 40810556
Alignment:
Q  103 ggtttgggatcttgaagtgtgttcctc-tcaaagtctcagattcgattatctctgatgccaa 163  Q
    |||||||||||| | |||||||||||| |||| ||||||| ||||||| |||||| ||||||    
T  40810495 ggtttgggatctgggagtgtgttcctcttcaaggtctcaggttcgattctctctggtgccaa 40810556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 80 - 233
Target Start/End: Complemental strand, 40059050 - 40058897
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggac-aagt 178  Q
    |||||||||||||||||| ||||| || ||||||||| ||| || ||||||  | ||||||| ||||||| |||||| |||||| || | ||| | ||||    
T  40059050 atttggggttggcctagtggttggctt-gggatcttggagtttgctcctctagaggtctcaggttcgattctctctggtgccaatttcggtgggctaagt 40058952  T
Q  179 ccatattgaacttgctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
    |||||  || |||||||||||||||||  ||||||  |||||||||| |||||||    
T  40058951 ccatacagagcttgctctggctttaaacggggcccccgcaagtgggcggtgggat 40058897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 80 - 233
Target Start/End: Original strand, 25852213 - 25852367
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggac-aagt 178  Q
    |||||||||||||||||| ||| || ||||||||||| ||| || |||||  || ||||||| |||||||  ||||| |||||| || | ||| | ||||    
T  25852213 atttggggttggcctagtggtt-ggcttgggatcttggagtttgctcctccaaaggtctcaggttcgattccctctggtgccaatttcggtgggctaagt 25852311  T
Q  179 ccatattgaacttgctctggctttaaataggg-cccttgcaagtgggcagtgggat 233  Q
    |||||  || |||||||||||||||||  ||| |||| ||||||||||| ||||||    
T  25852312 ccatacagagcttgctctggctttaaaacgggaccctcgcaagtgggcaatgggat 25852367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 80 - 233
Target Start/End: Complemental strand, 19660730 - 19660577
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatgg-acaagt 178  Q
    |||||| ||||||||||| ||||| || ||||||||| ||| || |||||   | ||||||| || |||| |||||||||| || || | ||| | ||||    
T  19660730 atttggagttggcctagtggttggctt-gggatcttggagtttgctcctccagaggtctcaggtttgattctctctgatgcaaatttcggtgggataagt 19660632  T
Q  179 ccatattgaacttgctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
    |||||  || ||||||||||||||||| |||||||  |||||||||| |||||||    
T  19660631 ccatacagagcttgctctggctttaaacagggcccccgcaagtgggcggtgggat 19660577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 373 - 408
Target Start/End: Original strand, 41068285 - 41068320
Alignment:
Q  373 tatcatggcagagttggtagctggggcatttcttca 408  Q
    ||||||||||||||||||||||||||||||||||||    
T  41068285 tatcatggcagagttggtagctggggcatttcttca 41068320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 233
Target Start/End: Original strand, 32986196 - 32986349
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggac-aagt 178  Q
    |||||||||||||||||| ||| || ||||||||||| ||| || |||||   | ||||||| ||| |||  ||||| |||||| || | ||| | ||||    
T  32986196 atttggggttggcctagtggtt-ggcttgggatcttggagtttgctcctccagaggtctcaggttcaattccctctggtgccaatttcggtgggctaagt 32986294  T
Q  179 ccatattgaacttgctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
    |||||  || ||||||||| |||||||| ||||||  |||||||||| |||||||    
T  32986295 ccatacagagcttgctctgactttaaatggggcccccgcaagtgggcggtgggat 32986349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 233
Target Start/End: Complemental strand, 34844956 - 34844803
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggac-aagt 178  Q
    |||||||||||||||||| ||| | || | ||||||| ||| || |||||   | ||||||| ||||||| |||||| |||||| || | ||| | ||||    
T  34844956 atttggggttggcctagtggtttgctt-gagatcttggagtttgctcctccagaggtctcaggttcgattctctctggtgccaatttcggtgggctaagt 34844858  T
Q  179 ccatattgaacttgctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
    |||||  || |||||||||||||||||  ||||||  |||||||||| |||||||    
T  34844857 ccatacagagcttgctctggctttaaacggggcccccgcaagtgggcggtgggat 34844803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 106 - 183
Target Start/End: Original strand, 13017753 - 13017830
Alignment:
Q  106 ttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggacaagtccata 183  Q
    |||| ||||||||||||||||||||||| ||||||| ||| |||  ||||| |||||| |||| ||| ||||| ||||    
T  13017753 ttggaatcttgaagtgtgttcctctcaaggtctcaggttccattccctctgttgccaattttggtgggcaagttcata 13017830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 233
Target Start/End: Complemental strand, 5609346 - 5609247
Alignment:
Q  135 gtctcagattcgattatctctgatgccaaatttgatggac-aagtccatattgaacttgctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
    ||||||| ||||||| |||||| |||||| || | ||| | |||||||||  || |||||||||||||||||| ||||||  |||||||| | |||||||    
T  5609346 gtctcaggttcgattctctctggtgccaatttcggtgggctaagtccatacagagcttgctctggctttaaatggggcccccgcaagtggacggtgggat 5609247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 205
Target Start/End: Complemental strand, 25969700 - 25969574
Alignment:
Q  81 tttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcaga--ttcgattatctctgatgccaaatttgatggacaagt 178  Q
    ||||||||||||||| | ||||  || ||||||||| ||| || ||||||||| ||| ||||  || ||||  | ||| |||||| || | ||| |||||    
T  25969700 tttggggttggcctactggttgatttggggatcttggagtttgctcctctcaaggtcccagaggttggattccccctggtgccaatttcggtggccaagt 25969601  T
Q  179 ccatattgaacttgctctggctttaaa 205  Q
    |||||  ||||||||||||||||||||    
T  25969600 ccatacagaacttgctctggctttaaa 25969574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 225
Target Start/End: Complemental strand, 33696477 - 33696332
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggac-aagt 178  Q
    |||| ||||||||||||| ||||| || ||||||||| ||| || |||||   | ||||||| ||| |||  ||||| |||||| || | ||| | ||||    
T  33696477 atttagggttggcctagtggttggctt-gggatcttggagtttgctcctccagaggtctcaggttcaattccctctggtgccaatttcggtgggctaagt 33696379  T
Q  179 ccatattgaacttgctctggctttaaatagggcccttgcaagtgggc 225  Q
    |||||  || |||||||||||||||||| ||||||  ||||||||||    
T  33696378 ccatacagagcttgctctggctttaaatggggcccccgcaagtgggc 33696332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 159
Target Start/End: Complemental strand, 9646415 - 9646336
Alignment:
Q  79 tatttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatg 159  Q
    ||||||||||||| ||||| ||||| |||||||||||  |||||| |||| |||| ||||||  || |||| |||||||||    
T  9646415 tatttggggttggtctagtggttgg-tttgggatctttgagtgtgctcctgtcaaggtctcatgtttgattctctctgatg 9646336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 80 - 233
Target Start/End: Complemental strand, 3734821 - 3734668
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggac-aagt 178  Q
    |||||||||||||||||| ||||| || ||||||||| ||| || |||||  || ||||||| |||||||  ||||| |||||| || | ||| | ||||    
T  3734821 atttggggttggcctagtggttggctt-gggatcttggagtttgctcctccaaaggtctcaggttcgattccctctggtgccaatttcggtgggctaagt 3734723  T
Q  179 ccatattgaacttgctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
    |||||  || |||||||||||||||||  ||||||  |||| |||||||||||||    
T  3734722 ccatacagagcttgctctggctttaaacggggcccccgcaaatgggcagtgggat 3734668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 106 - 233
Target Start/End: Original strand, 18128541 - 18128669
Alignment:
Q  106 ttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggacaagtccatattgaac-ttgctctggctttaa 204  Q
    |||||||||||||||||| |||| |||| |||| |||||||||| |||||| |||||| || | ||| | | ||||||  || | |||||||||||||||    
T  18128541 ttgggatcttgaagtgtgctcctttcaaggtcttagattcgattctctctggtgccaatttcggtgggcgaatccataaagagctttgctctggctttaa 18128640  T
Q  205 atagggcccttgcaagtgggcagtgggat 233  Q
    |  ||||||  |||||||||| |||||||    
T  18128641 acggggcccccgcaagtgggcggtgggat 18128669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 80 - 233
Target Start/End: Original strand, 4718648 - 4718801
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaag-tctcagattcgattatctctgatgccaaatttgatggac-aag 177  Q
    |||||||||||||||||| ||||| || ||||||||| ||| || |||| ||| || |||||| |||||||  ||||| |||||| || | ||| | |||    
T  4718648 atttggggttggcctagtggttggctt-gggatcttggagtttgctcct-tcagaggtctcaggttcgattccctctggtgccaatttcggtgggctaag 4718745  T
Q  178 tccatattgaacttgctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
    ||||||  || |||||||||||||||||  ||||||  |||||||||| |||||||    
T  4718746 tccatacagagcttgctctggctttaaacggggcccccgcaagtgggcggtgggat 4718801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 143 - 233
Target Start/End: Original strand, 24999299 - 24999390
Alignment:
Q  143 ttcgattatctctgatgccaaatttgatggac-aagtccatattgaacttgctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
    |||||||  |||||||||||| |||||||| | |||| ||||| || |||||||||||||||||  ||||||  |||||||||| |||||||    
T  24999299 ttcgattccctctgatgccaattttgatgggctaagttcatatagagcttgctctggctttaaacggggcccccgcaagtgggcggtgggat 24999390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 225
Target Start/End: Original strand, 18532110 - 18532255
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggac-aagt 178  Q
    |||||||||||||||||| ||||| || ||||||||| ||| || |||||   | ||||||| |||||||  ||| |||| ||| || | ||| | ||||    
T  18532110 atttggggttggcctagtggttggctt-gggatcttggagtttgctcctccagaggtctcaggttcgattccctcagatgtcaatttcggtgggctaagt 18532208  T
Q  179 ccatattgaacttgctctggctttaaatagggcccttgcaagtgggc 225  Q
    |||||  ||||||||||||| ||||||  |||||| |||||||||||    
T  18532209 ccatacagaacttgctctggatttaaacggggcccctgcaagtgggc 18532255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 233
Target Start/End: Original strand, 20305911 - 20306064
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggac-aagt 178  Q
    |||||||||||||||||| ||||| || ||||||||  ||| || |||||  || ||||||| |||||||   |||| |||||| || ||||| | ||||    
T  20305911 atttggggttggcctagtggttggctt-gggatcttagagtttgctcctccaaaggtctcagtttcgattccttctggtgccaatttcgatgggctaagt 20306009  T
Q  179 ccatattgaacttgctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
    |||||  || |||||||||||||||||  || |||  |||||||||| |||||||    
T  20306010 ccatacagagcttgctctggctttaaacgggacccccgcaagtgggcggtgggat 20306064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 233
Target Start/End: Original strand, 21092544 - 21092697
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggac-aagt 178  Q
    |||||||||||||||||| ||||| || ||||||||  ||| || |||||  || ||||||| |||||||   |||| |||||| || ||||| | ||||    
T  21092544 atttggggttggcctagtggttggctt-gggatcttagagtttgctcctccaaaggtctcagtttcgattccttctggtgccaatttcgatgggctaagt 21092642  T
Q  179 ccatattgaacttgctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
    |||||  || |||||||||||||||||  || |||  |||||||||| |||||||    
T  21092643 ccatacagagcttgctctggctttaaacgggacccccgcaagtgggcggtgggat 21092697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 205
Target Start/End: Complemental strand, 27746533 - 27746408
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggac-aagt 178  Q
    |||||||||||||||||| ||| |||||||||||||| ||| || |||||  || ||||||| |||||||  || || |||||| || | ||| | ||||    
T  27746533 atttggggttggcctagtggtt-ggtttgggatcttggagtttgctcctccaaaggtctcaggttcgattccctttggtgccaatttcggtgggctaagt 27746435  T
Q  179 ccatattgaacttgctctggctttaaa 205  Q
    |||||  || |||||||||||||||||    
T  27746434 ccatacagagcttgctctggctttaaa 27746408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 233
Target Start/End: Complemental strand, 34237853 - 34237700
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggac-aagt 178  Q
    |||||||||||||||||| ||||| || ||||||||| ||| || |||||   | ||||||| |||||||  ||||| |||||| || | ||| | ||||    
T  34237853 atttggggttggcctagtggttggctt-gggatcttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagt 34237755  T
Q  179 ccatattgaacttgctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
    |||||  || |||||||||||||||||  ||||||  ||||||| || |||||||    
T  34237754 ccatacagagcttgctctggctttaaacggggcccccgcaagtgagcggtgggat 34237700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 233
Target Start/End: Original strand, 39349259 - 39349412
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggac-aagt 178  Q
    |||||||||||||| ||| ||||| || ||||||||| ||| || |||||   | ||||||| |||||||  ||||| |||||| || | ||| | ||||    
T  39349259 atttggggttggcccagtggttggctt-gggatcttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagt 39349357  T
Q  179 ccatattgaacttgctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
    |||||  || |||||||||||||||||  ||||||  |||||||||| |||||||    
T  39349358 ccatacagagcttgctctggctttaaacggggcccccgcaagtgggcggtgggat 39349412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 103 - 163
Target Start/End: Complemental strand, 30774784 - 30774723
Alignment:
Q  103 ggtttgggatcttgaagtgtgttcct-ctcaaagtctcagattcgattatctctgatgccaa 163  Q
    |||||||||||| ||||||||||||| ||| | ||||||||||||||| |||| ||||||||    
T  30774784 ggtttgggatctggaagtgtgttcctcctcgaggtctcagattcgattttctccgatgccaa 30774723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 168
Target Start/End: Complemental strand, 7558141 - 7558054
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttg 168  Q
    |||||||||||||||||||||| | || ||||||||| ||| || |||||   |||||||||||||||||  ||||| |||||| ||||    
T  7558141 atttggggttggcctagtagttagctt-gggatcttggagtttgctcctccagaagtctcagattcgatttcctctggtgccaattttg 7558054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 159
Target Start/End: Complemental strand, 5202288 - 5202210
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatg 159  Q
    |||||||||||| ||| ||||||| |||  ||||||||||| || || |||||||||||||  ||||||| |||||||||    
T  5202288 atttggggttggtctaatagttgg-tttaagatcttgaagtttgctcatctcaaagtctcaagttcgattttctctgatg 5202210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 225
Target Start/End: Complemental strand, 15259604 - 15259459
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggac-aagt 178  Q
    |||||||||||| ||||| ||||| |||||||||||| | | || |||||   | ||||||| |||||||  ||||| |||||| || | ||| | ||||    
T  15259604 atttggggttggtctagtggttgg-tttgggatcttggattttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagt 15259506  T
Q  179 ccatattgaacttgctctggctttaaatagggcccttgcaagtgggc 225  Q
    |||||  || |||||||||||||||||  ||||||  ||||||||||    
T  15259505 ccatacagagcttgctctggctttaaacggggcccccgcaagtgggc 15259459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 153
Target Start/End: Complemental strand, 4833807 - 4833779
Alignment:
Q  125 tcctctcaaagtctcagattcgattatct 153  Q
    |||||||||||||||||||||||||||||    
T  4833807 tcctctcaaagtctcagattcgattatct 4833779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 224
Target Start/End: Complemental strand, 26169046 - 26168903
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggacaagtc 179  Q
    |||| ||||||||||||| ||| | || ||||||||| ||| || ||||||||| ||||||| || ||||    |||||||||| || | ||| |||||     
T  26169046 atttagggttggcctagtggtttgctt-gggatcttggagtttgctcctctcaaggtctcaggtttgattcctcctgatgccaatttcggtgggcaagtt 26168948  T
Q  180 catattgaacttgctctggctttaaatagggcccttgcaagtggg 224  Q
    ||||  || |||| |||||||||||||  | |||| |||||||||    
T  26168947 catacagagcttgttctggctttaaatgagcccctcgcaagtggg 26168903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 80 - 233
Target Start/End: Original strand, 7275280 - 7275433
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggac-aagt 178  Q
    |||||||||||||||||| ||||| || ||||||||| ||| || |||||   | ||||||| |||||||  ||||| |||||| || | ||| | ||||    
T  7275280 atttggggttggcctagtggttggctt-gggatcttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagt 7275378  T
Q  179 ccatattgaacttgctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
    |||||  || ||||||||||||||||| |||||||  |||||||||| |||||||    
T  7275379 ccatacagagcttgctctggctttaaacagggcccccgcaagtgggcggtgggat 7275433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 74 - 183
Target Start/End: Original strand, 37056211 - 37056319
Alignment:
Q  74 acacctatttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatgga 173  Q
    |||||||||||||||||   |||| ||||| |||| ||||||| |||||| ||||||||| || | ||||||||||  ||||| |||||| || ||||||    
T  37056211 acacctatttggggttgatttagtggttgg-tttgtgatcttggagtgtgctcctctcaaggtttgagattcgatttcctctggtgccaatttcgatgga 37056309  T
Q  174 caagtccata 183  Q
    ||||||||||    
T  37056310 caagtccata 37056319  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 80 - 160
Target Start/End: Complemental strand, 3951189 - 3951109
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgc 160  Q
    |||||||||||| ||||| ||||| || ||||||||| |||||| ||||||||||||||| | |||| || ||||||||||    
T  3951189 atttggggttggtctagtggttggcttggggatcttggagtgtgctcctctcaaagtctcgggttcgcttttctctgatgc 3951109  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 75 - 233
Target Start/End: Original strand, 2103053 - 2103211
Alignment:
Q  75 cacctatttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggac 174  Q
    |||| |||||||||||||||||| ||||| || ||||||||| ||| || |||||   | ||||||| |||||||  |||||  ||||| || | ||| |    
T  2103053 cacccatttggggttggcctagtggttggctt-gggatcttggagtttgctcctccagaggtctcaggttcgattccctctggagccaatttcggtgggc 2103151  T
Q  175 -aagtccatattgaacttgctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
     |||||||||  || |||||||||||||||||| ||||||  |||||||||| |||||||    
T  2103152 taagtccatacagagcttgctctggctttaaatggggcccccgcaagtgggcggtgggat 2103211  T

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Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 80 - 183
Target Start/End: Complemental strand, 12211733 - 12211631
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggacaagtc 179  Q
    |||||||||||||||||| ||||| || || |||||| |||||| |||||||||  |||||| || ||||  ||||| |||||| || ||||||||||||    
T  12211733 atttggggttggcctagtggttggcttagg-atcttggagtgtgctcctctcaagatctcaggtttgatttcctctggtgccaatttcgatggacaagtc 12211635  T
Q  180 cata 183  Q
    ||||    
T  12211634 cata 12211631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 80 - 233
Target Start/End: Original strand, 2751274 - 2751427
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggac-aagt 178  Q
    |||||||||||||||||| ||||| || ||||||||| ||| || |||||  || ||||||| |||||||  ||||| |||||| || | ||| | ||||    
T  2751274 atttggggttggcctagtggttggctt-gggatcttggagtttgctcctccaaaggtctcaggttcgattccctctggtgccaatttcggtgggctaagt 2751372  T
Q  179 ccatattgaacttgctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
    |||||  || |||||||||||||||||  ||||||  |||| ||||| |||||||    
T  2751373 ccatacagagcttgctctggctttaaacggggcccccgcaaatgggcggtgggat 2751427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 80 - 233
Target Start/End: Complemental strand, 7176060 - 7175907
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggac-aagt 178  Q
    |||||||||||||||||| ||||| || ||||||||| ||| || |||||   | ||||||| |||||||  ||||| |||||| || | ||| | ||||    
T  7176060 atttggggttggcctagtggttggctt-gggatcttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagt 7175962  T
Q  179 ccatattgaacttgctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
    |||||  || ||||||||||||||||| ||| |||  |||||||||| |||||||    
T  7175961 ccatacagagcttgctctggctttaaacaggacccccgcaagtgggcggtgggat 7175907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 80 - 233
Target Start/End: Original strand, 22119891 - 22120044
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggac-aagt 178  Q
    |||||||||||||||||| ||||| || ||||||||| ||| || |||||   | ||||||| |||||||  ||||| |||||| || | ||| | ||||    
T  22119891 atttggggttggcctagtggttggctt-gggatcttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagt 22119989  T
Q  179 ccatattgaacttgctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
    |||||  || |||||||||||||||||  ||||||  |||||||||| |||||||    
T  22119990 ccatacagagcttgctctggctttaaacggggcccccgcaagtgggcggtgggat 22120044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 80 - 233
Target Start/End: Complemental strand, 40543108 - 40542955
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggac-aagt 178  Q
    |||||||||||||||||| ||||| || ||||||||| ||| || |||||   | ||||||| |||||||  ||||| |||||| || | ||| | ||||    
T  40543108 atttggggttggcctagtggttggctt-gggatcttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagt 40543010  T
Q  179 ccatattgaacttgctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
    |||||  || |||||||||||||||||  ||||||  |||||||||| |||||||    
T  40543009 ccatacagagcttgctctggctttaaacggggcccccgcaagtgggcggtgggat 40542955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 80 - 149
Target Start/End: Complemental strand, 21574301 - 21574233
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgatt 149  Q
    |||||||||||||||||| ||| |||||||||| ||| |||||| ||||||||| ||| ||| |||||||    
T  21574301 atttggggttggcctagtggtt-ggtttgggattttggagtgtgctcctctcaaggtcacaggttcgatt 21574233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 233
Target Start/End: Complemental strand, 42913705 - 42913558
Alignment:
Q  86 ggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatgg-acaagtccatat 184  Q
    |||||||||||| ||||| || ||||||||| ||| || ||||||  | ||||||| |||||||   | || |||||| || ||||| | |||||||||     
T  42913705 ggttggcctagtggttggctt-gggatcttggagtttgctcctctagaggtctcaggttcgatttcatatggtgccaatttcgatgggataagtccatac 42913607  T
Q  185 tgaacttgctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
     ||||||||||||||||||||  ||||||  |||||||| | |||||||    
T  42913606 ggaacttgctctggctttaaacggggcccccgcaagtggacggtgggat 42913558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 163
Target Start/End: Original strand, 22696327 - 22696405
Alignment:
Q  84 ggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaa 163  Q
    |||||||||||||| ||||  |||||||||||| |||||| ||||||||| ||||||| || ||||  ||||| ||||||    
T  22696327 ggggttggcctagtggttga-tttgggatcttggagtgtgctcctctcaaggtctcaggtttgattccctctggtgccaa 22696405  T

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Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 163
Target Start/End: Original strand, 28646968 - 28647054
Alignment:
Q  76 acctatttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaa 163  Q
    |||||||||||||||||||||| | | |  ||||||||||| |||||| | ||||||| ||||||| |||||||  ||||| ||||||    
T  28646968 acctatttggggttggcctagt-gattgacttgggatcttggagtgtgcttctctcaaggtctcaggttcgattccctctggtgccaa 28647054  T

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Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 233
Target Start/End: Original strand, 29861727 - 29861826
Alignment:
Q  135 gtctcagattcgattatctctgatgccaaatttgatggac-aagtccatattgaacttgctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
    ||||||| |||||||  ||||| |||||| || | ||| | |||||||||  ||||||||||||||||||||  ||||||  |||||||||| |||||||    
T  29861727 gtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagaacttgctctggctttaaacggggcccccgcaagtgggcggtgggat 29861826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 233
Target Start/End: Original strand, 3851855 - 3851913
Alignment:
Q  175 aagtccatattgaacttgctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
    |||||||||| || |||||||||||||||||  ||||||  |||||||||| |||||||    
T  3851855 aagtccatatagagcttgctctggctttaaacggggcccccgcaagtgggcggtgggat 3851913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 233
Target Start/End: Original strand, 10091191 - 10091344
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggac-aagt 178  Q
    |||||||||||| ||||| ||||| || ||||||||| ||| || |||||   | ||||||| |||||||  |||||  ||||| || | ||| | ||||    
T  10091191 atttggggttggtctagtggttggctt-gggatcttggagtttgctcctccagaggtctcaggttcgattccctctggagccaatttcggtgggctaagt 10091289  T
Q  179 ccatattgaacttgctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
    |||||  || |||||||||||||||||| ||| ||  |||||||||| |||||||    
T  10091290 ccatacagagcttgctctggctttaaatggggtccccgcaagtgggcggtgggat 10091344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 205
Target Start/End: Complemental strand, 21218031 - 21217906
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggac-aagt 178  Q
    |||||||||||||||||| ||| || ||||||||||| ||| || |||||   | ||||||| |||||||  |||||||||||| || | ||| | ||||    
T  21218031 atttggggttggcctagtggtt-ggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctgatgccaatttcggtgggctaagt 21217933  T
Q  179 ccatattgaacttgctctggctttaaa 205  Q
    |||||  || |||||||| ||||||||    
T  21217932 ccatacagagcttgctctagctttaaa 21217906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 152
Target Start/End: Complemental strand, 37693738 - 37693689
Alignment:
Q  103 ggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatc 152  Q
    |||||||||||||| |||||| |||||| || ||||||| ||||||||||    
T  37693738 ggtttgggatcttggagtgtgctcctcttaatgtctcaggttcgattatc 37693689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 156
Target Start/End: Original strand, 47274201 - 47274229
Alignment:
Q  128 tctcaaagtctcagattcgattatctctg 156  Q
    |||||||||||||||||||||||||||||    
T  47274201 tctcaaagtctcagattcgattatctctg 47274229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 81 - 233
Target Start/End: Original strand, 11448871 - 11449023
Alignment:
Q  81 tttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggac-aagtc 179  Q
    ||||||||||||||||| ||||| || ||||||||| ||| || |||||   | ||||||| ||||||| |||||| |||||| || | ||| | |||||    
T  11448871 tttggggttggcctagtggttggctt-gggatcttggagtttgctcctccagaggtctcaggttcgattctctctggtgccaatttcggtgggctaagtc 11448969  T
Q  180 catattgaacttgctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
    ||||  || |||||||||||||||||  ||||||  |||||||||| |||||||    
T  11448970 catacagagcttgctctggctttaaacggggcccccgcaagtgggcggtgggat 11449023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 80 - 233
Target Start/End: Original strand, 9208251 - 9208404
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggacaagtc 179  Q
    |||||||||||  ||||| ||||| || ||||||||| ||| || ||||||||| ||||||| |||||||  | ||| |||||| || | ||| ||||||    
T  9208251 atttggggttgttctagtggttggatt-gggatcttggagtttgctcctctcaaggtctcaggttcgattccccctggtgccaatttcggtgggcaagtc 9208349  T
Q  180 catattga-acttgctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
    ||||  ||  |||||| ||||||||||| ||||||  |||||||||| |||||||    
T  9208350 catacagagccttgctttggctttaaatggggcccccgcaagtgggcggtgggat 9208404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 80 - 233
Target Start/End: Original strand, 9238974 - 9239127
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggac-aagt 178  Q
    |||||||||||||||||| ||||| || ||||||||| ||| || |||||   | ||||||| |||||||  ||||| |||||| || | |||   ||||    
T  9238974 atttggggttggcctagtggttggctt-gggatcttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggttaagt 9239072  T
Q  179 ccatattgaacttgctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
    |||||| || |||||| ||||||||||| ||||||  |||||||||| |||||||    
T  9239073 ccatatagagcttgctttggctttaaatggggcccccgcaagtgggcggtgggat 9239127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 80 - 233
Target Start/End: Complemental strand, 15360296 - 15360143
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggac-aagt 178  Q
    |||||||||||||||||| ||||| || ||||||||| ||| || |||||  || ||||||| |||||||  ||||| |||||| || | ||| | ||||    
T  15360296 atttggggttggcctagtggttggctt-gggatcttggagtttgctcctccaaaggtctcaggttcgattccctctggtgccaatttcggtgggctaagt 15360198  T
Q  179 ccatattgaacttgctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
    |||||  || |||||||||||||||||  ||||||  |||| ||||| |||||||    
T  15360197 ccatacagagcttgctctggctttaaacggggcccccgcaaatgggcggtgggat 15360143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 233
Target Start/End: Original strand, 34147345 - 34147498
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggac-aagt 178  Q
    |||||||||||||||||| ||||| || ||||||||| ||| || || ||   ||||||||| |||||||  ||||| |||||| || | ||| | ||||    
T  34147345 atttggggttggcctagtggttggctt-gggatcttggagtttgctcttccagaagtctcaggttcgattccctctggtgccaatttcggtgggctaagt 34147443  T
Q  179 ccatattgaacttgctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
    |||||  || |||||||||||||||||  || |||  |||||||||| |||||||    
T  34147444 ccatacagagcttgctctggctttaaacgggccccccgcaagtgggcggtgggat 34147498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 233
Target Start/End: Original strand, 34159961 - 34160114
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggac-aagt 178  Q
    |||||||||||||||||| ||||| || ||||||||| ||| || || ||   ||||||||| |||||||  ||||| |||||| || | ||| | ||||    
T  34159961 atttggggttggcctagtggttggctt-gggatcttggagtttgctcttccagaagtctcaggttcgattccctctggtgccaatttcggtgggctaagt 34160059  T
Q  179 ccatattgaacttgctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
    |||||  || |||||||||||||||||  || |||  |||||||||| |||||||    
T  34160060 ccatacagagcttgctctggctttaaacgggccccccgcaagtgggcggtgggat 34160114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 103 - 222
Target Start/End: Complemental strand, 17149632 - 17149512
Alignment:
Q  103 ggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggacaagtccatattga-acttgctctggctt 201  Q
    |||||||||||||| |||||| ||||||||| ||||||| |||||||  ||||| ||| || || | | | ||||||||||  ||  |||||| ||||||    
T  17149632 ggtttgggatcttggagtgtgctcctctcaaggtctcaggttcgattccctctggtgctaatttcggttggcaagtccatacagagccttgctttggctt 17149533  T
Q  202 taaatagggcccttgcaagtg 222  Q
    ||||| ||||||  |||||||    
T  17149532 taaatggggcccccgcaagtg 17149512  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 233
Target Start/End: Original strand, 12390478 - 12390577
Alignment:
Q  135 gtctcagattcgattatctctgatgccaaatttgatggac-aagtccatattgaacttgctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
    ||||||| |||||||  ||||| |||||| || | ||| | |||||||||  || ||||||||||||||||| |||||||  |||||||||| |||||||    
T  12390478 gtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagcttgctctggctttaaacagggcccccgcaagtgggcggtgggat 12390577  T

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Target: scaffold0576 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 80 - 233
Target Start/End: Complemental strand, 5280 - 5127
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggac-aagt 178  Q
    |||||||||||||||||| ||||| || ||||||||| ||| || |||||  || ||||||| |||||||  ||||| |||||| || | ||| | ||||    
T  5280 atttggggttggcctagtggttggctt-gggatcttggagtttgctcctccaaaggtctcaggttcgattccctctggtgccaatttcggtgggctaagt 5182  T
Q  179 ccatattgaacttgctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
    |||||  || |||||||||||||||||  ||||||  |||| ||||| |||||||    
T  5181 ccatacagagcttgctctggctttaaacggggcccccgcaaatgggcggtgggat 5127  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 80 - 233
Target Start/End: Complemental strand, 19145609 - 19145457
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggacaagtc 179  Q
    |||||||||||||||||| ||||  || ||||||||| ||| || ||||||||| ||||| | |||||||  ||||| |||||| || | ||| ||||||    
T  19145609 atttggggttggcctagtggttgactt-gggatcttggagtatgctcctctcaaggtctccggttcgattccctctggtgccaatttcggtgggcaagtc 19145511  T
Q  180 catattgaac-ttgctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
    ||||  || | ||||||||||||||||| || |||  |||||||||| |||||||    
T  19145510 catacagagctttgctctggctttaaat-ggtcccccgcaagtgggcggtgggat 19145457  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 80 - 233
Target Start/End: Complemental strand, 32059638 - 32059485
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggac-aagt 178  Q
    |||||||||||||||||| ||||| || ||||||||| ||| || |||||  || ||||||| |||||||   |||| |||||| || | ||| | ||||    
T  32059638 atttggggttggcctagtggttggctt-gggatcttggagtttgctcctccaaaggtctcaggttcgattccttctggtgccaatttcggtgggctaagt 32059540  T
Q  179 ccatattgaacttgctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
    |||||  || |||||||||||||||||  ||||||  |||||||||| |||||||    
T  32059539 ccatacagagcttgctctggctttaaacggggcccccgcaagtgggcggtgggat 32059485  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 75 - 223
Target Start/End: Complemental strand, 2499381 - 2499233
Alignment:
Q  75 cacctatttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggac 174  Q
    |||||||||||||||||| |||| | | |  ||||||||||| | | || |||| |||||||||||| ||||||| || ||| || ||| || ||||| |    
T  2499381 cacctatttggggttggcttagtggct-gacttgggatcttggaatttgctcctttcaaagtctcaggttcgattctccctgttgtcaatttcgatgggc 2499283  T
Q  175 aagtccatattga-acttgctctggctttaaatagggcccttgcaagtgg 223  Q
    |||||||||| ||  ||| |||||||||||||| || |||||| ||||||    
T  2499282 aagtccatatagagccttactctggctttaaatgggacccttgaaagtgg 2499233  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 233
Target Start/End: Original strand, 15931058 - 15931210
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtg-ttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggacaagt 178  Q
    |||||||||||||||||| |||  | ||||||||||| ||| || ||| || | ||||||||| |||||||  ||||| |||||| || | |||  ||||    
T  15931058 atttggggttggcctagtggtt-agcttgggatcttggagtttgcttcttcac-aagtctcaggttcgattccctctggtgccaatttcggtggctaagt 15931155  T
Q  179 ccatattgaacttgctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
    |||||  || | ||||||||||||||| ||||| || |||||||||| |||||||    
T  15931156 ccatacagagcctgctctggctttaaacagggctctcgcaagtgggcggtgggat 15931210  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 172
Target Start/End: Complemental strand, 13038652 - 13038561
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatgg 172  Q
    |||||||||||||||||| ||||| |||||||||||| ||| || |||||   | ||||||| |||||||  ||||| |||||| ||||||||    
T  13038652 atttggggttggcctagtggttgg-tttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaattttgatgg 13038561  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 233
Target Start/End: Original strand, 4603776 - 4603929
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaag-tctcagattcgattatctctgatgccaaatttgatggac-aag 177  Q
    |||||||||||||||||| ||||| || ||||||||| ||| || ||||| ||||| |||||  |||||||   |||| |||||| || ||||| | |||    
T  4603776 atttggggttggcctagtggttggctt-gggatcttggagtttgctcctc-caaagatctcaagttcgattccttctggtgccaatttcgatgggctaag 4603873  T
Q  178 tccatattgaacttgctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
    ||||||  || || ||||||||||||||  |||||| ||||||||| | |||||||    
T  4603874 tccatacagagctcgctctggctttaaacggggcccctgcaagtggacggtgggat 4603929  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 205
Target Start/End: Complemental strand, 11926700 - 11926575
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggac-aagt 178  Q
    |||||||||||||||||| ||| |||||||||||||| ||| || |||||   | ||||||| || ||||  ||||| |||||| || | ||| | ||||    
T  11926700 atttggggttggcctagtggtt-ggtttgggatcttggagtttgctcctccagaggtctcaggttagattccctctggtgccaatttcggtgggctaagt 11926602  T
Q  179 ccatattgaacttgctctggctttaaa 205  Q
    |||||  || |||||||||||||||||    
T  11926601 ccatacagagcttgctctggctttaaa 11926575  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 233
Target Start/End: Complemental strand, 15641303 - 15641150
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggac-aagt 178  Q
    |||||||||| ||||||| ||||| || ||||||||| ||| || |||||   | ||||||| |||||||  |||||  ||||| || | ||| | ||||    
T  15641303 atttggggttagcctagtggttggctt-gggatcttggagtttgctcctccagaggtctcaggttcgattccctctggagccaatttcggtgggctaagt 15641205  T
Q  179 ccatattgaacttgctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
    |||||  || |||||||||||||||||  ||||||  |||||||||| |||||||    
T  15641204 ccatacagagcttgctctggctttaaacggggcccccgcaagtgggcggtgggat 15641150  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 205
Target Start/End: Original strand, 25586931 - 25587056
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggac-aagt 178  Q
    |||||||||||||||||| ||| || ||||||||||| ||| || |||||   | ||||||| |||||||  ||||| |||||| || | ||| | ||||    
T  25586931 atttggggttggcctagtggtt-ggcttgggatcttggagtttgctcctccagaggtctcaggttcgatttcctctggtgccaatttcggtgggctaagt 25587029  T
Q  179 ccatattgaacttgctctggctttaaa 205  Q
    |||||  || |||||||||||||||||    
T  25587030 ccatacagagcttgctctggctttaaa 25587056  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 233
Target Start/End: Complemental strand, 27498929 - 27498776
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggac-aagt 178  Q
    ||||||||||| |||||| ||||| || || |||||| ||| || ||||||  | ||||||| |||||||  ||||| |||||| || | ||| | ||||    
T  27498929 atttggggttgacctagtggttggctt-ggaatcttggagtttgctcctctagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagt 27498831  T
Q  179 ccatattgaacttgctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
    |||||   | |||||||||||||||||  ||||||  |||||||||| |||||||    
T  27498830 ccatacatagcttgctctggctttaaacggggcccccgcaagtgggcggtgggat 27498776  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 149
Target Start/End: Complemental strand, 15485490 - 15485421
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgatt 149  Q
    |||||||||||||||||  | | || |||||| |||| |||||| ||||||||| ||||||| |||||||    
T  15485490 atttggggttggcctagcgggttggcttgggaccttggagtgtgctcctctcaaggtctcaggttcgatt 15485421  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 172
Target Start/End: Complemental strand, 38631159 - 38631068
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatgg 172  Q
    |||||||||||||||||| ||| || ||||||||||| ||| || |||||   | |||||||||||||||  ||||| |||||| || |||||    
T  38631159 atttggggttggcctagtggtt-ggcttgggatcttggagtttgctcctccagaggtctcagattcgattccctctggtgccaatttcgatgg 38631068  T

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Target: scaffold0160 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 78 - 162
Target Start/End: Complemental strand, 29342 - 29259
Alignment:
Q  78 ctatttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgcca 162  Q
    ||||||||| |||||||||| ||||| || || ||||||||||||||||||||||| |||| || |||||||  | |||||||||    
T  29342 ctatttgggattggcctagtggttggctt-ggaatcttgaagtgtgttcctctcaaggtcttaggttcgattcccgctgatgcca 29259  T

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Target: scaffold0217 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 76 - 233
Target Start/End: Complemental strand, 7511 - 7354
Alignment:
Q  76 acctatttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaag-tctcagattcgattatctctgatgccaaatttgatggac 174  Q
    |||||||||||||||||||||||||| || ||||||||||| ||| || ||||| || || |||||| |||||||  ||| | |||||| || | ||| |    
T  7511 acctatttggggttggcctagtagtt-ggcttgggatcttggagtttgctcctc-cagagatctcaggttcgattccctccggtgccaatttcggtgggc 7414  T
Q  175 -aagtccatattgaacttgctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
     |||||||||  || ||| |||||||||||||  ||||||  |||||||||| |||||||    
T  7413 taagtccatacagagctttctctggctttaaacggggcccccgcaagtgggcggtgggat 7354  T

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Target: scaffold0623 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0623
Description:

Target: scaffold0623; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 233
Target Start/End: Complemental strand, 1254 - 1101
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggac-aagt 178  Q
    |||||||||||||||||| ||||| || ||||||||| ||| || |||||   | ||||||| |||||||  |||||  ||||| || | ||| | ||||    
T  1254 atttggggttggcctagtggttggctt-gggatcttggagtttgctcctccagaggtctcaggttcgattccctctggagccaatttcggtgggctaagt 1156  T
Q  179 ccatattgaacttgctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
    |||||  || |||||||||||||||||| ||||||  |||||||| | |||||||    
T  1155 ccatacagagcttgctctggctttaaatggggcccccgcaagtggacggtgggat 1101  T

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Target: scaffold0366 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 233
Target Start/End: Complemental strand, 9497 - 9344
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggac-aagt 178  Q
    |||||||||||||||||| ||||| || ||||||||| ||| || |||||   | ||||||| |||||||  |||||  ||||| || | ||| | ||||    
T  9497 atttggggttggcctagtggttggctt-gggatcttggagtttgctcctccagaggtctcaggttcgattccctctggagccaatttcggtgggctaagt 9399  T
Q  179 ccatattgaacttgctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
    |||||  || |||||||||||||||||| ||||||  |||||||| | |||||||    
T  9398 ccatacagagcttgctctggctttaaatggggcccccgcaagtggacggtgggat 9344  T

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Target: scaffold0366; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 213
Target Start/End: Complemental strand, 12198 - 12065
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggac-aagt 178  Q
    |||||||||||||||||| ||||| || ||||||||| ||| || |||||   | ||||||| |||||||  |||||  ||||| || | ||| | ||||    
T  12198 atttggggttggcctagtggttggctt-gggatcttggagtttgctcctccagaggtctcaggttcgatttcctctggagccaatttcggtgggctaagt 12100  T
Q  179 ccatattgaacttgctctggctttaaatagggccc 213  Q
    |||||  || |||||||||||||||||| ||||||    
T  12099 ccatacagagcttgctctggctttaaatggggccc 12065  T

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Target: scaffold0026 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 233
Target Start/End: Complemental strand, 97564 - 97411
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggac-aagt 178  Q
    |||||||||||||||||| ||| || ||||||||||| ||| || |||||  || ||||||| |||||||  ||||| |||||| || | ||| | ||||    
T  97564 atttggggttggcctagtggtt-ggcttgggatcttgtagtttgctcctccaaaggtctcaggttcgattccctctggtgccaatttcggtgggctaagt 97466  T
Q  179 ccatattgaacttgctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
    |||||  || ||||||||| |||||||  || |||  |||||||||| |||||||    
T  97465 ccatacagagcttgctctgactttaaacgggacccccgcaagtgggcggtgggat 97411  T

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Target: scaffold0199 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 163
Target Start/End: Complemental strand, 8605 - 8523
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaa 163  Q
    |||||||||||||||||| ||||| || ||||||||| ||| || |||||   | ||||||| |||||||||||||| ||||||    
T  8605 atttggggttggcctagtggttggctt-gggatcttggagtttgctcctccagaggtctcaggttcgattatctctggtgccaa 8523  T

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Target: scaffold0070 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 233
Target Start/End: Original strand, 40324 - 40477
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaag-tctcagattcgattatctctgatgccaaatttgatggac-aag 177  Q
    |||||||||||||||||| ||||| || || |||||| ||| || |||| ||| || |||||| |||||||  ||||| |||||| || | ||| | |||    
T  40324 atttggggttggcctagtggttggcttagg-atcttggagtttgctcct-tcagaggtctcaggttcgattccctctggtgccaatttcggtgggctaag 40421  T
Q  178 tccatattgaacttgctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
    ||||||  || |||||||||||||||||  ||||||  |||||||||| |||||||    
T  40422 tccatacagagcttgctctggctttaaacggggcccccgcaagtgggcggtgggat 40477  T

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Target: scaffold0459 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 213
Target Start/End: Complemental strand, 10891 - 10758
Alignment:
Q  80 atttggggttggcctagtagttgggtttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggac-aagt 178  Q
    |||||||||||||||||| ||||| || ||||||||| ||| || |||||   | ||||||| |||||||  |||||  ||||| || | ||| | ||||    
T  10891 atttggggttggcctagtggttggctt-gggatcttggagtttgctcctccagaggtctcaggttcgatttcctctggagccaatttcggtgggctaagt 10793  T
Q  179 ccatattgaacttgctctggctttaaatagggccc 213  Q
    |||||  || |||||||||||||||||| ||||||    
T  10792 ccatacagagcttgctctggctttaaatggggccc 10758  T

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Target: scaffold0068 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 233
Target Start/End: Complemental strand, 41747 - 41689
Alignment:
Q  175 aagtccatattgaacttgctctggctttaaatagggcccttgcaagtgggcagtgggat 233  Q
    |||||||||  || |||||||||||||||||  |||||| |||||||||||| ||||||    
T  41747 aagtccatacagagcttgctctggctttaaacggggcccctgcaagtgggcaatgggat 41689  T

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Target: scaffold0004 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 163
Target Start/End: Complemental strand, 81612 - 81551
Alignment:
Q  103 ggtttgggatcttgaagtgtgttcctc-tcaaagtctcagattcgattatctctgatgccaa 163  Q
    ||||||| |||| |||||||| ||||| |||| ||||||||||||||| || ||||||||||    
T  81612 ggtttggaatctggaagtgtgctcctcctcaaggtctcagattcgattctccctgatgccaa 81551  T

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Target: scaffold0019 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 106 - 233
Target Start/End: Original strand, 161833 - 161961
Alignment:
Q  106 ttgggatcttgaagtgtgttcctctcaaagtctcagattcgattatctctgatgccaaatttgatggac-aagtccatattgaacttgctctggctttaa 204  Q
    ||||||||||| ||| || |||||   | ||||||| |||||||  ||||| |||||| || | ||| | |||||||||  || |||||||||||||| |    
T  161833 ttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagcttgctctggctttta 161932  T
Q  205 atagggcccttgcaagtgggcagtgggat 233  Q
    || ||||||  |||||||||| |||||||    
T  161933 atggggcccccgcaagtgggcggtgggat 161961  T

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