View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1099_low_9 (Length: 441)
Name: NF1099_low_9
Description: NF1099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1099_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 129; Significance: 1e-66; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 11 - 176
Target Start/End: Complemental strand, 4150858 - 4150693
Alignment:
| Q |
11 |
cagagagagttgtaatgtatctacagacatttcataacaagagagactaagggaaataaaacaaaaaggccaaatcagaatgnnnnnnngttcttaaaag |
110 |
Q |
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| T |
4150858 |
cagagagagttgtaatgtatctacagacatttcataacaagagagaccaagggaaataaaacaaaaaggccaaatcagaatgaaaaaaagttctgaaaag |
4150759 |
T |
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| Q |
111 |
tttaatgcatatttaccttgtcaagtctatgatctcagcctttgccaagggtgactttttcagcaa |
176 |
Q |
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| T |
4150758 |
tttaatgcatatttaccttgtcaagtctatgatctcagcctttgctaagggtgacttttgcagcaa |
4150693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 11 - 176
Target Start/End: Complemental strand, 4166627 - 4166462
Alignment:
| Q |
11 |
cagagagagttgtaatgtatctacagacatttcataacaagagagactaagggaaataaaacaaaaaggccaaatcagaatgnnnnnnngttcttaaaag |
110 |
Q |
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| T |
4166627 |
cagagagagttgtaatgtatctacagacatttcataacaagagagaccaagggaaataaaacaaaaaggccaaatcagaatgaaaaaaagttctgaaaag |
4166528 |
T |
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| Q |
111 |
tttaatgcatatttaccttgtcaagtctatgatctcagcctttgccaagggtgactttttcagcaa |
176 |
Q |
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| T |
4166527 |
tttaatgcatatttaccttgtcaagtctatgatctcagcctttgctaagggtgacttttgcagcaa |
4166462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 167 - 288
Target Start/End: Complemental strand, 4150645 - 4150524
Alignment:
| Q |
167 |
ttttcagcaatttcaagttttgtaagtaagggaaatcaaccttccataaaccaggaactaagcaaagagtctatacaatgagggagggtgaatcatgatc |
266 |
Q |
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| T |
4150645 |
ttttcagcaatttcaagttttgtaagtaagggaaatcaaccttccataaaccaggaactgagcaaagagtctatgcaacgagggagggtgaatcatgatc |
4150546 |
T |
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| Q |
267 |
aatttaaagcaagtcatgtttt |
288 |
Q |
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| T |
4150545 |
agtttaaggcaagtcatgtttt |
4150524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 167 - 288
Target Start/End: Complemental strand, 4166414 - 4166293
Alignment:
| Q |
167 |
ttttcagcaatttcaagttttgtaagtaagggaaatcaaccttccataaaccaggaactaagcaaagagtctatacaatgagggagggtgaatcatgatc |
266 |
Q |
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| T |
4166414 |
ttttcagcaatttcaagttttgtaagtaagggaaatcaaccttccataaaccaggaactgagcaaagagtctatgcaacgagggagggtgaatcatgatc |
4166315 |
T |
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| Q |
267 |
aatttaaagcaagtcatgtttt |
288 |
Q |
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| T |
4166314 |
agtttaaggcaagtcatgtttt |
4166293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 360 - 412
Target Start/End: Complemental strand, 4150452 - 4150400
Alignment:
| Q |
360 |
ctatgtttttcctaaaccaatagtcactgaagtacctcaagagtagatgaaga |
412 |
Q |
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| T |
4150452 |
ctatgtttttcctaaaccaatagtcactgaagtacctcaagaatagatgaaga |
4150400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 360 - 412
Target Start/End: Complemental strand, 4166221 - 4166169
Alignment:
| Q |
360 |
ctatgtttttcctaaaccaatagtcactgaagtacctcaagagtagatgaaga |
412 |
Q |
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| T |
4166221 |
ctatgtttttcctaaaccaatagtcactgaagtacctcaagaatagatgaaga |
4166169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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