View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11000_high_1 (Length: 542)
Name: NF11000_high_1
Description: NF11000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11000_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 412; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 19 - 534
Target Start/End: Original strand, 18804200 - 18804724
Alignment:
| Q |
19 |
ttgaaaacataggagaagatatcgctaacataatgttgatgtggcagttgaaaacagttgattatgaagttttctatacaa-cattaattatatatataa |
117 |
Q |
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| T |
18804200 |
ttgaaaacataggaggagatatcgctaacataatgatgatgtagtagttgaaaacagttgattatgaagttttctatccaaacattaattatatatataa |
18804299 |
T |
|
| Q |
118 |
ccatcagttcatcctctatgaatataaaaatatgcattctctatgtaagcatactatattttaatgatggaaaaattcaaagttaaatatatttgtgtcc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18804300 |
ccatcagttcatcctctatgaatataaaaatatgcattctcaatgtaagcatactatattttaatgatggaaaaattcaaagttaaatatatttgtgtcc |
18804399 |
T |
|
| Q |
218 |
ctacaaaatatagtcttcaannnnnnncaatggtaaatattaaattaaacctttattttttatcaaaataaatctaagttgtcacttgtcacgctaataa |
317 |
Q |
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| T |
18804400 |
ctacaaaatatagtcttcaa-ttttttcaatggtaaatattaaattaaacctttattttttatcaaaataaatctaagttgtcacttgtcacgctaataa |
18804498 |
T |
|
| Q |
318 |
cttattaatgatgtaaaatagtcattaataataaaattggtttcaagtaaaacaccggttattagaagataagtaaaatttgaccaaaatttttgtcact |
417 |
Q |
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| T |
18804499 |
cttattaatgatgtaaaatagtcattaataataaaattggtttcaagtaaaacaccggttattagaagataagtaaaatttgatcaaaatttttgtcact |
18804598 |
T |
|
| Q |
418 |
caagaccggtattgatgttca---------cttaagactagagagatcacttaaaacaaagatactccgccttaaagatactattcatgtcacattaagc |
508 |
Q |
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| T |
18804599 |
caagactgatattgatgatcaattaagacgcttaagactagagagatcacttaaaacaaagatactccgccttaaagatactattcatgtcacattaagc |
18804698 |
T |
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| Q |
509 |
ctcataagaaccattcatctcactcg |
534 |
Q |
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| T |
18804699 |
ctcataagaaccattcaattcactcg |
18804724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 18783189 - 18783289
Alignment:
| Q |
19 |
ttgaaaacataggagaagatatcgctaacataatgttgatgtggcagttgaaaacagttgattatgaagttttctatacaacattaattatatatataac |
118 |
Q |
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||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18783189 |
ttgaaaacataggaggagatatcgctaacataatgttgatgtagcagttgaaaacagttgattatgaagttttctatacaacattaattatatatataac |
18783288 |
T |
|
| Q |
119 |
c |
119 |
Q |
| |
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| T |
18783289 |
c |
18783289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 150 - 227
Target Start/End: Original strand, 18792801 - 18792878
Alignment:
| Q |
150 |
tgcattctctatgtaagcatactatattttaatgatggaaaaattcaaagttaaatatatttgtgtccctacaaaata |
227 |
Q |
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| T |
18792801 |
tgcatcctctatgtaagcatcctatattttaatgtttgaaaaattaaaagtttaacatatttgtgtccctaccaaata |
18792878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 18792669 - 18792739
Alignment:
| Q |
19 |
ttgaaaacataggagaagatatcgctaacataatgttgatgtggcagttgaaaacagttgattatgaagtt |
89 |
Q |
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||||||||||||||| ||||||||||||||||||||||||| | |||||||| | |||||||| ||||| |
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| T |
18792669 |
ttgaaaacataggaggagatatcgctaacataatgttgatggagttgttgaaaataattgattatcaagtt |
18792739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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