View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11000_high_3 (Length: 335)
Name: NF11000_high_3
Description: NF11000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11000_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 10729231 - 10729549
Alignment:
| Q |
1 |
gactatttactctagttaaaatatcacactttttaaatgtgattctaattacataattctcttgatatggtgcaaatcatgaactgaactttgtataatc |
100 |
Q |
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| T |
10729231 |
gactatttactctagttaaaatatcacactttttaaatgtgattctaattacataattctcttgatatgctgcaaatcatgaactgaactttgtataatc |
10729330 |
T |
|
| Q |
101 |
ataagtattgaattcttcacatgtcgcgtatcgtaaacctgtatttttaccacataccaacgtgaattgagaattactctatgacaatgagtgtgaataa |
200 |
Q |
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| T |
10729331 |
ataagtattgaattcttcacatgtcgcgtatcgcaaacctgtatttttaccacataccaacgtgaattgagaattactctatgacaatgagtgtgaataa |
10729430 |
T |
|
| Q |
201 |
atggagtatgtgttcttaagacacaaattaacaaaaccctagatgtacttagggatttaatttgattttgaaatggcaacgcaacatcttaagaaatttg |
300 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10729431 |
atggggtatgtgttcttaagacacaaattaacaaaaccctagatgtacttagggatttaatttgattttgaaatggcaacgcaacatcttaagaaatttg |
10729530 |
T |
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| Q |
301 |
atttagggacacaaattat |
319 |
Q |
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||||||||||||||||||| |
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| T |
10729531 |
atttagggacacaaattat |
10729549 |
T |
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