View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11000_low_10 (Length: 250)
Name: NF11000_low_10
Description: NF11000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11000_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 3 - 245
Target Start/End: Original strand, 39758473 - 39758715
Alignment:
| Q |
3 |
attcgtactatcattcttttccaatctttcagcttcaatttccaaattactatcatgtgcacggctcgatttcgcgtgtgttctagaatggtttgagtct |
102 |
Q |
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| T |
39758473 |
attcgtactatcattcttttccaatctttcagcttcaatttccaaattaccatcatgtgcacggctcgatttcgcgtgtgttctagaatggtttgagtct |
39758572 |
T |
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| Q |
103 |
aaagcggaggagttgtatctttgcacggcttttccagcattggttcatgacaactctatagttctttccgcggcctcgagttgtcgcaaagtctcattca |
202 |
Q |
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| T |
39758573 |
aaagcggaggagttgtatctttgcacggattttccagcattggttcatgacaactctatagttctttccgcggcctcgagttgtcgcaaagtctcattca |
39758672 |
T |
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| Q |
203 |
ccaaaggtcgagcctgaactgactctttgtgtcctttgcttct |
245 |
Q |
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| T |
39758673 |
ccaaaggtcgagcctgaactgactctttgcgtccgttgattct |
39758715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 68
Target Start/End: Original strand, 39764213 - 39764274
Alignment:
| Q |
7 |
gtactatcattcttttccaatctttcagcttcaatttccaaattactatcatgtgcacggct |
68 |
Q |
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|||||||||||||||||||||||||||| ||| ||||||||||| || ||||||||| |||| |
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| T |
39764213 |
gtactatcattcttttccaatctttcagattccatttccaaatttctgtcatgtgcaaggct |
39764274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 162 - 231
Target Start/End: Original strand, 39764332 - 39764401
Alignment:
| Q |
162 |
agttctttccgcggcctcgagttgtcgcaaagtctcattcaccaaaggtcgagcctgaactgactctttg |
231 |
Q |
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| T |
39764332 |
agttcttttcgctgcctcaagttgtcgcaaagtctcgttcaccaaaggttgagcctgatttgactctttg |
39764401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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