View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11000_low_13 (Length: 238)
Name: NF11000_low_13
Description: NF11000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11000_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 39758477 - 39758255
Alignment:
| Q |
1 |
cgaattacattgaaatcgagtttcattctttgaggtctgaggttgaactacttaggtctgcaattgagattggtgaaactaaattacaggaggaaaagat |
100 |
Q |
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| T |
39758477 |
cgaatcacattgaaatcgagtttcattctttgaggtttgaggttgaactacttaggtctgcaattgagattggtgaaactaaattacaggaggaaaagat |
39758378 |
T |
|
| Q |
101 |
tcagaacacaatgaagataatgaatgcttacgagttgattgaaaggatgaaatcagaatcgaatcagagggaatccgaattggatagaaagaaatccgaa |
200 |
Q |
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| T |
39758377 |
tcagaacacaatgaagataatgaatgcttacgagttgattgaaaggatgaaatcagaatcgaatcagagggaatccgaattggatagaaagaaatccaaa |
39758278 |
T |
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| Q |
201 |
attgaggagttgaaggagaaatt |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
39758277 |
attgaggagttgaaggagaaatt |
39758255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 7 - 221
Target Start/End: Complemental strand, 39764207 - 39763993
Alignment:
| Q |
7 |
acattgaaatcgagtttcattctttgaggtctgaggttgaactacttaggtctgcaattgagattggtgaaactaaattacaggaggaaaagattcagaa |
106 |
Q |
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| T |
39764207 |
acattgaaatcgagtttcgttctttgaggtctgaggttgaactacttaggtctgcgattgagattgccgaaattaaattccaagaagaacagattcagaa |
39764108 |
T |
|
| Q |
107 |
cacaatgaagataatgaatgcttacgagttgattgaaaggatgaaatcagaatcgaatcagagggaatccgaattggatagaaagaaatccgaaattgag |
206 |
Q |
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| T |
39764107 |
cacggtgaagattaggaatgcctatgagttgatcgaacgggtaaaatcagaattgagtcagagggagtccgaattggaaagaaagaaagccgaaattgag |
39764008 |
T |
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| Q |
207 |
gagttgaaggagaaa |
221 |
Q |
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|||||||| |||||| |
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| T |
39764007 |
gagttgaaagagaaa |
39763993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 36927324 - 36927272
Alignment:
| Q |
7 |
acattgaaatcgagtttcattctttgaggtctgaggttgaactacttaggtct |
59 |
Q |
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||||| |||||||||||| |||||||| ||| ||| |||||||||| |||||| |
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| T |
36927324 |
acatttaaatcgagtttcgttctttgaagtccgagtttgaactactgaggtct |
36927272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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