View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11000_low_16 (Length: 211)
Name: NF11000_low_16
Description: NF11000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11000_low_16 |
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| [»] chr8 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr2 (5 HSPs) |
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| [»] scaffold0179 (1 HSPs) |
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| [»] scaffold0010 (1 HSPs) |
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| [»] scaffold0894 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 11 - 211
Target Start/End: Original strand, 3300432 - 3300631
Alignment:
| Q |
11 |
ggacatcaacaaaccttaaagcagcgttataccagattatgtgcatgaggatcatgatatctatttaattgctatctgaaatctgatttttaactggaaa |
110 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
3300432 |
ggacatcaacaaaccgtaaagcagcgttataccagattatgtgcatgaggat-atgacatatatttaattgctatctgaaatctgatttttaactggaaa |
3300530 |
T |
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| Q |
111 |
ccttcttactggatcggtgcctgcttggaaaaagaacattgacgtgtaagttattgttctaatactacttgtatgattactttgatcgaacaaagtactt |
210 |
Q |
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|||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||| |
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| T |
3300531 |
ccttcttactggatcggtacctgcttggaaaaagaacatcgacgtgtaagttcttgttctaatattacttgtataattactttgatcgaacaaagtactt |
3300630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 11 - 81
Target Start/End: Original strand, 36598684 - 36598754
Alignment:
| Q |
11 |
ggacatcaacaaaccttaaagcagcgttataccagattatgtgcatgaggatcatgatatctatttaattg |
81 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
36598684 |
ggacatcaacaaaccgtaaagcagcgttataccagattatgtgcatgaggatcatgatatatatttaattg |
36598754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 11 - 211
Target Start/End: Original strand, 38837098 - 38837293
Alignment:
| Q |
11 |
ggacatcaacaaaccttaaagcagcgttataccagattatgtgcatgaggatcatgatatctatttaattgctatctgaaatctgatttttaactggaaa |
110 |
Q |
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| T |
38837098 |
ggacatcaacaaaccataaagcagcgttataccaaattatgtacatgaggatcatgatatat-----attgctatctgaaatctgatttttaactggaaa |
38837192 |
T |
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| Q |
111 |
ccttcttactggatcggtgcctgcttggaaaaagaacattgacgtgtaagttattgttctaatactacttgtatgattactttgatcgaacaaagtactt |
210 |
Q |
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| T |
38837193 |
ccttcttactggatcggtacctgcttggaaaaagaacatcgacgtgtaagttcttgttctaatattacttatataattactttgatcgaacaaagtactt |
38837292 |
T |
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Target: chr2 (Bit Score: 109; Significance: 5e-55; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 95 - 211
Target Start/End: Complemental strand, 31255198 - 31255082
Alignment:
| Q |
95 |
gatttttaactggaaaccttcttactggatcggtgcctgcttggaaaaagaacattgacgtgtaagttattgttctaatactacttgtatgattactttg |
194 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31255198 |
gatttttaactggaaaccttctcactggatcggtgcctgcttggaaaaagaacatcgacgtgtaagttattgttctaatactacttgtatgattactttg |
31255099 |
T |
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| Q |
195 |
atcgaacaaagtacttc |
211 |
Q |
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| T |
31255098 |
atcgaacaaagtacttc |
31255082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 95 - 177
Target Start/End: Complemental strand, 31292181 - 31292099
Alignment:
| Q |
95 |
gatttttaactggaaaccttcttactggatcggtgcctgcttggaaaaagaacattgacgtgtaagttattgttctaatacta |
177 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| |
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| T |
31292181 |
gatttttaactggaaaccttctcactggatcggtgcctgcttggaaaaagaacgttgacgtgtaagttatttttctactacta |
31292099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 81
Target Start/End: Complemental strand, 7313410 - 7313340
Alignment:
| Q |
11 |
ggacatcaacaaaccttaaagcagcgttataccagattatgtgcatgaggatcatgatatctatttaattg |
81 |
Q |
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||||||||||||||| |||||||| |||||||||| |||||||||| |||||||| |||| |||| ||||| |
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| T |
7313410 |
ggacatcaacaaaccgtaaagcagtgttataccaggttatgtgcataaggatcataatatatattcaattg |
7313340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 188
Target Start/End: Original strand, 31419470 - 31419563
Alignment:
| Q |
95 |
gatttttaactggaaaccttcttactggatcggtgcctgcttggaaaaagaacattgacgtgtaagttattgttctaatactacttgtatgatt |
188 |
Q |
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|||||||||| ||||||||||| |||||| | |||||| |||||| ||||||| | ||||| |||||| ||||||||||||| | |||||| |
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| T |
31419470 |
gatttttaaccggaaaccttctgactggaccagtgccttcttggagaaagaacgtgagcgtgtgagttatctttctaatactactagcatgatt |
31419563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 95 - 188
Target Start/End: Complemental strand, 31374355 - 31374262
Alignment:
| Q |
95 |
gatttttaactggaaaccttcttactggatcggtgcctgcttggaaaaagaacattgacgtgtaagttattgttctaatactacttgtatgatt |
188 |
Q |
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||||||||||||||||| || |||||| ||||||| | |||| |||||||||| |||||||||||| ||| ||||||| || ||||||| |
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| T |
31374355 |
gatttttaactggaaacaacctcactggactggtgccttcatggagaaagaacatttacgtgtaagttacctttcaaatactaattatatgatt |
31374262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0179 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: scaffold0179
Description:
Target: scaffold0179; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 11 - 81
Target Start/End: Original strand, 25170 - 25240
Alignment:
| Q |
11 |
ggacatcaacaaaccttaaagcagcgttataccagattatgtgcatgaggatcatgatatctatttaattg |
81 |
Q |
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||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
25170 |
ggacatcaacaaaccgtaaagcagcgttatactagattatgtgcatgaggatcatgatatatatttaattg |
25240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 8650722 - 8650786
Alignment:
| Q |
11 |
ggacatcaacaaaccttaaagcagcgttataccagattatgtgcatgaggatcatgatatctatt |
75 |
Q |
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||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
8650722 |
ggacatcaacaaaccgtaaagcagcgttgtaccagattatgtgcatgaggatcatgatatatatt |
8650786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 81
Target Start/End: Original strand, 246684 - 246754
Alignment:
| Q |
11 |
ggacatcaacaaaccttaaagcagcgttataccagattatgtgcatgaggatcatgatatctatttaattg |
81 |
Q |
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||||||||||||||| |||||||||||||||||||||||| ||||| |||||||| |||| |||||||||| |
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| T |
246684 |
ggacatcaacaaaccataaagcagcgttataccagattatatgcataaggatcataatatatatttaattg |
246754 |
T |
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Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 81
Target Start/End: Complemental strand, 37281514 - 37281444
Alignment:
| Q |
11 |
ggacatcaacaaaccttaaagcagcgttataccagattatgtgcatgaggatcatgatatctatttaattg |
81 |
Q |
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||||||||||||||| |||||||||||||||||||||||| ||||| |||||||| |||| |||||||||| |
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| T |
37281514 |
ggacatcaacaaaccataaagcagcgttataccagattatatgcataaggatcataatatatatttaattg |
37281444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0894 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0894
Description:
Target: scaffold0894; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 692 - 751
Alignment:
| Q |
11 |
ggacatcaacaaaccttaaagcagcgttataccagattatgtgcatgaggatcatgatat |
70 |
Q |
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||||||||||||||| |||||||||||||||||| ||||||||||| |||||||| |||| |
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| T |
692 |
ggacatcaacaaaccgtaaagcagcgttataccaaattatgtgcataaggatcataatat |
751 |
T |
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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 11135929 - 11135870
Alignment:
| Q |
11 |
ggacatcaacaaaccttaaagcagcgttataccagattatgtgcatgaggatcatgatat |
70 |
Q |
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||||||||||||||| ||| | ||||||||||||||||||| |||| |||||||| |||| |
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| T |
11135929 |
ggacatcaacaaaccgtaacgtagcgttataccagattatgcgcataaggatcataatat |
11135870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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