View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11000_low_2 (Length: 447)
Name: NF11000_low_2
Description: NF11000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11000_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 7 - 433
Target Start/End: Original strand, 37341109 - 37341536
Alignment:
| Q |
7 |
tgagatgaactatatggatctgggttatgtgcaattacaatcccgtgaccacacgcaatcaaccatatctgaactgtccgatcttgattggacagtcaag |
106 |
Q |
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| T |
37341109 |
tgagctgaactatatggatctgggttatgtgcaattacaatcccgtgaccacacgcaatcaatcatatctgaactgtccgatcttgattggacagtcaag |
37341208 |
T |
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| Q |
107 |
atgtgaccgactacatgcaattacatggcgcacaatccaaaccatattggggtgtactgtgtacacttatttatggaaagacaatataatcatgatttat |
206 |
Q |
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| T |
37341209 |
atgtgaccgactacatgcaattacatggcgcacaatccaaaccatattggggtgtactgtgtacacttatttatggaaagacaatataatcatgatttat |
37341308 |
T |
|
| Q |
207 |
gtaattttgtatcacagaacattctcaatgctatcaaaatggtgataaaatgtgtactataccagaaattattggtctacaaatttgatttagtttctaa |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
37341309 |
gtaattttgtatcacagaacattctcaatgctatcaaaatggtgataaaatgtgtactataccagaaattattggtctaaaaatttgatttagtttctaa |
37341408 |
T |
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| Q |
307 |
ctcaagtactgttgtcccacatatgctcc-aagtcgtgactgatggtctacatggaatagaactgacaaagaggtagctgatgatgaaactaaatcattc |
405 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37341409 |
ctcaagtactgttgtcccacatatgctccaaagtcgtgactgatggtctacatggaatagaactgacaaagaggtagctgatgatgaaactaaatcattc |
37341508 |
T |
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| Q |
406 |
atagattcatatatcatccatttcttta |
433 |
Q |
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| T |
37341509 |
atagattcatatatcatccatttcttta |
37341536 |
T |
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