View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11000_low_5 (Length: 324)
Name: NF11000_low_5
Description: NF11000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11000_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 6 - 308
Target Start/End: Original strand, 49870 - 50170
Alignment:
| Q |
6 |
agcagagagatgttgttgaggtggccttagttttgtcctctttttgtcctttgtacgaaatgcaagactatgaacattatctatcatgcaagatatacgt |
105 |
Q |
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| T |
49870 |
agcagtgagatgttgttgaggtggccttagttttgtcctctttttgtcctctgtacgaaatgcaagactatgaacattatctatcatgcaagatatacgt |
49969 |
T |
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| Q |
106 |
gggctcctcctttctccctccaccttttgcaatttcctgccacacaaatcaaattttatgaaaatatgtagtactcttttaaaattaaaattgaactcta |
205 |
Q |
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| T |
49970 |
gggctcctcctttctccctccaccttttgcaatttcctaccacacaaatcaaattttatgaaaatatgtagtactc-tttaaaattaaaattgaactcta |
50068 |
T |
|
| Q |
206 |
actaaaacccacctcaacctggtcattgtacatcggcatgttagaaaatggatcaatgnnnnnnnnaaatgtatggaacaagacttttgaaaaggtaaga |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
50069 |
actaaaacccacctcaacctggtcattgtacatcggcatgttagaaaatggatcaatg-tttttttaaatgtatggaacaagacttttgaaaaggtaaga |
50167 |
T |
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| Q |
306 |
tac |
308 |
Q |
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| T |
50168 |
tac |
50170 |
T |
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