View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11001_high_10 (Length: 333)
Name: NF11001_high_10
Description: NF11001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11001_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 43 - 304
Target Start/End: Original strand, 10239281 - 10239542
Alignment:
| Q |
43 |
acctgtgtcggagtcaattttaggatgcgccgtcatattcatgaagagtttgccgttaaaatcataacggccgattgtttggatatcaccgttgggtgta |
142 |
Q |
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| T |
10239281 |
acctgtgtcggagtcaattttaggatgcgccgtcatattcatgaagagtttgccgttaaaatcataacggcctattgtttggatatcaccgtttggtgta |
10239380 |
T |
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| Q |
143 |
actttgatttcataaggaagatctgattctcctaaagcaaaaagacggttgccaaacagagccaaacttgtgttgatcaatccaatgccgttaattggat |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10239381 |
actttgatttcataaggaagatctgattctcctaaagcaaaaagacggttgccaaacagagccaaacttgtgttgatcaatccaatgccgttaattggat |
10239480 |
T |
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| Q |
243 |
catactgaccaattaacacacgtgctacagccacggatccacgtgccgctaaaccaataagc |
304 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10239481 |
tatactgaccagttaacacacgtgctacagccacggatccacgtgccgctaaaccaataagc |
10239542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 46 - 304
Target Start/End: Original strand, 10230504 - 10230762
Alignment:
| Q |
46 |
tgtgtcggagtcaattttaggatgcgccgtcatattcatgaagagtttgccgttaaaatcataacggccgattgtttggatatcaccgttgggtgtaact |
145 |
Q |
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|||||| ||||| ||||||||||||||||||||| |||| |||||||||||||| |||||||||||||| ||||||||||| |||||||| ||||| | | |
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| T |
10230504 |
tgtgtcagagtctattttaggatgcgccgtcatactcatcaagagtttgccgttgaaatcataacggcccattgtttggatgtcaccgtttggtgttagt |
10230603 |
T |
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| Q |
146 |
ttgatttcataaggaagatctgattctcctaaagcaaaaagacggttgccaaacagagccaaacttgtgttgatcaatccaatgccgttaattggatcat |
245 |
Q |
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| T |
10230604 |
ttgacttcataaggaagatctgattctcctaaagcaaaaagacggttaccaaacagagctaaacttgtgttgaccaatccaatgccgttagatgggttat |
10230703 |
T |
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| Q |
246 |
actgaccaattaacacacgtgctacagccacggatccacgtgccgctaaaccaataagc |
304 |
Q |
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||||||| ||||||| ||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
10230704 |
actgaccggttaacacccgtgctacaaccacggatccacgtgccgctaaagcaataagc |
10230762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 43 - 235
Target Start/End: Complemental strand, 10255324 - 10255132
Alignment:
| Q |
43 |
acctgtgtcggagtcaattttaggatgcgccgtcatattcatgaagagtttgccgttaaaatcataacggccgattgtttggatatcaccgttgggtgta |
142 |
Q |
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|||||||||| ||||||||| ||||| || |||||| ||||| ||||||| |||||||||||||||||||| |||||||||||||||||||| || ||| |
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| T |
10255324 |
acctgtgtcgccgtcaattttcggatgtgcagtcatactcatggagagtttaccgttaaaatcataacggccaattgtttggatatcaccgtttggcgta |
10255225 |
T |
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| Q |
143 |
actttgatttcataaggaagatctgattctcctaaagcaaaaagacggttgccaaacagagccaaacttgtgttgatcaatccaatgccgtta |
235 |
Q |
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| T |
10255224 |
agattgatttcataaggaagatctgattctcctaaagcaaaaagtttgttaccaaacagagccaaacttgtgttggctaaaccaatgccgtta |
10255132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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