View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11001_high_13 (Length: 309)

Name: NF11001_high_13
Description: NF11001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11001_high_13
NF11001_high_13
[»] chr8 (2 HSPs)
chr8 (9-259)||(14995220-14995470)
chr8 (253-289)||(22732207-22732243)
[»] chr4 (14 HSPs)
chr4 (9-259)||(41860613-41860863)
chr4 (10-259)||(52681467-52681716)
chr4 (11-126)||(30576573-30576688)
chr4 (102-256)||(15056967-15057124)
chr4 (77-123)||(47964110-47964156)
chr4 (253-289)||(41861939-41861975)
chr4 (253-289)||(41862030-41862066)
chr4 (253-289)||(41862121-41862157)
chr4 (253-289)||(41862212-41862248)
chr4 (253-289)||(41862403-41862439)
chr4 (253-289)||(41946638-41946674)
chr4 (253-289)||(41946729-41946765)
chr4 (253-289)||(52680359-52680395)
chr4 (253-289)||(53285696-53285732)
[»] chr3 (15 HSPs)
chr3 (9-259)||(26950254-26950504)
chr3 (9-259)||(36092543-36092793)
chr3 (9-259)||(18200483-18200733)
chr3 (35-121)||(12807577-12807663)
chr3 (28-115)||(14458470-14458557)
chr3 (253-289)||(854976-855012)
chr3 (253-289)||(6953291-6953327)
chr3 (253-289)||(6953430-6953466)
chr3 (253-289)||(6953812-6953848)
chr3 (253-289)||(18199352-18199388)
chr3 (253-289)||(36093873-36093909)
chr3 (253-289)||(36093964-36094000)
chr3 (253-289)||(36947725-36947761)
chr3 (253-289)||(36947864-36947900)
chr3 (253-289)||(36948003-36948039)
[»] chr7 (11 HSPs)
chr7 (9-259)||(22005714-22005964)
chr7 (10-259)||(7892490-7892739)
chr7 (9-260)||(3598990-3599241)
chr7 (28-121)||(13604170-13604262)
chr7 (253-289)||(3600149-3600185)
chr7 (253-289)||(5090967-5091003)
chr7 (253-289)||(7891382-7891418)
chr7 (253-289)||(13927440-13927476)
chr7 (253-289)||(22004323-22004359)
chr7 (253-289)||(22004514-22004550)
chr7 (253-289)||(22004605-22004641)
[»] chr5 (7 HSPs)
chr5 (9-259)||(32674006-32674256)
chr5 (63-259)||(22636691-22636891)
chr5 (28-121)||(21122329-21122422)
chr5 (253-289)||(20844506-20844542)
chr5 (253-289)||(23179540-23179576)
chr5 (253-289)||(23179631-23179667)
chr5 (253-289)||(32672891-32672927)
[»] chr2 (9 HSPs)
chr2 (9-259)||(13906996-13907246)
chr2 (9-259)||(26454641-26454891)
chr2 (10-259)||(40604478-40604727)
chr2 (253-289)||(32287325-32287361)
chr2 (253-289)||(13899908-13899944)
chr2 (253-289)||(13905806-13905842)
chr2 (253-289)||(26453534-26453570)
chr2 (253-289)||(35433139-35433175)
chr2 (253-289)||(40603369-40603405)
[»] chr6 (1 HSPs)
chr6 (9-259)||(3590335-3590585)
[»] chr1 (7 HSPs)
chr1 (9-259)||(35595690-35595940)
chr1 (10-259)||(2045990-2046239)
chr1 (253-289)||(2051974-2052010)
chr1 (253-289)||(39514207-39514243)
chr1 (253-289)||(45507254-45507290)
chr1 (253-289)||(45507403-45507439)
chr1 (253-289)||(49791612-49791648)
[»] scaffold0121 (3 HSPs)
scaffold0121 (253-289)||(41422-41458)
scaffold0121 (253-289)||(41240-41276)
scaffold0121 (253-289)||(41331-41367)
[»] scaffold0160 (1 HSPs)
scaffold0160 (253-289)||(36132-36168)


Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 9 - 259
Target Start/End: Original strand, 14995220 - 14995470
Alignment:
Q  9 gcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgca 108  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14995220 gcaattcaaacagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgca 14995319  T
Q  109 aaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaat 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14995320 aaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaat 14995419  T
Q  209 tgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 259  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  14995420 tgaatggaaagaaagatgtgtggttaaccttagtcacaaaaaagaggagga 14995470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 22732207 - 22732243
Alignment:
Q  253 aggaggatagaaattaggaaatcatggttagggtttg 289  Q
    |||||||  ||||||||||||||||||||||||||||    
T  22732207 aggaggagtgaaattaggaaatcatggttagggtttg 22732243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 9 - 259
Target Start/End: Original strand, 41860613 - 41860863
Alignment:
Q  9 gcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgca 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41860613 gcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgca 41860712  T
Q  109 aaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaat 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41860713 aaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaat 41860812  T
Q  209 tgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 259  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  41860813 tgaatggaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 41860863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 10 - 259
Target Start/End: Complemental strand, 52681716 - 52681467
Alignment:
Q  10 caattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgcaa 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||    
T  52681716 caattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcatactcttatttcaaccccgaatttgaaaattcctgaattgcaa 52681617  T
Q  110 aatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaatt 209  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  52681616 aatcaacaaactaaaccccacaccaattatataacaattactttgattttgtaagaagcctaaaaagctgttgcaagctattttgtacaatagaggaatt 52681517  T
Q  210 gaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 259  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  52681516 gaatggaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 52681467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 126
Target Start/End: Original strand, 30576573 - 30576688
Alignment:
Q  11 aattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgcaaa 110  Q
    |||||||||| || ||| |||||||||||| ||||||| || |||||||| |||| | |||||||||||||| | | |||| ||||| ||  ||||||||    
T  30576573 aattcaaaaactcgtcgaattacaaataacaaaaaatccaattaaacaaaagctcttgctcttattccaaccgccattttggaaatttctctactgcaaa 30576672  T
Q  111 atcaacaaaccaaacc 126  Q
    || |||||||||||||    
T  30576673 atgaacaaaccaaacc 30576688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 102 - 256
Target Start/End: Complemental strand, 15057124 - 15056967
Alignment:
Q  102 aactgcaaaatcaacaaaccaaaccccacaccaatcatat----aacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtac 197  Q
    |||| ||||||||||| ||||||||  ||| |||||||||    ||||||||| ||||||||  |||||  |||| |||||||||||| |||||||| ||    
T  15057124 aactccaaaatcaacataccaaacct-acaacaatcatatgaacaacaattacgttgattttaaaagaaatctaagaagctattgcaatctattttgaac 15057026  T
Q  198 aatagaggaattgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagagga 256  Q
    || | |||||||||| |  || ||||||  |||||||| ||| ||||| ||||||||||    
T  15057025 aacaaaggaattgaaagagaataaagatacgtggttaaacttggtcacgaagaagagga 15056967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 123
Target Start/End: Original strand, 47964110 - 47964156
Alignment:
Q  77 ccaaccccgaatttgaaaattcctgaactgcaaaatcaacaaaccaa 123  Q
    |||||||| ||||||||||||| | ||||| ||||||||||||||||    
T  47964110 ccaacccctaatttgaaaattcataaactgtaaaatcaacaaaccaa 47964156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 41861939 - 41861975
Alignment:
Q  253 aggaggatagaaattaggaaatcatggttagggtttg 289  Q
    |||||||  ||||||||||||||||||||||||||||    
T  41861939 aggaggagggaaattaggaaatcatggttagggtttg 41861975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 41862030 - 41862066
Alignment:
Q  253 aggaggatagaaattaggaaatcatggttagggtttg 289  Q
    |||||||  ||||||||||||||||||||||||||||    
T  41862030 aggaggagggaaattaggaaatcatggttagggtttg 41862066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 41862121 - 41862157
Alignment:
Q  253 aggaggatagaaattaggaaatcatggttagggtttg 289  Q
    |||||||  ||||||||||||||||||||||||||||    
T  41862121 aggaggagggaaattaggaaatcatggttagggtttg 41862157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 41862212 - 41862248
Alignment:
Q  253 aggaggatagaaattaggaaatcatggttagggtttg 289  Q
    |||||||  ||||||||||||||||||||||||||||    
T  41862212 aggaggagggaaattaggaaatcatggttagggtttg 41862248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 41862403 - 41862439
Alignment:
Q  253 aggaggatagaaattaggaaatcatggttagggtttg 289  Q
    |||||||  ||||||||||||||||||||||||||||    
T  41862403 aggaggagggaaattaggaaatcatggttagggtttg 41862439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 41946638 - 41946674
Alignment:
Q  253 aggaggatagaaattaggaaatcatggttagggtttg 289  Q
    |||||||  ||||||||||||||||||||||||||||    
T  41946638 aggaggagggaaattaggaaatcatggttagggtttg 41946674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 41946729 - 41946765
Alignment:
Q  253 aggaggatagaaattaggaaatcatggttagggtttg 289  Q
    |||||||  ||||||||||||||||||||||||||||    
T  41946729 aggaggagggaaattaggaaatcatggttagggtttg 41946765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 52680395 - 52680359
Alignment:
Q  253 aggaggatagaaattaggaaatcatggttagggtttg 289  Q
    |||||||  ||||||||||||||||||||||||||||    
T  52680395 aggaggagggaaattaggaaatcatggttagggtttg 52680359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 53285732 - 53285696
Alignment:
Q  253 aggaggatagaaattaggaaatcatggttagggtttg 289  Q
    |||||||  ||||||||||||||||||||||||||||    
T  53285732 aggaggagtgaaattaggaaatcatggttagggtttg 53285696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 9 - 259
Target Start/End: Complemental strand, 26950504 - 26950254
Alignment:
Q  9 gcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgca 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26950504 gcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgca 26950405  T
Q  109 aaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaat 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26950404 aaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaat 26950305  T
Q  209 tgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 259  Q
    |||||| ||||||||||||||||||||||||||||||| | ||||||||||    
T  26950304 tgaatgcaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 26950254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 9 - 259
Target Start/End: Original strand, 36092543 - 36092793
Alignment:
Q  9 gcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgca 108  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  36092543 gcaattcaaaaagtcatcagattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcatgaactgca 36092642  T
Q  109 aaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaat 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36092643 aaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaat 36092742  T
Q  209 tgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 259  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  36092743 tgaatggaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 36092793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 9 - 259
Target Start/End: Complemental strand, 18200733 - 18200483
Alignment:
Q  9 gcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgca 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  18200733 gcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctattcttattccaaccccaaatttgaaaattcctgaactgca 18200634  T
Q  109 aaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaat 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  18200633 aaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagtctaaaaagctattgcaagctattttgtacaatagaggaat 18200534  T
Q  209 tgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 259  Q
    |||||||| ||||||||||||||||||||||||||||| | ||||||||||    
T  18200533 tgaatggagagaaagatgtgtggttaaccttagtcacataaaagaggagga 18200483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 121
Target Start/End: Original strand, 12807577 - 12807663
Alignment:
Q  35 aataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgcaaaatcaacaaacc 121  Q
    ||||||||||||||||| |||||||||| |  |||||||||   |||||| ||||||||||||| | ||||| ||||||||||||||    
T  12807577 aataaccaaaaatcaaattaaacaaatgttattactcttatcttaacccctaatttgaaaattcataaactgtaaaatcaacaaacc 12807663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 115
Target Start/End: Original strand, 14458470 - 14458557
Alignment:
Q  28 gattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgcaaaatcaa 115  Q
    |||||| ||| ||||||||| ||| ||||||||||||  |||||||||   ||| || ||||||||||||| | ||||| ||||||||    
T  14458470 gattacgaattaccaaaaataaaattaaacaaatgctattactcttatcttaactcctaatttgaaaattcataaactgtaaaatcaa 14458557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 855012 - 854976
Alignment:
Q  253 aggaggatagaaattaggaaatcatggttagggtttg 289  Q
    |||||||  ||||||||||||||||||||||||||||    
T  855012 aggaggagggaaattaggaaatcatggttagggtttg 854976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 6953291 - 6953327
Alignment:
Q  253 aggaggatagaaattaggaaatcatggttagggtttg 289  Q
    |||||||  ||||||||||||||||||||||||||||    
T  6953291 aggaggagggaaattaggaaatcatggttagggtttg 6953327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 6953430 - 6953466
Alignment:
Q  253 aggaggatagaaattaggaaatcatggttagggtttg 289  Q
    |||||||  ||||||||||||||||||||||||||||    
T  6953430 aggaggagggaaattaggaaatcatggttagggtttg 6953466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 6953812 - 6953848
Alignment:
Q  253 aggaggatagaaattaggaaatcatggttagggtttg 289  Q
    |||||||  ||||||||||||||||||||||||||||    
T  6953812 aggaggagggaaattaggaaatcatggttagggtttg 6953848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 18199388 - 18199352
Alignment:
Q  253 aggaggatagaaattaggaaatcatggttagggtttg 289  Q
    |||||||  ||||||||||||||||||||||||||||    
T  18199388 aggaggagggaaattaggaaatcatggttagggtttg 18199352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 36093873 - 36093909
Alignment:
Q  253 aggaggatagaaattaggaaatcatggttagggtttg 289  Q
    |||||||  ||||||||||||||||||||||||||||    
T  36093873 aggaggagggaaattaggaaatcatggttagggtttg 36093909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 36093964 - 36094000
Alignment:
Q  253 aggaggatagaaattaggaaatcatggttagggtttg 289  Q
    |||||||  ||||||||||||||||||||||||||||    
T  36093964 aggaggagggaaattaggaaatcatggttagggtttg 36094000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 36947725 - 36947761
Alignment:
Q  253 aggaggatagaaattaggaaatcatggttagggtttg 289  Q
    |||||||  ||||||||||||||||||||||||||||    
T  36947725 aggaggagggaaattaggaaatcatggttagggtttg 36947761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 36947864 - 36947900
Alignment:
Q  253 aggaggatagaaattaggaaatcatggttagggtttg 289  Q
    |||||||  ||||||||||||||||||||||||||||    
T  36947864 aggaggagggaaattaggaaatcatggttagggtttg 36947900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 36948003 - 36948039
Alignment:
Q  253 aggaggatagaaattaggaaatcatggttagggtttg 289  Q
    |||||||  ||||||||||||||||||||||||||||    
T  36948003 aggaggagggaaattaggaaatcatggttagggtttg 36948039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 9 - 259
Target Start/End: Complemental strand, 22005964 - 22005714
Alignment:
Q  9 gcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgca 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  22005964 gcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttatttcaaccccgaatttgaaaattcctgaactgca 22005865  T
Q  109 aaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaat 208  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22005864 aaatcaaaaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaat 22005765  T
Q  209 tgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 259  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  22005764 tgaatggaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 22005714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 10 - 259
Target Start/End: Complemental strand, 7892739 - 7892490
Alignment:
Q  10 caattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgcaa 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  7892739 caattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcatactcttatttcaaccccgaatttgaaaattcctgaactgcaa 7892640  T
Q  110 aatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaatt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7892639 aatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctgttgcaagctattttgtacaatagaggaatt 7892540  T
Q  210 gaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 259  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  7892539 gaatggaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 7892490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 9 - 260
Target Start/End: Original strand, 3598990 - 3599241
Alignment:
Q  9 gcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgca 108  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||    
T  3598990 gcaattcaaaaagtcatcgaaatacaaataaccaaaaatcaaactaaacaaatgctcccactcttattccaaccccgaatttgaaaattcctgaactaca 3599089  T
Q  109 aaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaat 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3599090 aaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaat 3599189  T
Q  209 tgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggaggat 260  Q
    |||||| ||||||||||||||||||||||||||||||| | |||||||||||    
T  3599190 tgaatgtaaagaaagatgtgtggttaaccttagtcacagataagaggaggat 3599241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 121
Target Start/End: Original strand, 13604170 - 13604262
Alignment:
Q  28 gattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgcaaaatcaacaaacc 121  Q
    |||||| ||||||||||||||||| |||||||||| |  |||||||||   |||||| ||||||||||||| | || || ||||||||||||||    
T  13604170 gattacgaataaccaaaaatcaaattaaacaaatgttattactcttatcttaacccctaatttgaaaattcat-aaatgtaaaatcaacaaacc 13604262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 3600149 - 3600185
Alignment:
Q  253 aggaggatagaaattaggaaatcatggttagggtttg 289  Q
    |||||||  ||||||||||||||||||||||||||||    
T  3600149 aggaggagggaaattaggaaatcatggttagggtttg 3600185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 5091003 - 5090967
Alignment:
Q  253 aggaggatagaaattaggaaatcatggttagggtttg 289  Q
    |||||||  ||||||||||||||||||||||||||||    
T  5091003 aggaggagtgaaattaggaaatcatggttagggtttg 5090967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 7891418 - 7891382
Alignment:
Q  253 aggaggatagaaattaggaaatcatggttagggtttg 289  Q
    |||||||  ||||||||||||||||||||||||||||    
T  7891418 aggaggagggaaattaggaaatcatggttagggtttg 7891382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 13927476 - 13927440
Alignment:
Q  253 aggaggatagaaattaggaaatcatggttagggtttg 289  Q
    |||||||  ||||||||||||||||||||||||||||    
T  13927476 aggaggagggaaattaggaaatcatggttagggtttg 13927440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 22004359 - 22004323
Alignment:
Q  253 aggaggatagaaattaggaaatcatggttagggtttg 289  Q
    |||||||  ||||||||||||||||||||||||||||    
T  22004359 aggaggagggaaattaggaaatcatggttagggtttg 22004323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 22004550 - 22004514
Alignment:
Q  253 aggaggatagaaattaggaaatcatggttagggtttg 289  Q
    |||||||  ||||||||||||||||||||||||||||    
T  22004550 aggaggagggaaattaggaaatcatggttagggtttg 22004514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 22004641 - 22004605
Alignment:
Q  253 aggaggatagaaattaggaaatcatggttagggtttg 289  Q
    |||||||  ||||||||||||||||||||||||||||    
T  22004641 aggaggagggaaattaggaaatcatggttagggtttg 22004605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 9 - 259
Target Start/End: Complemental strand, 32674256 - 32674006
Alignment:
Q  9 gcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgca 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  32674256 gcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaattgca 32674157  T
Q  109 aaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaat 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  32674156 aaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagttattttgtacaatagaggaat 32674057  T
Q  209 tgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 259  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  32674056 tgaatggaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 32674006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 63 - 259
Target Start/End: Original strand, 22636691 - 22636891
Alignment:
Q  63 ctcctactcttattccaaccccgaatttgaaaattcctgaactgcaaaatcaacaaaccaaaccccacaccaatcatat----aacaattactttgattt 158  Q
    ||||||||||| |||||||| | |||||||||| || | ||||||||||||||||||| ||||||||||||||||||||    |||||||||||||||||    
T  22636691 ctcctactctttttccaaccaccaatttgaaaactcataaactgcaaaatcaacaaacaaaaccccacaccaatcatatgaacaacaattactttgattt 22636790  T
Q  159 tgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaattgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagg 258  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||| || ||||||||||||||||  |||||||||||    
T  22636791 tgtaagaagcctaaaaagctattgcaagctattttgaacaaaagaggaattgaacggaaagaaagatatgcggttaaccttagtcacggagaagaggagg 22636890  T
Q  259 a 259  Q
    |    
T  22636891 a 22636891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 121
Target Start/End: Complemental strand, 21122422 - 21122329
Alignment:
Q  28 gattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgcaaaatcaacaaacc 121  Q
    |||||| ||||||||||||| ||| ||||||||||||  |||||||||   |||||| ||||| ||||||| |  || | ||||||||||||||    
T  21122422 gattacgaataaccaaaaataaaattaaacaaatgctattactcttatcttaacccctaatttaaaaattcatagaccgtaaaatcaacaaacc 21122329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 20844542 - 20844506
Alignment:
Q  253 aggaggatagaaattaggaaatcatggttagggtttg 289  Q
    |||||||  ||||||||||||||||||||||||||||    
T  20844542 aggaggagggaaattaggaaatcatggttagggtttg 20844506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 23179576 - 23179540
Alignment:
Q  253 aggaggatagaaattaggaaatcatggttagggtttg 289  Q
    |||||||  ||||||||||||||||||||||||||||    
T  23179576 aggaggagggaaattaggaaatcatggttagggtttg 23179540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 23179667 - 23179631
Alignment:
Q  253 aggaggatagaaattaggaaatcatggttagggtttg 289  Q
    |||||||  ||||||||||||||||||||||||||||    
T  23179667 aggaggagggaaattaggaaatcatggttagggtttg 23179631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 32672927 - 32672891
Alignment:
Q  253 aggaggatagaaattaggaaatcatggttagggtttg 289  Q
    |||||||  ||||||||||||||||||||||||||||    
T  32672927 aggaggagggaaattaggaaatcatggttagggtttg 32672891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 9 - 259
Target Start/End: Complemental strand, 13907246 - 13906996
Alignment:
Q  9 gcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgca 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  13907246 gcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttatttcaaccccgaatttgaaaattcctgaactgca 13907147  T
Q  109 aaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaat 208  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13907146 aaatcaaaaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaat 13907047  T
Q  209 tgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 259  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  13907046 tgaatggaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 13906996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 9 - 259
Target Start/End: Complemental strand, 26454891 - 26454641
Alignment:
Q  9 gcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgca 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  26454891 gcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcatactcttatttcaaccccgaatttgaaaattcctgaactgca 26454792  T
Q  109 aaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaat 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  26454791 aaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctgttgcaagctattttgtacaatagaggaat 26454692  T
Q  209 tgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 259  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  26454691 tgaatggaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 26454641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 10 - 259
Target Start/End: Complemental strand, 40604727 - 40604478
Alignment:
Q  10 caattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgcaa 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||    
T  40604727 caattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcatactcttatttcaaccccgaatttgaaaatttctgaactgcaa 40604628  T
Q  110 aatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaatt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  40604627 aatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagttgttgcaagctattttgtacaatagaggaatt 40604528  T
Q  210 gaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 259  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  40604527 gaatggaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 40604478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 32287361 - 32287325
Alignment:
Q  253 aggaggatagaaattaggaaatcatggttagggtttg 289  Q
    |||||||| ||||||||||||||||||||||||||||    
T  32287361 aggaggatggaaattaggaaatcatggttagggtttg 32287325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 13899944 - 13899908
Alignment:
Q  253 aggaggatagaaattaggaaatcatggttagggtttg 289  Q
    |||||||  ||||||||||||||||||||||||||||    
T  13899944 aggaggagggaaattaggaaatcatggttagggtttg 13899908  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 13905842 - 13905806
Alignment:
Q  253 aggaggatagaaattaggaaatcatggttagggtttg 289  Q
    |||||||  ||||||||||||||||||||||||||||    
T  13905842 aggaggagggaaattaggaaatcatggttagggtttg 13905806  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 26453570 - 26453534
Alignment:
Q  253 aggaggatagaaattaggaaatcatggttagggtttg 289  Q
    |||||||  ||||||||||||||||||||||||||||    
T  26453570 aggaggagggaaattaggaaatcatggttagggtttg 26453534  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 35433139 - 35433175
Alignment:
Q  253 aggaggatagaaattaggaaatcatggttagggtttg 289  Q
    |||||||  ||||||||||||||||||||||||||||    
T  35433139 aggaggagggaaattaggaaatcatggttagggtttg 35433175  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 40603405 - 40603369
Alignment:
Q  253 aggaggatagaaattaggaaatcatggttagggtttg 289  Q
    |||||||  ||||||||||||||||||||||||||||    
T  40603405 aggaggagggaaattaggaaatcatggttagggtttg 40603369  T

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Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 9 - 259
Target Start/End: Complemental strand, 3590585 - 3590335
Alignment:
Q  9 gcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgca 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  3590585 gcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattgctgaactgca 3590486  T
Q  109 aaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaat 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  3590485 aaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagtctaaaaagctattgcaagctattttgtacaatagaggaat 3590386  T
Q  209 tgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 259  Q
    ||||| || ||||||||||||||||||||||||||||| | ||||||||||    
T  3590385 tgaatagagagaaagatgtgtggttaaccttagtcacataaaagaggagga 3590335  T

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Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 9 - 259
Target Start/End: Original strand, 35595690 - 35595940
Alignment:
Q  9 gcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgca 108  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  35595690 gcaattcaaaaagtcaacggattacaaataaccaaaaatcaaactaaacaaatgctcccactcttattccaaccccgaatttgaaaattcctgaactgca 35595789  T
Q  109 aaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaat 208  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35595790 aaatcaacaaaccaaatcccacaccaatcatataacaattattttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaat 35595889  T
Q  209 tgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 259  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  35595890 tgaatggaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 35595940  T

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Target: chr1; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 10 - 259
Target Start/End: Original strand, 2045990 - 2046239
Alignment:
Q  10 caattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgcaa 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  2045990 caattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaataaatgctcatactcttatttcaaccccgaatttgaaaattcctgaactgcaa 2046089  T
Q  110 aatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaatt 209  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2046090 aataaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctgttgcaagctattttgtacaatagaggaatt 2046189  T
Q  210 gaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 259  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  2046190 gaatggaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 2046239  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 2051974 - 2052010
Alignment:
Q  253 aggaggatagaaattaggaaatcatggttagggtttg 289  Q
    |||||||  ||||||||||||||||||||||||||||    
T  2051974 aggaggagggaaattaggaaatcatggttagggtttg 2052010  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 39514207 - 39514243
Alignment:
Q  253 aggaggatagaaattaggaaatcatggttagggtttg 289  Q
    |||||||  ||||||||||||||||||||||||||||    
T  39514207 aggaggagggaaattaggaaatcatggttagggtttg 39514243  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 45507254 - 45507290
Alignment:
Q  253 aggaggatagaaattaggaaatcatggttagggtttg 289  Q
    |||||||  ||||||||||||||||||||||||||||    
T  45507254 aggaggagggaaattaggaaatcatggttagggtttg 45507290  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 45507403 - 45507439
Alignment:
Q  253 aggaggatagaaattaggaaatcatggttagggtttg 289  Q
    |||||||  ||||||||||||||||||||||||||||    
T  45507403 aggaggagggaaattaggaaatcatggttagggtttg 45507439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 49791612 - 49791648
Alignment:
Q  253 aggaggatagaaattaggaaatcatggttagggtttg 289  Q
    |||||||  ||||||||||||||||||||||||||||    
T  49791612 aggaggagggaaattaggaaatcatggttagggtttg 49791648  T

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Target: scaffold0121 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 41458 - 41422
Alignment:
Q  253 aggaggatagaaattaggaaatcatggttagggtttg 289  Q
    |||||||| ||||||||||||||||||||||||||||    
T  41458 aggaggatggaaattaggaaatcatggttagggtttg 41422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 41276 - 41240
Alignment:
Q  253 aggaggatagaaattaggaaatcatggttagggtttg 289  Q
    |||||||  ||||||||||||||||||||||||||||    
T  41276 aggaggagggaaattaggaaatcatggttagggtttg 41240  T

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Target: scaffold0121; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 41367 - 41331
Alignment:
Q  253 aggaggatagaaattaggaaatcatggttagggtttg 289  Q
    |||||||  ||||||||||||||||||||||||||||    
T  41367 aggaggagggaaattaggaaatcatggttagggtttg 41331  T

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Target: scaffold0160 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 36168 - 36132
Alignment:
Q  253 aggaggatagaaattaggaaatcatggttagggtttg 289  Q
    |||||||  ||||||||||||||||||||||||||||    
T  36168 aggaggagggaaattaggaaatcatggttagggtttg 36132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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