View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11001_high_14 (Length: 304)
Name: NF11001_high_14
Description: NF11001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11001_high_14 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 16490298 - 16490616
Alignment:
| Q |
1 |
atccgtcttatccgtgtatggaaaattattggtgaaatagaactctgaaacatgtatgttttttccagtgttcatgggatcttggc--atatataaatat |
98 |
Q |
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| T |
16490298 |
atccgtcttatctgtgtatggaaaattattggtgaaatagaactctgaaacatgtatgttttttccagtgttcatgggatgttggcatatatataaatat |
16490397 |
T |
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| Q |
99 |
aaattgactatcatcctaaaacttatactaactattctctgaaaagacattacatgcaagcaaatttcattat-------------atgtaacatgacca |
185 |
Q |
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| T |
16490398 |
aaattgactatcatcctaaaacttatactaactattctctcaaaagacattacatgcaagcaaatttcattatcaaacgatgcctgatgtaacatgacca |
16490497 |
T |
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| Q |
186 |
accatggctctattgctcttaattgtcaatacttgtactagttattaggtctttggaattacttaatgttgtttatttttgctgtttctaattttgtttc |
285 |
Q |
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| T |
16490498 |
accatggctctattgctgttaattgtcaatacttgtactagttattaggtctttggaattacttaatgttgtttatttttgctgcttctaattttgtttc |
16490597 |
T |
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| Q |
286 |
atcatttgttgttgatctc |
304 |
Q |
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| T |
16490598 |
atcatttgttgttgatctc |
16490616 |
T |
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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 218 - 301
Target Start/End: Complemental strand, 7034443 - 7034359
Alignment:
| Q |
218 |
ttgtactagttattaggtctttggaattacttaatgttgtttatttttgctgtttctaattttgtttcatcattt-gttgttgat |
301 |
Q |
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| T |
7034443 |
ttgtactagtttttagttatctggaattacttcgtgatgtttattcttgctgtttctaattctgtttcatcatttggttgttgat |
7034359 |
T |
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