View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11001_high_4 (Length: 368)
Name: NF11001_high_4
Description: NF11001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11001_high_4 |
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| [»] scaffold0428 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 278; Significance: 1e-155; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 30 - 353
Target Start/End: Complemental strand, 31564649 - 31564316
Alignment:
| Q |
30 |
aatatgactgtataagttcaaatacatcaatccacaagaggcaaaacaatatgagaagatgggcaaaatggaagtataattcattttttctcttttacat |
129 |
Q |
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||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
31564649 |
aatatgagtgtataagttcaaatatatcaatccacaagaggcaaaacaatatgaaaagatgggcaaaatggaagtataattaattttttctcttttacat |
31564550 |
T |
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| Q |
130 |
------gtaaaaattgaaatacatgtataaattcaaatctgtctaacatatttacttctattagatgtagaaaaattagaatagaaaca----gcaaata |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
31564549 |
ttacatgtaaaaattgaaatacatgtataaattcaaatctgtctaacatatttacttctattagatgtagaaaaattagaatagaaacattaagcaaata |
31564450 |
T |
|
| Q |
220 |
agatgaaattgaaaccattactcgagcctttgtctgaagaagtaatgccggtttgtccattagaattagataagttgttgtttgtctcggatgcaattgc |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31564449 |
agatgaaattgaaaccattactcgagcctttgtctgaagaagtaatgccggtttgtccattagaattagataagttgttgtttgtctcggatgcaattgc |
31564350 |
T |
|
| Q |
320 |
aacttcttcatcttcaacttgtactaccacaggt |
353 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
31564349 |
aacttcttcatcttcaacttgtactaccacaggt |
31564316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 94 - 258
Target Start/End: Original strand, 33416366 - 33416536
Alignment:
| Q |
94 |
aaaatggaagtataat--tcattttttctcttttacatgtaaaaattgaaatacatgtataaattcaaatctgtctaacatatttacttctattagatgt |
191 |
Q |
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|||||||||||||| | || ||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||| | |
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| T |
33416366 |
aaaatggaagtatattcatcttttcttctcttttacatgtaaaaactgaaatacatgtataaattcaaatctgtccaacatatttacttctatttgatat |
33416465 |
T |
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| Q |
192 |
agaaaaattagaatagaaa----cagcaaataagatgaaattgaaaccattactcgagcctttgtctgaag |
258 |
Q |
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|||||||| ||||| |||| ||||||||||||||||| |||||| ||||||||||||| ||||||| |
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| T |
33416466 |
agaaaaatgagaattgaaatatgaagcaaataagatgaaatggaaacctttactcgagccttcatctgaag |
33416536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 215 - 344
Target Start/End: Original strand, 33385707 - 33385837
Alignment:
| Q |
215 |
aaataagatgaaattgaaaccattactcgagcctttgtctgaagaagtaatgccggtttgtccattagaattagataagttgttgtttg-tctcggatgc |
313 |
Q |
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|||||||||||||||| |||| || ||| |||||| ||||| | ||||| ||||||||||||||||| ||||||| | ||||||||| | | |||| |
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| T |
33385707 |
aaataagatgaaattgcaacctttgctcaagccttcatctgacgctgtaattccggtttgtccattagagttagatacgctgttgtttgttttttaatgc |
33385806 |
T |
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| Q |
314 |
aattgcaacttcttcatcttcaacttgtact |
344 |
Q |
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|||||||||||||||| |||||||||||||| |
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| T |
33385807 |
aattgcaacttcttcaccttcaacttgtact |
33385837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 329
Target Start/End: Original strand, 33281320 - 33281376
Alignment:
| Q |
270 |
gtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttcttca |
329 |
Q |
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| T |
33281320 |
gtttgtccattagaattagata---tgctgtttgtctcggatgcaattgcaacctcttca |
33281376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 287 - 341
Target Start/End: Original strand, 33416538 - 33416592
Alignment:
| Q |
287 |
agataagttgttgtttgtctcggatgcaattgcaacttcttcatcttcaacttgt |
341 |
Q |
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| T |
33416538 |
agataagttgctgtttgtttcagatgcaattgcaaccgcttcatcttcaacttgt |
33416592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 329
Target Start/End: Original strand, 33301947 - 33302003
Alignment:
| Q |
270 |
gtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttcttca |
329 |
Q |
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|||||||||||||||||||||| || ||||||||||||||||||| ||||| |||||| |
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| T |
33301947 |
gtttgtccattagaattagata---tgatgtttgtctcggatgcaatagcaacctcttca |
33302003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 95 - 249
Target Start/End: Complemental strand, 30653360 - 30653203
Alignment:
| Q |
95 |
aaatggaagtataattcattttttctcttttacatgtaaaaattgaaatacatgtataaattcaaatctgtctaacatatttacttctattagatgtaga |
194 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||| |||||| | |||||||| || |
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| T |
30653360 |
aaatggaagtataatttattttttctcttttacatgtaaaaaccgaaagacatgtataagttcaaatctgtctaacataattactt-tgttagatgttga |
30653262 |
T |
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| Q |
195 |
aaaattagaatagaaaca----gcaaataagatgaaattgaaaccattactcgagcctt |
249 |
Q |
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|||||||||||||||||| ||||||||||||||||| |||| ||||||||||||| |
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| T |
30653261 |
aaaattagaatagaaacatgacgcaaataagatgaaattttaacctttactcgagcctt |
30653203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 212 - 341
Target Start/End: Complemental strand, 17443503 - 17443374
Alignment:
| Q |
212 |
agcaaataagatgaaattgaaaccattactcgagcctttgtctgaagaagtaatgccggtttgtccattagaattagataagttgttgtttgtctcggat |
311 |
Q |
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||||||||||||||||||| |||| || || |||||| ||||||| ||||||| ||||||||||||||| ||||||| | |||||||| || || |
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| T |
17443503 |
agcaaataagatgaaattgcaacctttggtcaagccttcatctgaagctgtaatgctggtttgtccattagagttagatacgccattgtttgtttcaaat |
17443404 |
T |
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| Q |
312 |
gcaattgcaacttcttcatcttcaacttgt |
341 |
Q |
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|||||||||||||||||| |||||||||| |
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| T |
17443403 |
gcaattgcaacttcttcacgttcaacttgt |
17443374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 329
Target Start/End: Complemental strand, 12932 - 12876
Alignment:
| Q |
270 |
gtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttcttca |
329 |
Q |
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|||||||||||||||||||||| || ||||||||||||||||||||||||| |||||| |
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| T |
12932 |
gtttgtccattagaattagata---tgctgtttgtctcggatgcaattgcaacctcttca |
12876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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