View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11001_high_5 (Length: 364)
Name: NF11001_high_5
Description: NF11001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11001_high_5 |
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| [»] chr7 (3 HSPs) |
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| [»] chr2 (3 HSPs) |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-157; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 13 - 364
Target Start/End: Original strand, 39984569 - 39984920
Alignment:
| Q |
13 |
gcagcgcccatgtcaggacctgcaccaccttggtacatcttggcaatgatagggttgcagacactttccaattccttcatcttgtcctcaaactcatctg |
112 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||| | |
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| T |
39984569 |
gcagcacccatgtcaggacctgcaccaccttggtacatcttggcaatgatagggttgcagacaccttcaagttccttcatcttgtcctcaaactcatcag |
39984668 |
T |
|
| Q |
113 |
cctctgcaagctggttagcatctagccactggatagcagcctcaatggtgtcctcaatcttcttcttgtcatcggaatcaagctttcctgcaatcttgtc |
212 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||| || || |
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| T |
39984669 |
cctctgcaagctggttggcatctagccactggatagcagcctcaatggtgtcctcgatcttctttttgtcatccgaatcaagctttcctgcaattttttc |
39984768 |
T |
|
| Q |
213 |
atccttaattgtgttcctcatgttgtatgcataattttccaatgcattcttggcctcgaccttcttcttatgttcttcatcctcggacttgtacttctct |
312 |
Q |
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||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||| |
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| T |
39984769 |
atccttaatggtgttcctcatgttgtatgcatagttttccaatgcattcttggcctcgaccttcttcttatgctcttcatcttccgacttgtacttctct |
39984868 |
T |
|
| Q |
313 |
gcctcttgaaccatcttctcaatatcttccttagaaagtctacccttgtcat |
364 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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|
| T |
39984869 |
gcctcttgaaccatcttctcaatgtcttcctttgaaagtctacccttgtcat |
39984920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 37 - 364
Target Start/End: Complemental strand, 8018634 - 8018307
Alignment:
| Q |
37 |
ccaccttggtacatcttggcaatgatagggttgcagacactttccaattccttcatcttgtcctcaaactcatctgcctctgcaagctggttagcatcta |
136 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||| | || || | |||||||||||| || ||||||||||| |||||||| | ||||||| || | |
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| T |
8018634 |
ccaccttgatacatcttggcaatgattgggttgcaaaggctctcaagttccttcatcttatcttcaaactcatcagcctctgccaactggttactgtcca |
8018535 |
T |
|
| Q |
137 |
gccactggatagcagcctcaatggtgtcctcaatcttcttcttgtcatcggaatcaagctttcctgcaatcttgtcatccttaattgtgttcctcatgtt |
236 |
Q |
| |
|
|||||| || ||||| ||||| | || ||||||||||| ||||| || | ||||||| ||||||| || || |||||||||||||||||||| |
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| T |
8018534 |
accactgaattgcagcgtcaattgcatcatcaatcttctttttgtcctcaggtgaaagctttgaaccaatcttctcgtctttaattgtgttcctcatgtt |
8018435 |
T |
|
| Q |
237 |
gtatgcataattttccaatgcattcttggcctcgaccttcttcttatgttcttcatcctcggacttgtacttctctgcctcttgaaccatcttctcaata |
336 |
Q |
| |
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||| || || |||||||| |||||||| || || |||||||| || ||||| || || || | |||||| || ||||| || | ||||||||||||||| |
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| T |
8018434 |
gtaagcgtagttttccaaagcattctttgcatcaaccttctttttgtgttcctcgtcttcagccttgtatttttctgcttcctcaaccatcttctcaatt |
8018335 |
T |
|
| Q |
337 |
tcttccttagaaagtctacccttgtcat |
364 |
Q |
| |
|
||||||||||| | ||||| ||||||| |
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|
| T |
8018334 |
tcttccttagacaacctacctttgtcat |
8018307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 37 - 344
Target Start/End: Original strand, 8101614 - 8101921
Alignment:
| Q |
37 |
ccaccttggtacatcttggcaatgatagggttgcagacactttccaattccttcatcttgtcctcaaactcatctgcctctgcaagctggttagcatcta |
136 |
Q |
| |
|
||||||||||||||||| |||||||| ||||| |||| | || | |||||||||||||| ||||||||||| || || ||||||||||| ||||| | |
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| T |
8101614 |
ccaccttggtacatctttgcaatgattgggttacagattgtctcaagctccttcatcttgtcttcaaactcatcggcttcagcaagctggtttgcatcaa |
8101713 |
T |
|
| Q |
137 |
gccactggatagcagcctcaatggtgtcctcaatcttcttcttgtcatcggaatcaagctttcctgcaatcttgtcatccttaattgtgttcctcatgtt |
236 |
Q |
| |
|
|||| || || || ||||||| | |||||||||| ||||||||| | ||||||| ||||| || || ||||| ||||| |||||||| |
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| T |
8101714 |
gccattgaatggctccctcaattgcatcctcaatctgcttcttgtctcctcctgaaagctttgaactgatcttctcgtctttaatggtgtttctcatgtt |
8101813 |
T |
|
| Q |
237 |
gtatgcataattttccaatgcattcttggcctcgaccttcttcttatgttcttcatcctcggacttgtacttctctgcctcttgaaccatcttctcaata |
336 |
Q |
| |
|
||||||||| || ||||| | ||||| ||||| ||||||||||| || || ||||| || |||||| |||||||| ||||| ||||||||||| || |
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|
| T |
8101814 |
gtatgcatagttctccaaggagttctttgcctcaaccttcttcttgtgctcctcatcttcactcttgtatttctctgcttcttggaccatcttctcgatt |
8101913 |
T |
|
| Q |
337 |
tcttcctt |
344 |
Q |
| |
|
|||||||| |
|
|
| T |
8101914 |
tcttcctt |
8101921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 20 - 364
Target Start/End: Complemental strand, 17649544 - 17649211
Alignment:
| Q |
20 |
ccatgtcaggacctgcaccaccttggtacatcttggcaatgatagggttgcagacactttccaattccttcatcttgtcctcaaactcatctgcctctgc |
119 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| | | |||||||||||| ||||||||||||||||||| | | |
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|
| T |
17649544 |
ccatgtcaagacctgcaccaccttggtacatcttggcaatgatagggttgccgacacctcgcggttccttcatcttatcctcaaactcatctgcctattc |
17649445 |
T |
|
| Q |
120 |
aagctggttagcatctagccactggatagcagcctcaatggtgtcctcaatcttcttcttgtcatcggaatcaagctttcctgcaatcttgtcatcctta |
219 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||| ||||||||| ||||| ||| |
|
|
| T |
17649444 |
aagctggtt-gggtctagccactggatagcagcctcaatggtgtcctcaa---tcttcttgtctttggaatcaagctttcatgcaatcttttcatcatta |
17649349 |
T |
|
| Q |
220 |
attgtgttcctcatgttgtatgcataattttccaatgcattcttggcctcgaccttcttcttatgttcttcatcctcggacttgtacttctctgcctctt |
319 |
Q |
| |
|
|| |||||||||||||||| ||| |||||||||||||||||| ||| || || |||||| |||||||| || ||||||||||||||||||||| |
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|
| T |
17649348 |
atggtgttcctcatgttgt----atagttttccaatgcattcttgtccttaac---ctacttatgctcttcatcttccgacttgtacttctctgcctctc |
17649256 |
T |
|
| Q |
320 |
gaaccatcttctcaatatcttccttagaaagtctacccttgtcat |
364 |
Q |
| |
|
|||||||||||||||| | |||||| ||||||||||||||||||| |
|
|
| T |
17649255 |
gaaccatcttctcaatgttttcctttgaaagtctacccttgtcat |
17649211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 20 - 364
Target Start/End: Complemental strand, 17706911 - 17706577
Alignment:
| Q |
20 |
ccatgtcaggacctgcaccaccttggtacatcttggcaatgatagggttgcagacactttccaattccttcatcttgtcctcaaactcatctgcctctgc |
119 |
Q |
| |
|
||||| || |||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
17706911 |
ccatgccaagaccagcaccaccttggtacatcttggcaatgatagggttgcagacaccttctggttccttcatcttgtcctcaaactcatctgcctctgc |
17706812 |
T |
|
| Q |
120 |
aagctggttagcatctagccactggatagcagcctcaatggtgtcctcaatcttcttcttgtcatcggaatcaagctttcctgcaatcttgtcatcctta |
219 |
Q |
| |
|
|||||| || || ||||||||| |||||| ||||||||||||||||||||| ||||| ||| | |||||||||||||||||||||||| ||||||||| |
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|
| T |
17706811 |
aagctgattggcgtctagccaccggatagtagcctcaatggtgtcctcaattttctt---gtctttggaatcaagctttcctgcaatcttttcatcctta |
17706715 |
T |
|
| Q |
220 |
attgtgttcctcatgttgtatgcataattttccaatgcattcttggcctcgaccttcttcttatgttcttcatcctcggacttgtacttctctgcctctt |
319 |
Q |
| |
|
|| |||| |||| |||||||| | ||||||| |||||||||||||| |||| ||| ||| |||| | | || || ||||||||||| |||||| |
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|
| T |
17706714 |
atggtgtccctcgtgttgtat----agttttccatagcattcttggcctcaacctcctt---atgctcttaaacttctgagttgtacttctccgcctctc |
17706622 |
T |
|
| Q |
320 |
gaaccatcttctcaatatcttccttagaaagtctacccttgtcat |
364 |
Q |
| |
|
|||| ||||||||||| ||||||| |||||||| |||||||||| |
|
|
| T |
17706621 |
gaactatcttctcaatgacttcctttgaaagtcttcccttgtcat |
17706577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 293
Target Start/End: Complemental strand, 17722122 - 17722080
Alignment:
| Q |
251 |
ccaatgcattcttggcctcgaccttcttcttatgttcttcatc |
293 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||| |||||||| |
|
|
| T |
17722122 |
ccaatgcattcttggcctcaacctccttcttatgctcttcatc |
17722080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 38 - 364
Target Start/End: Complemental strand, 23588953 - 23588627
Alignment:
| Q |
38 |
caccttggtacatcttggcaatgatagggttgcagacactttccaattccttcatcttgtcctcaaactcatctgcctctgcaagctggttagcatctag |
137 |
Q |
| |
|
||||||| |||||| | ||||||||||||||||| | | |||| |||||||||||||||||||| ||||| |||||| |||| || || |||| | |
|
|
| T |
23588953 |
caccttgatacatccttgcaatgatagggttgcaaatgccctccagctccttcatcttgtcctcaaattcatcagcctctccaagttgatttccatccaa |
23588854 |
T |
|
| Q |
138 |
ccactggatagcagcctcaatggtgtcctcaatcttcttcttgtcatcggaatcaagctttcctgcaatcttgtcatccttaattgtgttcctcatgttg |
237 |
Q |
| |
|
||| || ||||| ||||||| | || ||||| |||||||| ||||| | | | ||| ||||||||||| || || |||||||||||||||||| |
|
|
| T |
23588853 |
ccattgaatagccccctcaatagcatcttcaattttcttcttatcatcagcagacaacttcgaagcaatcttgtcgtctttgattgtgttcctcatgttg |
23588754 |
T |
|
| Q |
238 |
tatgcataattttccaatgcattcttggcctcgaccttcttcttatgttcttcatcctcggacttgtacttctctgcctcttgaaccatcttctcaatat |
337 |
Q |
| |
|
|| ||||| || || | ||||||||||||||| || ||||| || || || || ||||| ||||||||||| || || || || |||||||||||||| | |
|
|
| T |
23588753 |
taggcatagttctcaagtgcattcttggcctccactttctttttgtgctcctcgtcctcagacttgtacttttcagcttcctgcaccatcttctcaattt |
23588654 |
T |
|
| Q |
338 |
cttccttagaaagtctacccttgtcat |
364 |
Q |
| |
|
||||||| || || ||||||||||||| |
|
|
| T |
23588653 |
cttccttggagagcctacccttgtcat |
23588627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 38 - 364
Target Start/End: Complemental strand, 23597805 - 23597479
Alignment:
| Q |
38 |
caccttggtacatcttggcaatgatagggttgcagacactttccaattccttcatcttgtcctcaaactcatctgcctctgcaagctggttagcatctag |
137 |
Q |
| |
|
||||||| |||||| | ||||||||||||||||| | || |||| |||||||||||||||||||| ||||| |||||| |||| || || |||| | |
|
|
| T |
23597805 |
caccttgatacatccttgcaatgatagggttgcaaataccctccagctccttcatcttgtcctcaaattcatcagcctctccaagttgatttccatccaa |
23597706 |
T |
|
| Q |
138 |
ccactggatagcagcctcaatggtgtcctcaatcttcttcttgtcatcggaatcaagctttcctgcaatcttgtcatccttaattgtgttcctcatgttg |
237 |
Q |
| |
|
||| || ||||| ||||||| | || ||||| |||||||| ||||| | | ||| ||||||||||| || || |||||||||||||||||| |
|
|
| T |
23597705 |
ccattgaatagccccctcaatagcatcttcaattttcttcttatcatcagccgacaacttcgaagcaatcttgtcgtctttgattgtgttcctcatgttg |
23597606 |
T |
|
| Q |
238 |
tatgcataattttccaatgcattcttggcctcgaccttcttcttatgttcttcatcctcggacttgtacttctctgcctcttgaaccatcttctcaatat |
337 |
Q |
| |
|
|| ||||| || || | ||||| |||||||| |||||| | || || || ||||||||||| |||||||| || || || || ||||| |||||||| | |
|
|
| T |
23597605 |
taggcatagttctcaagcgcatttttggcctccaccttccttttgtgctcctcatcctcggatttgtacttttccgcttcctgcaccattttctcaatgt |
23597506 |
T |
|
| Q |
338 |
cttccttagaaagtctacccttgtcat |
364 |
Q |
| |
|
| ||||| || || ||||||||||||| |
|
|
| T |
23597505 |
cctccttggagagcctacccttgtcat |
23597479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 203 - 344
Target Start/End: Original strand, 54395536 - 54395677
Alignment:
| Q |
203 |
caatcttgtcatccttaattgtgttcctcatgttgtatgcataattttccaatgcattcttggcctcgaccttcttcttatgttcttcatcctcggactt |
302 |
Q |
| |
|
||||||| |||||||||||||| |||||||| || || |||||||| || | || |||||| ||||| || |||||||| ||||||||||| | ||| |
|
|
| T |
54395536 |
caatcttctcatccttaattgtattcctcatattataagcataattctcaattgaattcttcgcctccactttcttcttcacctcttcatcctctgcctt |
54395635 |
T |
|
| Q |
303 |
gtacttctctgcctcttgaaccatcttctcaatatcttcctt |
344 |
Q |
| |
|
||||||||||| |||| ||||||||||| || |||||||| |
|
|
| T |
54395636 |
atacttctctgcatctttcaccatcttctctatctcttcctt |
54395677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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