View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11001_low_1 (Length: 675)
Name: NF11001_low_1
Description: NF11001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11001_low_1 |
 | |
|
| [»] scaffold0692 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 592; Significance: 0; HSPs: 22)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 19 - 659
Target Start/End: Original strand, 11048627 - 11049267
Alignment:
| Q |
19 |
gttaagaagaacattacttgcctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatg |
118 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11048627 |
gttaagaagaacattacttggctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatg |
11048726 |
T |
|
| Q |
119 |
tttaacctatgaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgtaaccattgttctaagcttccatttttcatgtaatcaaaaa |
218 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11048727 |
tttaacctatcaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgtaaccattgttctaagcttccatttttcatgtaatcaaaaa |
11048826 |
T |
|
| Q |
219 |
ctagagctttaaattcttcacctttgtaatctgtactagaacaacaggttaaaaccttaactaagtttcagtgtctaatgtttttgagtgcattacattc |
318 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
11048827 |
ctagtgctttaaattcttcacctttgtaatctgtactagaacaacaggttaaaaccttaactaagtttcggtgtctaatgtttttgagtgcattacattc |
11048926 |
T |
|
| Q |
319 |
aacaatgaaactcttgctagctccattgttttggaggttgaagactttcacagcaacaacattaccttccgacacaagatttcctctgtacacagaaccg |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11048927 |
aacaatgaaactcttgctagctccattgttttggaggttgaagactttcacagcaacaacattaccttccgacacaagatttcctctgtacacagaaccg |
11049026 |
T |
|
| Q |
419 |
aaacctcctgatccaatcaagtttttatctgagaatccatcggttccttgatgtaaatcttggtatgaaactttagctagttgatcaattgttggtgaat |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
11049027 |
aaacctcctgatccaatcaagtttttatctgagaatccatcggttccttgatgtaaatcttggtatgaaactttatctagttgatcaattgttggtgaat |
11049126 |
T |
|
| Q |
519 |
caaaagatggtttttggtttcnnnnnnncatccaggtgataattataatgaatgaaagtatgataagaaaagaaaccacactaactatcactgataccaa |
618 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11049127 |
caaaagatggtttttggtttctttttttcatccaggtgataattataataaatgaaagtatgataagaaaagaaaccacactaactatcactgataccaa |
11049226 |
T |
|
| Q |
619 |
cctgaaattatggtgtgttgcatgttttctacctttgatag |
659 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
11049227 |
cctgaaattatggtttgttgcatgttttctacctttgatag |
11049267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 23 - 659
Target Start/End: Original strand, 10216723 - 10217361
Alignment:
| Q |
23 |
agaagaacattacttgcctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgttta |
122 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
10216723 |
agaagaacattgcttggctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaatgccgaagcaacatcgataatgatgttta |
10216822 |
T |
|
| Q |
123 |
acctatgaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgtaaccattgttctaagcttccatttttcatgtaatcaaaaactag |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
10216823 |
acctatgaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgcaaccattgttctaagcttccatttttcatgtaataaaaaactag |
10216922 |
T |
|
| Q |
223 |
agctttaaattcttcacctttgtaatctgtactagaacaacaggttaaaaccttaactaagtttcagtgtctaatgtttttgagtgcattacattcaaca |
322 |
Q |
| |
|
|||||||||||||| ||||||||| | ||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
10216923 |
agctttaaattcttgacctttgtagtttgtactagaacaacatgttaaaaccttaactgagtttcggtgtctaatgtttttgagtgcattacattcaaca |
10217022 |
T |
|
| Q |
323 |
atgaaactcttgctagctccattgttttggaggttgaagactttcacagcaacaacattaccttccgacacaagatttcctctgtacacagaaccgaaac |
422 |
Q |
| |
|
|| |||||||||||||||||||| ||||||||||| | ||| |||||||||||||||||| |||| ||||||||||| || || |||||| |||| |||| |
|
|
| T |
10217023 |
ataaaactcttgctagctccattcttttggaggtttaggaccttcacagcaacaacattaacttctgacacaagattcccgctatacacacaaccaaaac |
10217122 |
T |
|
| Q |
423 |
ctcctgatccaatcaagtttttatctgagaatccatcggttccttgatgtaaatcttggtatgaaactttagctagttgatcaattgttggtgaatcaaa |
522 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
10217123 |
ttcctgatccaatcaagtttttatccgagaacccatcagttccttgatgtaagtcttggtatgaaactttagctagttgatcgattgttggtgaatcaaa |
10217222 |
T |
|
| Q |
523 |
agatggtttttggtttcnnnnnnncatccaggtgataattataatgaatgaaagtatgataagaaaagaaaccacactaacta--tcactgataccaacc |
620 |
Q |
| |
|
|||||| |||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
10217223 |
agatggattttggtttctttttttcatccaagtgataattataataaatgaaagtatgataagaaaagaaaccacactaactatctcactgatatcaacc |
10217322 |
T |
|
| Q |
621 |
tgaaattatggtgtgttgcatgttttctacctttgatag |
659 |
Q |
| |
|
|| |||||| || |||||||||||| ||||| ||||||| |
|
|
| T |
10217323 |
tggaattatagtttgttgcatgtttcctaccgttgatag |
10217361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 22 - 659
Target Start/End: Original strand, 10740672 - 10741309
Alignment:
| Q |
22 |
aagaagaacattacttgcctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgttt |
121 |
Q |
| |
|
|||||| ||||| |||| ||||||||||||||||| | |||||| ||||||||||| || |||||||||||||||| || |||||| | ||||||||| |
|
|
| T |
10740672 |
aagaaggacattgcttggctttagatcacaatgaaggaccaattgttcacattcttggtgaagataatgtaatgcagtggcgacatcgttcatgatgttt |
10740771 |
T |
|
| Q |
122 |
aacctatgaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgtaaccattgttctaagcttccatttttcatgtaatcaaaaacta |
221 |
Q |
| |
|
|| ||||||||||||||||||||| ||||||| |||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
10740772 |
aatctatgaccaaggtccaatgttcttggatgatctgcatttaaaatctcaagatgcaaccattgttctaagcttccatttttcatgtaatcaaaaacaa |
10740871 |
T |
|
| Q |
222 |
gagctttaaattcttcacctttgtaatctgtactagaacaacaggttaaaaccttaactaagtttcagtgtctaatgtttttgagtgcattacattcaac |
321 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||||||| || |||| ||||||||| |||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
10740872 |
gagctttaaaagtttgacctttgtaatctgtactagaacaacatgtcaaaatcttaactaaatttcggtgtctaatatttttgagtgcattacattcaac |
10740971 |
T |
|
| Q |
322 |
aatgaaactcttgctagctccattgttttggaggttgaagactttcacagcaacaacattaccttccgacacaagatttcctctgtacacagaaccgaaa |
421 |
Q |
| |
|
||||||||||||| |||||| || |||| |||||| ||||| || || ||||||||||| |||| | ||||||||||||| ||||||||||||| ||| |
|
|
| T |
10740972 |
aatgaaactcttgtgagctcccttctttttgaggttcaagacctttacggcaacaacattgtcttctgtcacaagatttcctttgtacacagaaccaaaa |
10741071 |
T |
|
| Q |
422 |
cctcctgatccaatcaagtttttatctgagaatccatcggttccttgatgtaaatcttggtatgaaactttagctagttgatcaattgttggtgaatcaa |
521 |
Q |
| |
|
| ||||||||| ||||||||| | |||||||| |||||||||||| | ||||| ||||| |||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
10741072 |
cttcctgatccgatcaagtttctttctgagaacccatcggttcctcggtgtaagtcttgatatgaaaccttagctagttgatcaatagttggtgaatcaa |
10741171 |
T |
|
| Q |
522 |
aagatggtttttggtttcnnnnnnncatccaggtgataattataatgaatgaaagtatgataagaaaagaaaccacactaactatcactgataccaacct |
621 |
Q |
| |
|
| ||||| |||||||||| ||||||| |||| |||| ||||||||||||| |||||||||| ||| ||||||||||||| || |||| | |
|
|
| T |
10741172 |
aggatgggttttggtttctcttcctcatccagcagatagaaataacaaatgaaagtatgagcagaaaagaaatcacgctaactatcactgctatcaactt |
10741271 |
T |
|
| Q |
622 |
gaaattatggtgtgttgcatgttttctacctttgatag |
659 |
Q |
| |
|
||||||||| | | |||||||||| ||| | ||||||| |
|
|
| T |
10741272 |
gaaattatgtttttttgcatgtttactatccttgatag |
10741309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 22 - 659
Target Start/End: Complemental strand, 10565263 - 10564626
Alignment:
| Q |
22 |
aagaagaacattacttgcctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgttt |
121 |
Q |
| |
|
|||||| | ||| |||| |||||||||||||||||| | ||||| ||||||||| ||| |||||||||||||||||||||||||||||||| |||| | |
|
|
| T |
10565263 |
aagaaggatattgcttggctttagatcacaatgaatgaccaattcttcacattctctatgaagataatgtaatgcagaagcaacatcgataataatgtat |
10565164 |
T |
|
| Q |
122 |
aacctatgaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgtaaccattgttctaagcttccatttttcatgtaatcaaaaacta |
221 |
Q |
| |
|
|| |||||| ||| |||||||||| |||| | |||| |||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||| | |
|
|
| T |
10565163 |
aatctatgagcaaagtccaatgttgttgggggttctgcatttaaaatctcaggatgcaaccattgatctaagcttccatttttcatgtactcaaaaacca |
10565064 |
T |
|
| Q |
222 |
gagctttaaattcttcacctttgtaatctgtactagaacaacaggttaaaaccttaactaagtttcagtgtctaatgtttttgagtgcattacattcaac |
321 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||| ||||| ||| ||||||||||||||||||||||| |
|
|
| T |
10565063 |
gagctttaaattcttgacctttgtaatctgtacttgaacaacaggttaaaaccttaactaaatttcggtgtcgaatatttttgagtgcattacattcaac |
10564964 |
T |
|
| Q |
322 |
aatgaaactcttgctagctccattgttttggaggttgaagactttcacagcaacaacattaccttccgacacaagatttcctctgtacacagaaccgaaa |
421 |
Q |
| |
|
||||||||||||| |||||| || ||||||||||| | ||| || || |||||||||||| |||| ||||||||||||||| |||||||| ||| ||| |
|
|
| T |
10564963 |
aatgaaactcttgtgagctcccttcttttggaggttcaggacctttacggcaacaacattatcttctgacacaagatttcctttgtacacaagaccaaaa |
10564864 |
T |
|
| Q |
422 |
cctcctgatccaatcaagtttttatctgagaatccatcggttccttgatgtaaatcttggtatgaaactttagctagttgatcaattgttggtgaatcaa |
521 |
Q |
| |
|
| ||||||||| ||||||||| || |||||| |||||||||||||||||||| |||||||| ||||| |||| ||||||||||| ||||||||||||| |
|
|
| T |
10564863 |
cttcctgatcctatcaagtttctagttgagaacccatcggttccttgatgtaattcttggtacgaaaccttagatagttgatcaactgttggtgaatcac |
10564764 |
T |
|
| Q |
522 |
aagatggtttttggtttcnnnnnnncatccaggtgataattataatgaatgaaagtatgataagaaaagaaaccacactaactatcactgataccaacct |
621 |
Q |
| |
|
||||| | ||| | |||| ||||||| |||| |||| || ||||||||||||| |||||||||||||||||||| |||||||| | |||||| |
|
|
| T |
10564763 |
aagatcgctttggatttcttttcctcatccagtagatagttatgataaatgaaagtatgagaagaaaagaaaccacactaattatcactgccatcaacct |
10564664 |
T |
|
| Q |
622 |
gaaattatggtgtgttgcatgttttctacctttgatag |
659 |
Q |
| |
|
|| || | ||| |||||||||| ||||| ||||||| |
|
|
| T |
10564663 |
gatctttttctgttttgcatgtttcctacccttgatag |
10564626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 29 - 622
Target Start/End: Complemental strand, 10604981 - 10604388
Alignment:
| Q |
29 |
acattacttgcctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgtttaacctat |
128 |
Q |
| |
|
||||| |||| |||||||||||||||||| | |||||||||||||||||||| |||||||| ||||||||||||||||| | ||||||||| || || | |
|
|
| T |
10604981 |
acattgcttggctttagatcacaatgaatgactaattgctcacattcttgatgaagataatgcaatgcagaagcaacatcaaaaatgatgttaaatcttt |
10604882 |
T |
|
| Q |
129 |
gaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgtaaccattgttctaagcttccatttttcatgtaatcaaaaactagagcttt |
228 |
Q |
| |
|
|||||||||||| ||| ||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10604881 |
taccaaggtccaacgttgttggaggctctgcatttaaaatctcaggatgcaaccattgttctaagcttccatttttcatgtaatcaaaaactagagcttt |
10604782 |
T |
|
| Q |
229 |
aaattcttcacctttgtaatctgtactagaacaacaggttaaaaccttaactaagtttcagtgtctaatgtttttgagtgcattacattcaacaatgaaa |
328 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |||||||| | |||||| || | |||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
10604781 |
aaattcttgacctttgtaatctgtactagaacaacatgttaaaacttgaactaaattccggtgtcttatagttttgagtgcattacattcaacaatgaaa |
10604682 |
T |
|
| Q |
329 |
ctcttgctagctccattgttttggaggttgaagactttcacagcaacaacattaccttccgacacaagatttcctctgtacacagaaccgaaacctcctg |
428 |
Q |
| |
|
||||| ||||| || ||||||||||| | ||| || |||||||| |||||| |||| ||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
10604681 |
ttcttgtgtgctcccttcttttggaggttcaggacctttacagcaactacattatcttctgacacaagatttcctctgtacacagaaccaaaacttccta |
10604582 |
T |
|
| Q |
429 |
atccaatcaagtttttatctgagaatccatcggttccttgatgtaaatcttggtatgaaactttagctagttgatcaattgttggtgaatcaaaagatgg |
528 |
Q |
| |
|
|||||||||||||| |||| ||||| |||||||||||||| ||||| || ||||||||||| ||| ||||||||| ||||| |||||||||||||||||| |
|
|
| T |
10604581 |
atccaatcaagtttctatccgagaacccatcggttccttggtgtaagtcatggtatgaaaccttatctagttgatgaattgctggtgaatcaaaagatgg |
10604482 |
T |
|
| Q |
529 |
tttttggtttcnnnnnnncatccaggtgataattataatgaatgaaagtatgataagaaaagaaaccacactaactatcactgataccaacctg |
622 |
Q |
| |
|
|||||||||| || ||| |||| ||| || | ||||||||||| ||||||||| ||||||| ||||||||||| || ||||||| |
|
|
| T |
10604481 |
gttttggtttcttttcctcacccaatagatagctatgataactgaaagtatgaaaagaaaagacaccacaccaactatcactgctatcaacctg |
10604388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 22 - 630
Target Start/End: Original strand, 10716913 - 10717521
Alignment:
| Q |
22 |
aagaagaacattacttgcctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgttt |
121 |
Q |
| |
|
|||||| ||||| |||| ||| |||||||||||||| || ||||| ||||||||||| || |||||||||||||||| || |||||||| ||||||||| |
|
|
| T |
10716913 |
aagaaggacattgcttggcttaagatcacaatgaatgattaattgttcacattcttggtgaagataatgtaatgcagtggcgacatcgatcatgatgttt |
10717012 |
T |
|
| Q |
122 |
aacctatgaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgtaaccattgttctaagcttccatttttcatgtaatcaaaaacta |
221 |
Q |
| |
|
|| ||||||||||||||||||||| ||||||| |||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10717013 |
aatctatgaccaaggtccaatgttcttggatgatctgcatttaaaatctcaagatgcaaccattgttctaagcttccatttttcatgtaatcaaaaacta |
10717112 |
T |
|
| Q |
222 |
gagctttaaattcttcacctttgtaatctgtactagaacaacaggttaaaaccttaactaagtttcagtgtctaatgtttttgagtgcattacattcaac |
321 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||||||| ||||| | ||| |||| |||| |||||| || ||||| ||||||||||||||||| |
|
|
| T |
10717113 |
gagctttaaaagtttgacctttgtaatctgtactagaacaacatgttaatatcttcactagatttcggtgtctgatattttttagtgcattacattcaac |
10717212 |
T |
|
| Q |
322 |
aatgaaactcttgctagctccattgttttggaggttgaagactttcacagcaacaacattaccttccgacacaagatttcctctgtacacagaaccgaaa |
421 |
Q |
| |
|
||||||||||||| |||||| || |||| |||||| ||||| || || ||||||||||| |||| ||||||||||||||| ||||||||||||| ||| |
|
|
| T |
10717213 |
aatgaaactcttgtgagctcccttctttttgaggttcaagacctttacggcaacaacattgtcttctgacacaagatttcctttgtacacagaaccaaaa |
10717312 |
T |
|
| Q |
422 |
cctcctgatccaatcaagtttttatctgagaatccatcggttccttgatgtaaatcttggtatgaaactttagctagttgatcaattgttggtgaatcaa |
521 |
Q |
| |
|
| ||||||||||||||||||| | |||||||| |||||||||||| | ||||| ||||| |||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
10717313 |
cttcctgatccaatcaagtttctttctgagaacccatcggttcctcggtgtaagtcttgatatgaaaccttagctagttgatcaatagttggtgaatcaa |
10717412 |
T |
|
| Q |
522 |
aagatggtttttggtttcnnnnnnncatccaggtgataattataatgaatgaaagtatgataagaaaagaaaccacactaactatcactgataccaacct |
621 |
Q |
| |
|
| |||||||||||||||| ||||||| |||| |||| ||||||||||||| | |||| ||| |||||||| |||||||| || |||| | |
|
|
| T |
10717413 |
aggatggtttttggtttctcttcctcatccagcagatagaaataacaaatgaaagtatgagcaaaaaaaaaatcacactaaatatcactgctatcaactt |
10717512 |
T |
|
| Q |
622 |
gaaattatg |
630 |
Q |
| |
|
||||||||| |
|
|
| T |
10717513 |
gaaattatg |
10717521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 29 - 659
Target Start/End: Complemental strand, 10611939 - 10611309
Alignment:
| Q |
29 |
acattacttgcctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgtttaacctat |
128 |
Q |
| |
|
||||| |||| ||||| ||||||||||| | ||||||||||||||| | ||| |||||||||||||||||| ||||||| |||||||||||||| |||| |
|
|
| T |
10611939 |
acattgcttggctttatatcacaatgaaggaccaattgctcacattcattatgaagataatgtaatgcagaaccaacatccataatgatgtttaatctat |
10611840 |
T |
|
| Q |
129 |
gaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgtaaccattgttctaagcttccatttttcatgtaatcaaaaactagagcttt |
228 |
Q |
| |
|
||| |||||||||||| || ||||||| |||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10611839 |
gactgaggtccaatgttgctgtatgctcttcatttaaaaccttgggatgcaaccattgttctaagcttccatttttcatgtaatcaaaaactagggcttt |
10611740 |
T |
|
| Q |
229 |
aaattcttcacctttgtaatctgtactagaacaacaggttaaaaccttaactaagtttcagtgtctaatgtttttgagtgcattacattcaacaatgaaa |
328 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| ||||||| ||||||||| |||| ||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
10611739 |
aaattcttgacctttgtaatctgtactagaacaacatgttaaaatcttaactaaatttcggtgtctaataaattttagtgcattacattcaacaatgaaa |
10611640 |
T |
|
| Q |
329 |
ctcttgctagctccattgttttggaggttgaagactttcacagcaacaacattaccttccgacacaagatttcctctgtacacagaaccgaaacctcctg |
428 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| || | |||||||||||| |||| |||||||||||||||||||||||| ||| |||| ||||| |
|
|
| T |
10611639 |
ctcttgtgagctccattgttttggaggttgaagacctttatagcaacaacattgtcttctgacacaagatttcctctgtacacatcaccaaaacttcctg |
10611540 |
T |
|
| Q |
429 |
atccaatcaagtttttatctgagaatccatcggttccttgatgtaaatcttggtatgaaactttagctagttgatcaattgttggtgaatcaaaagatgg |
528 |
Q |
| |
|
|||| ||||||||| |||||||||| |||||||||||||| | ||| ||| || ||||||| |||||| ||||||| ||| ||||||||| |||||| |
|
|
| T |
10611539 |
atccgatcaagtttctatctgagaacccatcggttccttggtataagtctcggaatgaaaccttagcttcttgatcatttggtggtgaatcgaaagatct |
10611440 |
T |
|
| Q |
529 |
tttttggtttcnnnnnnncatccaggtgataattataatgaatgaaagtatgataagaaaagaaaccacactaactatcactgataccaacctgaaatta |
628 |
Q |
| |
|
|||||| ||| | |||| |||| ||||||| ||| ||| ||||| |||||||||||||| ||||||||||||| || || |||||| || |
|
|
| T |
10611439 |
tttttgatttattttccttacccagtagatagttataataaataaaaatatgagaagaaaagaaaccatgctaactatcactgctatcagcctgaatata |
10611340 |
T |
|
| Q |
629 |
tggtgtgttgcatgttttctacctttgatag |
659 |
Q |
| |
|
|||||| ||| ||||| ||||| ||||||| |
|
|
| T |
10611339 |
tggtgttttgggtgtttcctacccttgatag |
10611309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 22 - 645
Target Start/End: Original strand, 10763106 - 10763729
Alignment:
| Q |
22 |
aagaagaacattacttgcctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgttt |
121 |
Q |
| |
|
|||||| ||||| |||| ||||||||||||||||| | |||||||||||||||| |||| |||||||||||||||||||||||||| |||||||| || |
|
|
| T |
10763106 |
aagaaggacattgcttggctttagatcacaatgaaggaccaattgctcacattctcgatgaagataatgtaatgcagaagcaacatcaataatgatattc |
10763205 |
T |
|
| Q |
122 |
aacctatgaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgtaaccattgttctaagcttccatttttcatgtaatcaaaaacta |
221 |
Q |
| |
|
| || ||| |||| ||||||||| ||||| ||||| ||||||| || ||| || | |||| |||||||||||||||||||||||||||||||||| | |
|
|
| T |
10763206 |
agtctttgatcaagatccaatgttgttggagtctctgcatttaaattcctagggtgcagccatcgttctaagcttccatttttcatgtaatcaaaaacca |
10763305 |
T |
|
| Q |
222 |
gagctttaaattcttcacctttgtaatctgtactagaacaacaggttaaaaccttaactaagtttcagtgtctaatgtttttgagtgcattacattcaac |
321 |
Q |
| |
|
||||||||||||||| |||||| ||||| |||||||||||||| ||||||| ||||||||| || | |||| ||| ||||| ||||||||||||||||| |
|
|
| T |
10763306 |
gagctttaaattcttgacctttataatcagtactagaacaacatgttaaaatcttaactaaattccggtgttgaatattttttagtgcattacattcaac |
10763405 |
T |
|
| Q |
322 |
aatgaaactcttgctagctccattgttttggaggttgaagactttcacagcaacaacattaccttccgacacaagatttcctctgtacacagaaccgaaa |
421 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| | |||||||| ||| |||| |||||||||||||||||||||||| ||| || |
|
|
| T |
10763406 |
aatgaaactcttgtgagctccattgttttggaggttgaagacttttatagcaacaatattgtcttctgacacaagatttcctctgtacacatcaccagaa |
10763505 |
T |
|
| Q |
422 |
cctcctgatccaatcaagtttttatctgagaatccatcggttccttgatgtaaatcttggtatgaaactttagctagttgatcaattgttggtgaatcaa |
521 |
Q |
| |
|
| ||||||||| |||| ||||||||| ||||| ||||| |||||||| |||| |||||||||||||| ||| ||||||| ||||||||||||||||||| |
|
|
| T |
10763506 |
cttcctgatccgatcaggtttttatccgagaacccatctgttccttggagtaactcttggtatgaaaccttatctagttgctcaattgttggtgaatcaa |
10763605 |
T |
|
| Q |
522 |
aagatggtttttggtttcnnnnnnncatccaggtgataattataatgaatgaaagtatgataagaaaagaaaccacactaactatcactgataccaacct |
621 |
Q |
| |
|
||||| | ||| | |||| || ||| |||| |||| || ||||||||||||| ||||||||||||||| ||||||||||||| || |||||| |
|
|
| T |
10763606 |
aagatcgctttggatttcttttccttatgcagtagatagttatgataaatgaaagtatgagaagaaaagaaaccacgctaactatcactgctatcaacct |
10763705 |
T |
|
| Q |
622 |
gaaattatggtgtgttgcatgttt |
645 |
Q |
| |
|
||| || || || |||||||||| |
|
|
| T |
10763706 |
gaacttgtgtcgttttgcatgttt |
10763729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 22 - 659
Target Start/End: Original strand, 10746988 - 10747625
Alignment:
| Q |
22 |
aagaagaacattacttgcctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgttt |
121 |
Q |
| |
|
|||||| ||||| |||| ||| |||||||| ||||| | ||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
10746988 |
aagaaggacattgcttggcttgagatcacagtgaatgactaattgctcacattcttggtgaagataatgtaatgttgaagcaacatcgataatgatgttt |
10747087 |
T |
|
| Q |
122 |
aacctatgaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgtaaccattgttctaagcttccatttttcatgtaatcaaaaacta |
221 |
Q |
| |
|
|| || || |||||||| || ||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
10747088 |
aatctgtggccaaggtctaacgtttttggatgctcttcatttaaaaactcaggatgcaaccattgttctaagcttccattttttatgtaataaaaaacta |
10747187 |
T |
|
| Q |
222 |
gagctttaaattcttcacctttgtaatctgtactagaacaacaggttaaaaccttaactaagtttcagtgtctaatgtttttgagtgcattacattcaac |
321 |
Q |
| |
|
|||||||||| || | | ||||||||||| ||||||||||||| ||||||| ||||||||| |||| |||||||||||| |||||| ||||||||||||| |
|
|
| T |
10747188 |
gagctttaaactcctgaactttgtaatctatactagaacaacacgttaaaatcttaactaaatttcggtgtctaatgttcttgagtacattacattcaac |
10747287 |
T |
|
| Q |
322 |
aatgaaactcttgctagctccattgttttggaggttgaagactttcacagcaacaacattaccttccgacacaagatttcctctgtacacagaaccgaaa |
421 |
Q |
| |
|
||||||||||||| |||||| || ||||| ||||| | |||||| || |||||| ||||| ||| ||||||||||||||| ||||||| ||||| ||| |
|
|
| T |
10747288 |
aatgaaactcttgtgagctcccttcttttgaaggtttaggacttttacggcaacagcattattttcggacacaagatttcctttgtacactgaaccaaaa |
10747387 |
T |
|
| Q |
422 |
cctcctgatccaatcaagtttttatctgagaatccatcggttccttgatgtaaatcttggtatgaaactttagctagttgatcaattgttggtgaatcaa |
521 |
Q |
| |
|
| ||||||||| ||||||||| || |||||| || | ||||| |||||||| ||||||||||||||| ||||||||||||||||||| |||||||| | |
|
|
| T |
10747388 |
cttcctgatccgatcaagtttctacttgagaaaccgtttgttccatgatgtaagtcttggtatgaaactgtagctagttgatcaattgtaggtgaatcga |
10747487 |
T |
|
| Q |
522 |
aagatggtttttggtttcnnnnnnncatccaggtgataattataatgaatgaaagtatgataagaaaagaaaccacactaactatcactgataccaacct |
621 |
Q |
| |
|
|||| ||| | |||| | ||| |||| ||||||| ||||||||||||| ||||||| |||| |||||||||||||||| |||||| | |
|
|
| T |
10747488 |
tagatcttttgttatttctttttcttacccaatagatagttataataaatgaaagtatgagaagaaaaaaaacaacactaactatcactgcgaccaacat |
10747587 |
T |
|
| Q |
622 |
gaaattatggtgtgttgcatgttttctacctttgatag |
659 |
Q |
| |
|
||| ||||||||| ||| | ||| ||||| ||||||| |
|
|
| T |
10747588 |
gaatttatggtgttttgtgtctttcctacccttgatag |
10747625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 35 - 632
Target Start/End: Complemental strand, 10581226 - 10580617
Alignment:
| Q |
35 |
cttgcctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgtttaacctatgaccaa |
134 |
Q |
| |
|
|||| ||||||||||||| ||| | |||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
10581226 |
cttggctttagatcacaacgaaggaccaattgctcacattctcgatgaagataatgtaatgcagaagcaacatccataatgatgtttaatctatgaccaa |
10581127 |
T |
|
| Q |
135 |
ggtccaatgtttttggatgctctgaatttaaaatctcaggatgtaaccattgttctaagcttccatttttcatgtaatcaaaaactagagctttaaattc |
234 |
Q |
| |
|
||| ||||||| || || | |||| | ||||| ||| |||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
10581126 |
ggttcaatgttgttagaggttctgcacttaaa-tctgaggatgcaaccattgttctaagcttccatttttcatgtaataaaaaactaaagctttaaattc |
10581028 |
T |
|
| Q |
235 |
ttcacctttgtaatctgtactagaacaacaggttaaaaccttaactaagtttcagtgtctaatgtttttgagtgcattacattcaacaatgaaactcttg |
334 |
Q |
| |
|
|| |||||||||| ||||||||||||||| |||| |||||| ||||| ||| ||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
10581027 |
ttggcctttgtaatttgtactagaacaacatgttagaaccttgactaaattttggtgtctaatatttttgagtgcattacattcaacaataaaactcttg |
10580928 |
T |
|
| Q |
335 |
ctagctccattgttttggaggttgaagactttcacagcaacaac-------------attaccttccgacacaagatttcctctgtacacagaaccgaaa |
421 |
Q |
| |
|
|||||| || ||||||||||| ||||| || || |||||||| |||| |||| ||||||||||||||| ||||||| ||||| ||| |
|
|
| T |
10580927 |
tgagctcctttcttttggaggttcaagacctttactgcaacaacattatgcaacaacattatcttctgacacaagatttcctttgtacacggaaccaaaa |
10580828 |
T |
|
| Q |
422 |
cctcctgatccaatcaagtttttatctgagaatccatcggttccttgatgtaaatcttggtatgaaactttagctagttgatcaattgttggtgaatcaa |
521 |
Q |
| |
|
| |||||| || |||| |||| |||| ||||| ||||| ||||||| ||||| |||| ||||||||| ||| |||||||||| ||| ||| ||||| | |
|
|
| T |
10580827 |
cttcctgacccgatcatgtttctatccgagaacccatcagttcctttgtgtaagtctttgtatgaaaccttatctagttgatctattattgaagaatcta |
10580728 |
T |
|
| Q |
522 |
aagatggtttttggtttcnnnnnnncatccaggtgataattataatgaatgaaagtatgataagaaaagaaaccacactaactatcactgataccaacct |
621 |
Q |
| |
|
| |||| ||||| ||| | ||||| |||| |||||| ||||||||||||| |||||||||||||||||| ||||||| | || |||| | |
|
|
| T |
10580727 |
atgatgattttttgttccttttacttatccaatagatagctataataaatgaaagtatgagaagaaaagaaaccacactgactatcatagctatcaactt |
10580628 |
T |
|
| Q |
622 |
gaaattatggt |
632 |
Q |
| |
|
||||||||||| |
|
|
| T |
10580627 |
gaaattatggt |
10580617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 29 - 539
Target Start/End: Original strand, 19605845 - 19606355
Alignment:
| Q |
29 |
acattacttgcctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgtttaacctat |
128 |
Q |
| |
|
||||| |||| ||||||||||||||||| | ||||||||||||||| ||||| || |||||||||||||||| |||||||| || ||| ||||| || | |
|
|
| T |
19605845 |
acattgcttggctttagatcacaatgaaggaccaattgctcacattcatgatgaaggtaatgtaatgcagaagaaacatcgacaaggatatttaatcttt |
19605944 |
T |
|
| Q |
129 |
gaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgtaaccattgttctaagcttccatttttcatgtaatcaaaaactagagcttt |
228 |
Q |
| |
|
| ||| | ||||||| ||||||| |||| ||| | || | ||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
19605945 |
gctcaaacttcaatgttcttggatgatctgcattcattgtcccgggatgcaaccattgttctaagcttccatttctcatgtactcaaaaactagagcttt |
19606044 |
T |
|
| Q |
229 |
aaattcttcacctttgtaatctgtactagaacaacaggttaaaaccttaactaagtttcagtgtctaatgtttttgagtgcattacattcaacaatgaaa |
328 |
Q |
| |
|
|||||| |||||||| ||| ||||||||||||| ||||||| ||||||||| |||| |||||||| |||||||| |||||||||||| ||| ||| |
|
|
| T |
19606045 |
gaattctagacctttgttatcaatactagaacaacaagttaaaatcttaactaaatttcgatgtctaatatttttgagagcattacattcagtaataaaa |
19606144 |
T |
|
| Q |
329 |
ctcttgctagctccattgttttggaggttgaagactttcacagcaacaacattaccttccgacacaagatttcctctgtacacagaaccgaaacctcctg |
428 |
Q |
| |
|
|||||| |||||| || |||| ||||| | ||| || ||||||| ||| ||| |||| |||| |||||||||| | ||||| |||||||| ||||||| |
|
|
| T |
19606145 |
ctcttgtgagctcccttcttttcaaggttcaggaccttaacagcaataactttatcttctgacataagatttcctttatacacggaaccgaagcctcctg |
19606244 |
T |
|
| Q |
429 |
atccaatcaagtttttatctgagaatccatcggttccttgatgtaaatcttggtatgaaactttagctagttgatcaattgttggtgaatcaaaagatgg |
528 |
Q |
| |
|
|||||||||||||| |||| ||||| ||||||||| | |||| ||| |||||||| ||||| ||| || ||| ||||||||||||||||| ||||||| |
|
|
| T |
19606245 |
atccaatcaagtttctatccgagaacccatcggttgcctgatataagtcttggtaggaaaccataggtaattggtcaattgttggtgaatctgaagatgg |
19606344 |
T |
|
| Q |
529 |
tttttggtttc |
539 |
Q |
| |
|
||||| ||||| |
|
|
| T |
19606345 |
ttttttgtttc |
19606355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 29 - 531
Target Start/End: Complemental strand, 10559131 - 10558629
Alignment:
| Q |
29 |
acattacttgcctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgtttaacctat |
128 |
Q |
| |
|
||||| |||| ||||||||||||||||| | |||||||||||||||| |||| |||||||||||||||||||||||||| |||||||| || | || | |
|
|
| T |
10559131 |
acattgcttggctttagatcacaatgaaggaccaattgctcacattctcgatgaagataatgtaatgcagaagcaacatcaataatgatattcagtcttt |
10559032 |
T |
|
| Q |
129 |
gaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgtaaccattgttctaagcttccatttttcatgtaatcaaaaactagagcttt |
228 |
Q |
| |
|
|| ||| ||||||| | |||| |||||| ||| | ||| | ||| ||||| | |||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
10559031 |
gattaagatccaatgctcttggttgctctacattcatcatccttgaatgcaaccagttttctaagcttccatttttcatgtattcaaaaactagagcttt |
10558932 |
T |
|
| Q |
229 |
aaattcttcacctttgtaatctgtactagaacaacaggttaaaaccttaactaagtttcagtgtctaatgtttttgagtgcattacattcaacaatgaaa |
328 |
Q |
| |
|
||||| | |||||||||||| ||||||||||||| ||||||| |||||| | |||| |||||||| ||||| |||||||||||||| ||| ||| |
|
|
| T |
10558931 |
gaattcctgacctttgtaatcaatactagaacaacaagttaaaatcttaaccagatttcgatgtctaatattttttagtgcattacattcggtaataaaa |
10558832 |
T |
|
| Q |
329 |
ctcttgctagctccattgttttggaggttgaagactttcacagcaacaacattaccttccgacacaagatttcctctgtacacagaaccgaaacctcctg |
428 |
Q |
| |
|
|||||| ||||||||| |||| |||| | ||| |||||||||| ||| ||| |||| |||| |||||||||| | ||||| ||||| || ||||||| |
|
|
| T |
10558831 |
ctcttgtgagctccattcttttcaaggtccaggaccttcacagcaataactttatcttctgacataagatttcctttatacaccgaaccaaagcctcctg |
10558732 |
T |
|
| Q |
429 |
atccaatcaagtttttatctgagaatccatcggttccttgatgtaaatcttggtatgaaactttagctagttgatcaattgttggtgaatcaaaagatgg |
528 |
Q |
| |
|
|||||||||||||| || |||||| ||||| ||| | |||| || |||||||| ||||| |||| ||||| |||||| |||||||||| ||||||| |
|
|
| T |
10558731 |
atccaatcaagtttctagatgagaagccatcagttgcctgatacaagtcttggtaagaaaccatagcaagttggtcaattattggtgaatctgaagatgg |
10558632 |
T |
|
| Q |
529 |
ttt |
531 |
Q |
| |
|
||| |
|
|
| T |
10558631 |
ttt |
10558629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 22 - 526
Target Start/End: Original strand, 10588403 - 10588907
Alignment:
| Q |
22 |
aagaagaacattacttgcctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgttt |
121 |
Q |
| |
|
|||||| || || |||| ||||| ||||||||||| | || ||||||||||| ||||| |||||||||| ||||||||||| ||||||| |||| ||| |
|
|
| T |
10588403 |
aagaaggacgttgcttggctttatatcacaatgaaggaccacctgctcacattcatgatgaagataatgtagtgcagaagcaatatcgatagtgatattt |
10588502 |
T |
|
| Q |
122 |
aacctatgaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgtaaccattgttctaagcttccatttttcatgtaatcaaaaacta |
221 |
Q |
| |
|
|| |||||| |||||||||| ||| |||||||||||||||| | | || ||||| | |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
10588503 |
aatctatgaacaaggtccaacgttcttggatgctctgaattcacattccatggatgaagccattgttctaaacttccatttttcatgtaatcaaaaacta |
10588602 |
T |
|
| Q |
222 |
gagctttaaattcttcacctttgtaatctgtactagaacaacaggttaaaaccttaactaagtttcagtgtctaatgtttttgagtgcattacattcaac |
321 |
Q |
| |
|
|||||||||||||| |||||| ||||| |||| ||||||||| ||||||| ||| | || |||| ||||||| || ||||||||||||||||| | |
|
|
| T |
10588603 |
aagctttaaattcttgacctttataatcagtaccagaacaacatgttaaaatcttggccaaatttcgatgtctaacattcttgagtgcattacattcggc |
10588702 |
T |
|
| Q |
322 |
aatgaaactcttgctagctccattgttttggaggttgaagactttcacagcaacaacattaccttccgacacaagatttcctctgtacacagaaccgaaa |
421 |
Q |
| |
|
||| |||||||| |||||| || |||| ||||| | || || | ||||||| ||| ||| || || ||| ||||| |||| || |||| ||| |
|
|
| T |
10588703 |
aataaaactcttatcagctcccttctttttaaggttcagaaccttgatagcaacagatttatcttgtgatacgagaattcctttgtatacggaacaaaaa |
10588802 |
T |
|
| Q |
422 |
cctcctgatccaatcaagtttttatctgagaatccatcggttccttgatgtaaatcttggtatgaaactttagctagttgatcaattgttggtgaatcaa |
521 |
Q |
| |
|
| ||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||| ||| |||| || ||| |||| |||| |||| |
|
|
| T |
10588803 |
cttcctgatccaatcaagtttccatctgagaatccatcagttccttgatgtagttcttggtatgaaaccttaactagctggtcagttgtaggtgtatcag |
10588902 |
T |
|
| Q |
522 |
aagat |
526 |
Q |
| |
|
||||| |
|
|
| T |
10588903 |
aagat |
10588907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 22 - 499
Target Start/End: Complemental strand, 7193241 - 7192764
Alignment:
| Q |
22 |
aagaagaacattacttgcctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgttt |
121 |
Q |
| |
|
|||||| ||||| |||| |||||||||||||||||| ||| ||||||||||||| |||| || ||||||||| || | |||| ||| | | ||| || |
|
|
| T |
7193241 |
aagaaggacattgcttggctttagatcacaatgaatgatcgattgctcacattcaagatgaaggtaatgtaatacaaaggcaatatcaacagcgatattc |
7193142 |
T |
|
| Q |
122 |
aacctatgaccaaggtccaatgtttttggatgctctgaatttaaa-atctcaggatgtaaccattgttctaagcttccatttttcatgtaatcaaaaact |
220 |
Q |
| |
|
|| || ||| |||||||||| ||| || ||| |||| ||| | |||| |||||||| |||||||||||||||||| || |||||||| ||||| ||| |
|
|
| T |
7193141 |
aatctttgatcaaggtccaacgttctttgattctctacattcactgatct-aggatgtagccattgttctaagcttccgttgttcatgtattcaaagact |
7193043 |
T |
|
| Q |
221 |
agagctttaaattcttcacctttgtaatctgtactagaacaacaggttaaaaccttaactaagtttcagtgtctaatgtttttgagtgcattacattcaa |
320 |
Q |
| |
|
| |||||||||||||| |||||||||||||||||| |||||||| || |||| |||||| || |||| |||||||| ||||| ||||||||||||||| |
|
|
| T |
7193042 |
aaagctttaaattcttgacctttgtaatctgtactggaacaacatgtcaaaatcttaaccaaatttcgatgtctaatattttttagtgcattacattcag |
7192943 |
T |
|
| Q |
321 |
caatgaaactcttgctagctccattgttttggaggttgaagactttcacagcaacaacattaccttccgacacaagatttcctctgtacacagaaccgaa |
420 |
Q |
| |
|
|||||||||||||| |||||| || ||||| ||||| | ||| ||||| |||||||| ||| |||| || ||||||||||| ||||||||||||| || |
|
|
| T |
7192942 |
caatgaaactcttgtgagctcccttcttttgaaggttcatgaccttcacggcaacaactttatcttctgattcaagatttcctttgtacacagaaccaaa |
7192843 |
T |
|
| Q |
421 |
acctcctgatccaatcaagtttttatctgagaatccatcggttccttgatgtaaatcttggtatgaaactttagctagt |
499 |
Q |
| |
|
| ||||||||||| |||||| || | || || || || ||||| || || | || ||||||||||||||||||||| |
|
|
| T |
7192842 |
gcttcctgatccaactaagtttctagcagaaaacccgtcagttccctggtgaaggtcctggtatgaaactttagctagt |
7192764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 46 - 494
Target Start/End: Original strand, 9836325 - 9836773
Alignment:
| Q |
46 |
atcacaatgaataatcaattgctcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtt |
145 |
Q |
| |
|
|||||||||||| | || |||||||||||| ||| |||||||||||||||||||||| ||| || ||| |||| || ||| |||||| ||||||| |
|
|
| T |
9836325 |
atcacaatgaatgaccacttgctcacattcacaatgaagataatgtaatgcagaagcaatatcaatggagatatttagtctttgaacaaggttcaatgtt |
9836424 |
T |
|
| Q |
146 |
tttggatgctctgaatttaaaatctcaggatgtaaccattgttctaagcttccatttttcatgtaatcaaaaactagagctttaaattcttcacctttgt |
245 |
Q |
| |
|
| |||| |||||||| | || |||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| | |
|
|
| T |
9836425 |
ctaggatactctgaatccactgtccagggataaagccattgttctaagcttccatttttcatgtaatcaaaaactaaagctttaaattctccacctttat |
9836524 |
T |
|
| Q |
246 |
aatctgtactagaacaacaggttaaaaccttaactaagtttcagtgtctaatgtttttgagtgcattacattcaacaatgaaactcttgctagctccatt |
345 |
Q |
| |
|
|||| ||||||||||||| |||| |||||| || || |||| |||||||| ||||||||||||||||||||| |||| |||||||| |||||| || |
|
|
| T |
9836525 |
aatcaatactagaacaacatgttataaccttgaccaaatttcgatgtctaatatttttgagtgcattacattcagcaataaaactcttatgagctccctt |
9836624 |
T |
|
| Q |
346 |
gttttggaggttgaagactttcacagcaacaacattaccttccgacacaagatttcctctgtacacagaaccgaaacctcctgatccaatcaagttttta |
445 |
Q |
| |
|
|||| |||||| | || || | ||||||||| ||| ||| || |||| ||||||| |||| || | ||| |||| ||||||||||||||| ||| || |
|
|
| T |
9836625 |
ctttttgaggttcagaacctttatagcaacaactttatcttgtgatacaatatttcctttgtatacggtaccaaaacttcctgatccaatcaaatttcta |
9836724 |
T |
|
| Q |
446 |
tctgagaatccatcggttccttgatgtaaatcttggtatgaaactttag |
494 |
Q |
| |
|
|||||||| |||| ||||| ||||||| |||||||||||||| |||| |
|
|
| T |
9836725 |
tctgagaactcatcagttccatgatgtagttcttggtatgaaaccttag |
9836773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 22 - 489
Target Start/End: Original strand, 10652175 - 10652642
Alignment:
| Q |
22 |
aagaagaacattacttgcctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgttt |
121 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||| | | |||||||||||| ||||| || ||||||||| ||||||||| || | |||||| || |
|
|
| T |
10652175 |
aagaaggacattacttggctttagatcacaatgaatgaccgcttgctcacattcatgatgaaggtaatgtaatacagaagcaatgtcaacaatgatattc |
10652274 |
T |
|
| Q |
122 |
aacctatgaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgtaaccattgttctaagcttccatttttcatgtaatcaaaaacta |
221 |
Q |
| |
|
| | ||| |||||||||| || || || | ||| ||| | || | ||||||| ||||||||||| | |||| || |||||||| ||||| |||| |
|
|
| T |
10652275 |
agtcgttgatcaaggtccaacattctttgaatccctgcattcattatacctggatgtagccattgttctaggtttccgttgttcatgtattcaaacacta |
10652374 |
T |
|
| Q |
222 |
gagctttaaattcttcacctttgtaatctgtactagaacaacaggttaaaaccttaactaagtttcagtgtctaatgtttttgagtgcattacattcaac |
321 |
Q |
| |
|
||| ||||| |||| |||||||||||| ||||| |||||||| || ||||||||||| || |||| || || || ||||| ||||||||||||||||| |
|
|
| T |
10652375 |
aagccttaaactcttgacctttgtaatcggtactcgaacaacatgtcaaaaccttaaccaaatttctatgcctcatattttttagtgcattacattcaac |
10652474 |
T |
|
| Q |
322 |
aatgaaactcttgctagctccattgttttggaggttgaagactttcacagcaacaacattaccttccgacacaagatttcctctgtacacagaaccgaaa |
421 |
Q |
| |
|
|| ||| |||||| || ||| || ||||| ||||| | ||| || | |||||||| ||| |||| || ||||||||||| ||||||||||||| ||| |
|
|
| T |
10652475 |
aacgaagctcttgtgagatccctttttttgaaggttcaggacctttatggcaacaactttatcttctgatgcaagatttcctttgtacacagaaccaaaa |
10652574 |
T |
|
| Q |
422 |
cctcctgatccaatcaagtttttatctgagaatccatcggttccttgatgtaaatcttggtatgaaac |
489 |
Q |
| |
|
| |||| |||||| || |||| || | || |||||||| |||||||| || | |||| ||||||||| |
|
|
| T |
10652575 |
cttcctaatccaaccaggtttctagcagaaaatccatcagttccttggtgaaggtctttgtatgaaac |
10652642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 173 - 490
Target Start/End: Original strand, 10660209 - 10660526
Alignment:
| Q |
173 |
ggatgtaaccattgttctaagcttccatttttcatgtaatcaaaaactagagctttaaattcttcacctttgtaatctgtactagaacaacaggttaaaa |
272 |
Q |
| |
|
||||||| ||||||||||| ||||||||| |||||||| ||||| |||| ||| ||||| |||| |||||||||||||||||| |||||||| || |||| |
|
|
| T |
10660209 |
ggatgtagccattgttctaggcttccattgttcatgtattcaaacactaaagccttaaactcttgacctttgtaatctgtacttgaacaacatgtcaaaa |
10660308 |
T |
|
| Q |
273 |
ccttaactaagtttcagtgtctaatgtttttgagtgcattacattcaacaatgaaactcttgctagctccattgttttggaggttgaagactttcacagc |
372 |
Q |
| |
|
|||| || || |||| || || || ||||| ||||||||||||||||||||||| |||||| |||||| || ||||| ||||| | || || | || |
|
|
| T |
10660309 |
ccttgaccaaatttctatgcctcatattttttagtgcattacattcaacaatgaagctcttgtgagctcccttattttgaaggttcagaacctttatggc |
10660408 |
T |
|
| Q |
373 |
aacaacattaccttccgacacaagatttcctctgtacacagaaccgaaacctcctgatccaatcaagtttttatctgagaatccatcggttccttgatgt |
472 |
Q |
| |
|
||||| ||| |||| || ||||||||||| |||| |||||||| ||||||||| |||||| | |||| || | || |||||||| |||||||| || |
|
|
| T |
10660409 |
aacaaatttatcttctgatgcaagatttcctttgtagacagaaccaaaacctcctaatccaacaaggtttctagcagaaaatccatcagttccttggtga |
10660508 |
T |
|
| Q |
473 |
aaatcttggtatgaaact |
490 |
Q |
| |
|
| ||||| ||||||||| |
|
|
| T |
10660509 |
aggtcttgatatgaaact |
10660526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 98 - 318
Target Start/End: Complemental strand, 9825261 - 9825040
Alignment:
| Q |
98 |
gaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgtaaccattgttctaagcttc |
197 |
Q |
| |
|
||||||||||| |||||||| || || || ||| |||| ||||||||| | ||||||||| ||| ||| |||| ||||||||||||||||||| |
|
|
| T |
9825261 |
gaagcaacatcaataatgatattcaatctttgatcaagatccaatgttctaggatgctctacattctctatccttggattcaaccattgttctaagcttc |
9825162 |
T |
|
| Q |
198 |
c-atttttcatgtaatcaaaaactagagctttaaattcttcacctttgtaatctgtactagaacaacaggttaaaaccttaactaagtttcagtgtctaa |
296 |
Q |
| |
|
| ||||| |||||| ||||||||||||||||| ||||||| ||||||||||| |||||||| |||| ||||||| |||||| || |||| ||||||| |
|
|
| T |
9825161 |
ccattttgcatgtactcaaaaactagagctttgaattcttgccctttgtaatcgatactagaaaaacatgttaaaatcttaaccaaatttcgatgtctaa |
9825062 |
T |
|
| Q |
297 |
tgtttttgagtgcattacattc |
318 |
Q |
| |
|
| ||||||||| |||||||||| |
|
|
| T |
9825061 |
tatttttgagttcattacattc |
9825040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 173 - 334
Target Start/End: Complemental strand, 10550869 - 10550708
Alignment:
| Q |
173 |
ggatgtaaccattgttctaagcttccatttttcatgtaatcaaaaactagagctttaaattcttcacctttgtaatctgtactagaacaacaggttaaaa |
272 |
Q |
| |
|
||||| ||||| | ||||||| |||||||| ||||||| ||||| || ||||||||||| || |||||||||||||| || |||||||| || |||| |
|
|
| T |
10550869 |
ggatgcaaccaattttctaagtttccatttctcatgtactcaaatacaagagctttaaactcacttcctttgtaatctgtgctggaacaacaagtcaaaa |
10550770 |
T |
|
| Q |
273 |
ccttaactaagtttcagtgtctaatgtttttgagtgcattacattcaacaatgaaactcttg |
334 |
Q |
| |
|
||||||| |||| ||| ||||| ||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
10550769 |
ttttaactagatttctgtgcctaatattttttagtgcattacattcagcaatgaaactcttg |
10550708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 181 - 318
Target Start/End: Original strand, 9850832 - 9850969
Alignment:
| Q |
181 |
ccattgttctaagcttccatttttcatgtaatcaaaaactagagc-tttaaattcttcacctttgtaatctgtactagaacaacaggttaaaaccttaac |
279 |
Q |
| |
|
|||||||||||||||||||||| ||||||| | |||||||||||| ||| ||||| | ||||||||||| ||||||||||| | ||||||| |||||| |
|
|
| T |
9850832 |
ccattgttctaagcttccatttatcatgtactaaaaaactagagcttttgaattcatgccctttgtaatcgatactagaacaagaagttaaaatcttaac |
9850931 |
T |
|
| Q |
280 |
taagtttcagtgtctaatgtttttgagtgcattacattc |
318 |
Q |
| |
|
|| |||| |||||||| ||||||| ||||||||||| |
|
|
| T |
9850932 |
caaatttcgatgtctaat-attttgagggcattacattc |
9850969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 10660058 - 10660130
Alignment:
| Q |
22 |
aagaagaacattacttgcctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaat |
94 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||| | | |||||||||||| ||||| || ||||||||| |
|
|
| T |
10660058 |
aagaaggacattacttggctttagatcacaatgaatgaccgcttgctcacattcgtgatgaaggtaatgtaat |
10660130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 334
Target Start/End: Original strand, 10745864 - 10745897
Alignment:
| Q |
301 |
tttgagtgcattacattcaacaatgaaactcttg |
334 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |
|
|
| T |
10745864 |
tttgagtgtattacattcaacaatgaaactcttg |
10745897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 297; Significance: 1e-166; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 22 - 659
Target Start/End: Original strand, 17923376 - 17924013
Alignment:
| Q |
22 |
aagaagaacattacttgcctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgttt |
121 |
Q |
| |
|
|||||| ||||| |||| |||||||||||||||| || || |||||||||||| |||| || ||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
17923376 |
aagaaggacattgcttggttttagatcacaatgaaggattaactgctcacattctcgatgaaggtaatgcaatgcagaagcaacatcgatgatgatgttt |
17923475 |
T |
|
| Q |
122 |
aacctatgaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgtaaccattgttctaagcttccatttttcatgtaatcaaaaacta |
221 |
Q |
| |
|
|| ||||||||||||| ||||||| ||||| | | || ||| ||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
17923476 |
aatctatgaccaaggttcaatgttgttggaggatttgcattcaaagtctcaggatgtaaccactgttctaagcttccatttttcatgtattcaaaaacta |
17923575 |
T |
|
| Q |
222 |
gagctttaaattcttcacctttgtaatctgtactagaacaacaggttaaaaccttaactaagtttcagtgtctaatgtttttgagtgcattacattcaac |
321 |
Q |
| |
|
||||||||||||||| ||||||||||| ||| ||||||||||| |||||||||||||| || |||| ||||||||| ||||||||||| ||||||||||| |
|
|
| T |
17923576 |
gagctttaaattcttgacctttgtaatttgtgctagaacaacatgttaaaaccttaaccaaatttcggtgtctaatatttttgagtgcgttacattcaac |
17923675 |
T |
|
| Q |
322 |
aatgaaactcttgctagctccattgttttggaggttgaagactttcacagcaacaacattaccttccgacacaagatttcctctgtacacagaaccgaaa |
421 |
Q |
| |
|
|| |||||||||| |||||| || || |||||||| |||||||| || |||||||||||| |||| || |||| |||||||||||| || ||||| ||| |
|
|
| T |
17923676 |
aacgaaactcttgtgagctccctttttatggaggttcaagactttaactgcaacaacattatcttctgaaacaatatttcctctgtatacggaaccaaaa |
17923775 |
T |
|
| Q |
422 |
cctcctgatccaatcaagtttttatctgagaatccatcggttccttgatgtaaatcttggtatgaaactttagctagttgatcaattgttggtgaatcaa |
521 |
Q |
| |
|
| ||||||||| |||| |||| ||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
17923776 |
cttcctgatccgatcatgtttctatctgagaatccatcggttcctacgtgtaattcttggtatgaaaccttagctagttgatcaattgttggtgaatcaa |
17923875 |
T |
|
| Q |
522 |
aagatggtttttggtttcnnnnnnncatccaggtgataattataatgaatgaaagtatgataagaaaagaaaccacactaactatcactgataccaacct |
621 |
Q |
| |
|
||||| ||||| |||| |||| | |||| | || || ||||||||||||| || |||||||||||||||||||||||||| || |||||| |
|
|
| T |
17923876 |
aagatctcttttgatttctcttcctcatcatgtagatagtgatgataaatgaaagtatgagaataaaagaaaccacactaactatcactgctatcaacct |
17923975 |
T |
|
| Q |
622 |
gaaattatggtgtgttgcatgttttctacctttgatag |
659 |
Q |
| |
|
||| || || ||| |||||||||| ||||| ||||||| |
|
|
| T |
17923976 |
gaacttgtgttgttttgcatgtttcctacccttgatag |
17924013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 285; Significance: 1e-159; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 22 - 659
Target Start/End: Complemental strand, 12948880 - 12948243
Alignment:
| Q |
22 |
aagaagaacattacttgcctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgttt |
121 |
Q |
| |
|
|||||| ||||| |||| |||||||||||||||| | ||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12948880 |
aagaaggacattgcttggttttagatcacaatgaaggactaattgctcacattatcgatgaagataatgtaatgcagaagcaacatcgataatgatgttt |
12948781 |
T |
|
| Q |
122 |
aacctatgaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgtaaccattgttctaagcttccatttttcatgtaatcaaaaacta |
221 |
Q |
| |
|
|| ||| ||| ||||| ||||||| ||||| | | || ||| ||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
12948780 |
aatctacgacgaaggttcaatgttgttggaggatttgcattcaaagtctcaggatgtaaccactgttctaagcttccatttttcatgtattcaaaaacta |
12948681 |
T |
|
| Q |
222 |
gagctttaaattcttcacctttgtaatctgtactagaacaacaggttaaaaccttaactaagtttcagtgtctaatgtttttgagtgcattacattcaac |
321 |
Q |
| |
|
||||||||||||||| ||||||| || ||| ||||||||||| |||||||||||||| || |||| ||||||||| ||||| ||||||||||||||||| |
|
|
| T |
12948680 |
gagctttaaattcttggcctttgttatttgtgctagaacaacatgttaaaaccttaaccaaatttcggtgtctaatattttttagtgcattacattcaac |
12948581 |
T |
|
| Q |
322 |
aatgaaactcttgctagctccattgttttggaggttgaagactttcacagcaacaacattaccttccgacacaagatttcctctgtacacagaaccgaaa |
421 |
Q |
| |
|
||||||||||||| |||||| || || |||||||| |||||||| || |||||||||||| |||| || |||| |||||||||||| || ||||| ||| |
|
|
| T |
12948580 |
aatgaaactcttgtgagctccctttttctggaggttcaagacttttactgcaacaacattatcttctgaaacaatatttcctctgtatacggaaccaaaa |
12948481 |
T |
|
| Q |
422 |
cctcctgatccaatcaagtttttatctgagaatccatcggttccttgatgtaaatcttggtatgaaactttagctagttgatcaattgttggtgaatcaa |
521 |
Q |
| |
|
| ||||||||| ||||||||| ||||||||||||||| |||||| |||||| |||||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
12948480 |
cttcctgatccgatcaagtttctatctgagaatccatgggttccaacatgtaattcttggtatgaaaccttagctagttgatcaattgtaggtgaatcaa |
12948381 |
T |
|
| Q |
522 |
aagatggtttttggtttcnnnnnnncatccaggtgataattataatgaatgaaagtatgataagaaaagaaaccacactaactatcactgataccaacct |
621 |
Q |
| |
|
||||| ||||| |||| |||| | |||| |||| || ||||||||||||| || |||||||||||||||||||||| ||| || |||||| |
|
|
| T |
12948380 |
aagatctcttttgatttcttttcctcatcatgtagatagttatgataaatgaaagtatgagaataaaagaaaccacactaactatccctgctatcaacct |
12948281 |
T |
|
| Q |
622 |
gaaattatggtgtgttgcatgttttctacctttgatag |
659 |
Q |
| |
|
||| || || || |||||||||| ||||| ||||||| |
|
|
| T |
12948280 |
gaacttttgttgctttgcatgtttcctaccattgatag |
12948243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 22 - 659
Target Start/End: Complemental strand, 12899806 - 12899169
Alignment:
| Q |
22 |
aagaagaacattacttgcctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgttt |
121 |
Q |
| |
|
|||||| ||||| |||| ||||| ||||||||||| | ||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
12899806 |
aagaaggacattgcttggctttatatcacaatgaaagactaattgctcacattctcgatgaagataatgtaatgcagaagcaacatcgatgatgatgttt |
12899707 |
T |
|
| Q |
122 |
aacctatgaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgtaaccattgttctaagcttccatttttcatgtaatcaaaaacta |
221 |
Q |
| |
|
|| ||||||||||||| ||||||| ||||| | | || ||| ||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
12899706 |
aatctatgaccaaggttcaatgttgttggaggatttgcattcaaagtctcgggatgtaaccattgttctaagcttccatttttcatgtattcaaaaacta |
12899607 |
T |
|
| Q |
222 |
gagctttaaattcttcacctttgtaatctgtactagaacaacaggttaaaaccttaactaagtttcagtgtctaatgtttttgagtgcattacattcaac |
321 |
Q |
| |
|
||||||||||||||| ||||||||||| ||| ||||||||||| |||||||||||||| || |||| ||||| |||||||||||||||||||||||| | |
|
|
| T |
12899606 |
gagctttaaattcttgacctttgtaatttgtgctagaacaacatgttaaaaccttaaccaaatttcggtgtcgaatgtttttgagtgcattacattctaa |
12899507 |
T |
|
| Q |
322 |
aatgaaactcttgctagctccattgttttggaggttgaagactttcacagcaacaacattaccttccgacacaagatttcctctgtacacagaaccgaaa |
421 |
Q |
| |
|
||||||||||||| ||| || || ||||| || || ||||| || || |||||||||||| |||| || || | |||||||||||| || ||||| ||| |
|
|
| T |
12899506 |
aatgaaactcttgtgagcaccctttttttgcagattcaagacctttactgcaacaacattatcttctgaaactatatttcctctgtatacggaaccaaaa |
12899407 |
T |
|
| Q |
422 |
cctcctgatccaatcaagtttttatctgagaatccatcggttccttgatgtaaatcttggtatgaaactttagctagttgatcaattgttggtgaatcaa |
521 |
Q |
| |
|
| ||||||||| ||||||||| ||||||||||||||||||||||| ||||| |||||||| ||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
12899406 |
cttcctgatccgatcaagtttctatctgagaatccatcggttcctacgtgtaattcttggtacgaaaccttagctagttgatcaattgctggtgaatcaa |
12899307 |
T |
|
| Q |
522 |
aagatggtttttggtttcnnnnnnncatccaggtgataattataatgaatgaaagtatgataagaaaagaaaccacactaactatcactgataccaacct |
621 |
Q |
| |
|
||||| ||||| ||| |||| | |||| |||| || ||||||||||||| || |||||||||||||||||||||||||| || |||||| |
|
|
| T |
12899306 |
aagatctcttttgatttattttactcatcatgtagatagttatgataaatgaaagtatgagaataaaagaaaccacactaactatcactgctatcaacct |
12899207 |
T |
|
| Q |
622 |
gaaattatggtgtgttgcatgttttctacctttgatag |
659 |
Q |
| |
|
||| || || ||| || ||||||| ||||| ||||||| |
|
|
| T |
12899206 |
gaacttgtgttgttttacatgtttcctacccttgatag |
12899169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 22 - 659
Target Start/End: Complemental strand, 12958314 - 12957677
Alignment:
| Q |
22 |
aagaagaacattacttgcctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgttt |
121 |
Q |
| |
|
|||||| ||||| |||| |||||||||||| |||| || || |||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
12958314 |
aagaaggacattgcttggctttagatcacagtgaaggattaactgctcacattctcgatgaagataatgtaatgcagaagcaacatcgatgatgatgttt |
12958215 |
T |
|
| Q |
122 |
aacctatgaccaaggtccaatgtttttggatg-ctctgaatttaaaatctcaggatgtaaccattgttctaagcttccatttttcatgtaatcaaaaact |
220 |
Q |
| |
|
|| ||||||||||||| ||||||| ||||| | ||| | ||| ||||| | |||||||||||| ||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
12958214 |
aatctatgaccaaggttcaatgttgttggaggactc-gcattcaaaatttgaggatgtaaccactgttctaagcttccattttccatgtattcaaaaact |
12958116 |
T |
|
| Q |
221 |
agagctttaaattcttcacctttgtaatctgtactagaacaacaggttaaaaccttaactaagtttcagtgtctaatgtttttgagtgcattacattcaa |
320 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||| ||||||||||| ||||||||| |||| || |||| ||||||||| ||||||||||| |||||||||| |
|
|
| T |
12958115 |
agagctttaaattcttgacctttgtaatttgtgctagaacaacatgttaaaaccctaaccaaatttcggtgtctaatatttttgagtgcgttacattcaa |
12958016 |
T |
|
| Q |
321 |
caatgaaactcttgctagctccattgttttggaggttgaagactttcacagcaacaacattaccttccgacacaagatttcctctgtacacagaaccgaa |
420 |
Q |
| |
|
|||||||||||||| |||||| || || |||||||| |||||||| | |||||||||||| |||| || |||| |||||||||||| || ||||| || |
|
|
| T |
12958015 |
caatgaaactcttgtgagctccctttttctggaggttcaagacttttattgcaacaacattatcttctgaaacaatatttcctctgtatacggaaccaaa |
12957916 |
T |
|
| Q |
421 |
acctcctgatccaatcaagtttttatctgagaatccatcggttccttgatgtaaatcttggtatgaaactttagctagttgatcaattgttggtgaatca |
520 |
Q |
| |
|
|| ||||||||| ||||||||| ||||||||||||||| |||||| |||||| |||||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
12957915 |
acttcctgatccgatcaagtttctatctgagaatccattggttccaacatgtaattcttggtatgaaaccttagctagttgatcaattgtaggtgaatca |
12957816 |
T |
|
| Q |
521 |
aaagatggtttttggtttcnnnnnnncatccaggtgataattataatgaatgaaagtatgataagaaaagaaaccacactaactatcactgataccaacc |
620 |
Q |
| |
|
|||||| ||||| |||| |||| | |||| |||| || ||||||||||||| || |||||||||| ||||||||||||||| || ||||| |
|
|
| T |
12957815 |
aaagatctcttttgatttcttttcctcatcatgtagatagttatgataaatgaaagtatgagaataaaagaaaccgcactaactatcactgctatcaacc |
12957716 |
T |
|
| Q |
621 |
tgaaattatggtgtgttgcatgttttctacctttgatag |
659 |
Q |
| |
|
|||| || || || |||||||||| ||||| ||||||| |
|
|
| T |
12957715 |
tgaacttgtgttgctttgcatgtttcctacccttgatag |
12957677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 22 - 659
Target Start/End: Complemental strand, 12932515 - 12931878
Alignment:
| Q |
22 |
aagaagaacattacttgcctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgttt |
121 |
Q |
| |
|
|||||| ||||| |||| |||||||||||||||| || || |||||||||||| |||| || ||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
12932515 |
aagaaggacattgcttggttttagatcacaatgaaggattaactgctcacattctcgatgaaggtaatgcaatgcagaagcaacatcgatgatgatgttt |
12932416 |
T |
|
| Q |
122 |
aacctatgaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgtaaccattgttctaagcttccatttttcatgtaatcaaaaacta |
221 |
Q |
| |
|
|| ||||||||||||| ||||||| ||||| | | || ||| ||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
12932415 |
aatctatgaccaaggttcaatgttgttggaggatttgcattcaaagtctcaggatgtaaccactgttctaagcttccatttttcatgtattcaaaaacta |
12932316 |
T |
|
| Q |
222 |
gagctttaaattcttcacctttgtaatctgtactagaacaacaggttaaaaccttaactaagtttcagtgtctaatgtttttgagtgcattacattcaac |
321 |
Q |
| |
|
| ||||||||||||| ||||||||||| ||| ||||||||||| |||||||||||||| || |||| ||||||||| ||||||||||| ||||||||||| |
|
|
| T |
12932315 |
gtgctttaaattcttgacctttgtaatttgtgctagaacaacatgttaaaaccttaaccaaatttcggtgtctaatatttttgagtgcgttacattcaac |
12932216 |
T |
|
| Q |
322 |
aatgaaactcttgctagctccattgttttggaggttgaagactttcacagcaacaacattaccttccgacacaagatttcctctgtacacagaaccgaaa |
421 |
Q |
| |
|
||||||||||||| |||||| || ||||| || || ||||| || || |||||||||||| |||| ||||| | ||||||| |||| || ||||| ||| |
|
|
| T |
12932215 |
aatgaaactcttgtgagctccctttttttgcagattcaagacctttactgcaacaacattatcttctgacactatatttcctttgtaaacggaaccaaaa |
12932116 |
T |
|
| Q |
422 |
cctcctgatccaatcaagtttttatctgagaatccatcggttccttgatgtaaatcttggtatgaaactttagctagttgatcaattgttggtgaatcaa |
521 |
Q |
| |
|
| ||||||||| |||| |||| ||| |||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
12932115 |
cttcctgatccgatcatgtttctatttgagaatccatcggttccaacatgtaattcttggtatgaaaccttagctagttgatcaattgttggtgaatcaa |
12932016 |
T |
|
| Q |
522 |
aagatggtttttggtttcnnnnnnncatccaggtgataattataatgaatgaaagtatgataagaaaagaaaccacactaactatcactgataccaacct |
621 |
Q |
| |
|
||||| || || |||| |||| | |||| |||| || ||||||||||||| || |||||||||||||||||||| ||||| || |||||| |
|
|
| T |
12932015 |
aagatctcttctgatttcttttcctcatcatgtagatagttatgataaatgaaagtatgagaataaaagaaaccacactaactagcactgctatcaacct |
12931916 |
T |
|
| Q |
622 |
gaaattatggtgtgttgcatgttttctacctttgatag |
659 |
Q |
| |
|
||| || || ||| |||||||||| ||||| ||||||| |
|
|
| T |
12931915 |
gaacttgtgttgttttgcatgtttcctacccttgatag |
12931878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 22 - 659
Target Start/End: Complemental strand, 12907426 - 12906789
Alignment:
| Q |
22 |
aagaagaacattacttgcctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgttt |
121 |
Q |
| |
|
|||||| ||||| |||| |||||||||||||| | || || |||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
12907426 |
aagaaggacattgcttggttttagatcacaatggaggattaactgctcacattctcgatgaagataatgtaatgcagaagcaacatcgatgatgatgttt |
12907327 |
T |
|
| Q |
122 |
aacctatgaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgtaaccattgttctaagcttccatttttcatgtaatcaaaaacta |
221 |
Q |
| |
|
|| ||| ||||||||| ||||||| ||||| | | || ||| ||| | |||||||||||||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
12907326 |
aatctaagaccaaggttcaatgttgttggaggatttgcattcaaagtttcaggatgtaaccactgttctaagcttccatttttcatgtattcaaaaacta |
12907227 |
T |
|
| Q |
222 |
gagctttaaattcttcacctttgtaatctgtactagaacaacaggttaaaaccttaactaagtttcagtgtctaatgtttttgagtgcattacattcaac |
321 |
Q |
| |
|
||||||||||||||| ||||||||||| ||| ||||||||||| |||||||||||||| || |||| ||||||||| ||||||||||| ||||||||||| |
|
|
| T |
12907226 |
gagctttaaattcttgacctttgtaatttgtgctagaacaacatgttaaaaccttaaccaaatttctgtgtctaatatttttgagtgcgttacattcaac |
12907127 |
T |
|
| Q |
322 |
aatgaaactcttgctagctccattgttttggaggttgaagactttcacagcaacaacattaccttccgacacaagatttcctctgtacacagaaccgaaa |
421 |
Q |
| |
|
||||||||| ||| ||| || || |||||||||| ||||| || || |||||||||||| |||| || |||| ||||||| |||| || ||||| ||| |
|
|
| T |
12907126 |
aatgaaacttttgtgagcgccctttgtttggaggttcaagacctttactgcaacaacattatcttctgaaacaatatttcctttgtatacggaaccaaaa |
12907027 |
T |
|
| Q |
422 |
cctcctgatccaatcaagtttttatctgagaatccatcggttccttgatgtaaatcttggtatgaaactttagctagttgatcaattgttggtgaatcaa |
521 |
Q |
| |
|
| ||||||||| |||| |||| |||| |||||| ||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
12907026 |
cttcctgatccgatcatgtttctatccgagaattcatcggttcctacgtgtaattcttggtatgaaaccttagctagttgatcaattgttggtgaatcaa |
12906927 |
T |
|
| Q |
522 |
aagatggtttttggtttcnnnnnnncatccaggtgataattataatgaatgaaagtatgataagaaaagaaaccacactaactatcactgataccaacct |
621 |
Q |
| |
|
||||| ||||| |||| |||| | |||| |||| || ||||||||||||| || ||||||||||||||||||||| |||| || |||||| |
|
|
| T |
12906926 |
aagatctcttttgatttcttttcctcatcatgtagatagttatgataaatgaaagtatgagaataaaagaaaccacactaactatgactgctatcaacct |
12906827 |
T |
|
| Q |
622 |
gaaattatggtgtgttgcatgttttctacctttgatag |
659 |
Q |
| |
|
||| || || ||| |||||||||| ||||| ||||||| |
|
|
| T |
12906826 |
gaacttgtgttgttttgcatgtttcctacccttgatag |
12906789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0692 (Bit Score: 155; Significance: 6e-82; HSPs: 1)
Name: scaffold0692
Description:
Target: scaffold0692; HSP #1
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 22 - 288
Target Start/End: Complemental strand, 7529 - 7263
Alignment:
| Q |
22 |
aagaagaacattacttgcctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgttt |
121 |
Q |
| |
|
|||||| ||||| |||| ||||||||||||||||| || ||||||||||||||| |||| || |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
7529 |
aagaaggacattgcttggctttagatcacaatgaagtattaattgctcacattctcgatgaagttaatgtaatgcagaagcaacatcgatgatgatgttt |
7430 |
T |
|
| Q |
122 |
aacctatgaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgtaaccattgttctaagcttccatttttcatgtaatcaaaaacta |
221 |
Q |
| |
|
|| ||||||||||||| ||||||| ||||| | | || ||| ||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
7429 |
aatctatgaccaaggttcaatgttattggaggatttgcattcaaagtctcaggatgtaaccactgttctaagcttccatttttcatgtattcaaaaacta |
7330 |
T |
|
| Q |
222 |
gagctttaaattcttcacctttgtaatctgtactagaacaacaggttaaaaccttaactaagtttca |
288 |
Q |
| |
|
||||||||||||||| ||||||||||| ||| ||||||||||| ||||||||| |||| || ||||| |
|
|
| T |
7329 |
gagctttaaattcttgacctttgtaatttgtgctagaacaacatgttaaaaccctaaccaaatttca |
7263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 187 - 334
Target Start/End: Original strand, 31467300 - 31467447
Alignment:
| Q |
187 |
ttctaagcttccatttttcatgtaatcaaaaactagagctttaaattcttcacctttgtaatctgtactagaacaacaggttaaaaccttaactaagttt |
286 |
Q |
| |
|
|||||||||||| ||||||||||| || ||||| |||||||||||||||| | ||||| |||||||||| ||||| | ||||||| |||||| || ||| |
|
|
| T |
31467300 |
ttctaagcttccgtttttcatgtactcgaaaacaagagctttaaattcttgatctttgaaatctgtactggaacagcttgttaaaatcttaaccaaattt |
31467399 |
T |
|
| Q |
287 |
cagtgtctaatgtttttgagtgcattacattcaacaatgaaactcttg |
334 |
Q |
| |
|
| ||||||||| |||||||||||||| |||||| ||| |||||||||| |
|
|
| T |
31467400 |
cggtgtctaatatttttgagtgcattgcattcagcaaggaaactcttg |
31467447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 574 - 626
Target Start/End: Original strand, 31467687 - 31467739
Alignment:
| Q |
574 |
aagtatgataagaaaagaaaccacactaactatcactgataccaacctgaaat |
626 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||| || |||| |||||| |
|
|
| T |
31467687 |
aagtataagaagaaaagaaaccacactaactatcactgctatcaacttgaaat |
31467739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 231
Target Start/End: Original strand, 39898820 - 39898877
Alignment:
| Q |
174 |
gatgtaaccattgttctaagcttccatttttcatgtaatcaaaaactagagctttaaa |
231 |
Q |
| |
|
|||| ||||||| ||||||||||||||| ||||||| |||||||||| |||||||| |
|
|
| T |
39898820 |
gatgcaaccattcctctaagcttccatttgtcatgtattcaaaaactattgctttaaa |
39898877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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