View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11001_low_2 (Length: 456)
Name: NF11001_low_2
Description: NF11001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11001_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 120; Significance: 3e-61; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 19 - 153
Target Start/End: Complemental strand, 33356801 - 33356666
Alignment:
| Q |
19 |
catcaattcatcattagctgtggtgatttgtttgttttacatctcaatctcttttggttacataattgtccattgtggaatctacttgttgatgtctttt |
118 |
Q |
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| T |
33356801 |
catcaattcatcattagttgtggtgatttgtttgttttacatctcaatctcttttggttacataattgtccattgtggaatctacttgctgatgtctttt |
33356702 |
T |
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| Q |
119 |
ggtattctcc-tttaagttgctttatggtgccttca |
153 |
Q |
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| T |
33356701 |
ggtattctccttttaagttgctttatggtgccttca |
33356666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 217 - 350
Target Start/End: Complemental strand, 33356602 - 33356468
Alignment:
| Q |
217 |
ctatattgctaatttgtgtttttt-cctgcagaatcactgctcttaagtctaggcattcgtttgttcatccgttgaatgatgtttgattctagatgtctc |
315 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
33356602 |
ctatattgctaatttgtgtttttttcctgcagaatcactgctcttaagtctaggcattcttttgttcatccgttgaaggatgtttgattctagatgtctc |
33356503 |
T |
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| Q |
316 |
tactgatttgcaatttttcccactattcttcaaat |
350 |
Q |
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| T |
33356502 |
tactgatttgcaatttttctcactattcttcaaat |
33356468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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