View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11001_low_3 (Length: 437)
Name: NF11001_low_3
Description: NF11001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11001_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 19 - 422
Target Start/End: Original strand, 51180503 - 51180906
Alignment:
| Q |
19 |
ctcttgaatgattgaagcttcagggtattcatctttacaagtgagtgttaaaattggtaaaatagagaaagttgttttccatttcaacatgactacttaa |
118 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51180503 |
ctcttgagtgattgaagcttcagggtattcatctttacaagtgagtgttaaaattggtaaaatagagaaagttgttttccatttcaacatgactacttaa |
51180602 |
T |
|
| Q |
119 |
tatgacaaaaatgaaaccaaactacttttaattcttatgttcaagtttcattctcatgaaaatatttaactcatattctgtgattaatttcaatgacagt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51180603 |
tatgacaaaaatgaaaccaaactacttttaattcttatgttcaagtttcattctcatgaaaatatttaactcatattctgtgattaatttcaatgacagt |
51180702 |
T |
|
| Q |
219 |
gaactcagtctctaaatgctcagttcatcaactggagaacatagatgagaatgttcctgtagataggcctgcatcatcttgcgccgcacctgatacccca |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51180703 |
gaactcagtctctaaatgctcagttcatcaactggagaacatagatgagaatgttcctgtagataggcctgcatcatcttgcgccgcacctgatacccca |
51180802 |
T |
|
| Q |
319 |
actgaatctatggagttccttgctagatcatggagtctttctgctacggaactctccaaagcactgcacagcaccaattctacgacctccaccggcattg |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
51180803 |
actgaatctatggagttccttgctagatcatggagtctttctgctacggaactctccaaagcactgcacagcaccaattctacaacctccaccggcattg |
51180902 |
T |
|
| Q |
419 |
atgt |
422 |
Q |
| |
|
|||| |
|
|
| T |
51180903 |
atgt |
51180906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 19 - 339
Target Start/End: Complemental strand, 14181849 - 14181524
Alignment:
| Q |
19 |
ctcttgaatgattgaagcttcagggtattcat----ctttacaagtgagtgttaaaattggtaaaatagagaaagttgttttccatttcaacatgactac |
114 |
Q |
| |
|
||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
14181849 |
ctcttgagtgattgaagctttagggtattcattcatctttacaagtgagtgttaaaattggtaaaagagagaaagttgttttccatttcaacattactac |
14181750 |
T |
|
| Q |
115 |
ttaatatga-caaaaatgaaaccaaactacttttaattcttatgttcaagtttcattctcatgaaaatatttaactcatattctgtgattaatttcaatg |
213 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
14181749 |
ttaatatgaacaaaaatgaaaccaaactacttttaattcttatgttcaaggtccattctcatgaaaatatttaactcattttctgtgattaatttcaatg |
14181650 |
T |
|
| Q |
214 |
acagtgaactcagtctctaaatgctcagttcatcaactggagaacatagatgagaatgttcctgtagataggcctgcatcatcttgcgccgcacctgata |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
14181649 |
acagtgaactcagtctctaaatgctcagttaatcagctggagaacatagatgagaatgttcctgtagataggcctgcatcatcttgcgctgcacctgata |
14181550 |
T |
|
| Q |
314 |
ccccaactgaatctatggagttcctt |
339 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
14181549 |
ccccaactgaatctatggagttcctt |
14181524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University