View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11002_high_1 (Length: 257)

Name: NF11002_high_1
Description: NF11002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11002_high_1
NF11002_high_1
[»] chr1 (25 HSPs)
chr1 (16-257)||(9104816-9105057)
chr1 (16-257)||(9096634-9096875)
chr1 (16-257)||(9082364-9082605)
chr1 (16-257)||(8873893-8874134)
chr1 (16-257)||(8964556-8964797)
chr1 (16-257)||(8999707-8999948)
chr1 (16-257)||(9142696-9142937)
chr1 (16-257)||(9056605-9056846)
chr1 (16-248)||(9152259-9152490)
chr1 (16-230)||(9319946-9320160)
chr1 (16-230)||(9350263-9350477)
chr1 (16-230)||(9318142-9318356)
chr1 (16-100)||(8932145-8932229)
chr1 (16-101)||(8942061-8942146)
chr1 (16-100)||(8920740-8920824)
chr1 (16-100)||(8956067-8956151)
chr1 (16-215)||(9399676-9399875)
chr1 (39-215)||(9432704-9432880)
chr1 (39-215)||(9453691-9453867)
chr1 (142-230)||(9254880-9254968)
chr1 (16-92)||(9255018-9255094)
chr1 (16-71)||(9234070-9234125)
chr1 (16-71)||(9384269-9384324)
chr1 (40-98)||(10974314-10974372)
chr1 (34-95)||(9488612-9488673)
[»] chr6 (1 HSPs)
chr6 (16-215)||(15927063-15927262)
[»] chr3 (1 HSPs)
chr3 (16-230)||(9159636-9159850)


Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 16 - 257
Target Start/End: Complemental strand, 9105057 - 9104816
Alignment:
Q  16 acatcagccttataggaaactcccccaatatttttgtagaacaattctggagccatatatccaattgtacctcttgcagcagtcattgtgatgacgttgt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  9105057 acatcagccttataggaaactcccccaatatttttgtagaacaattctggagccatatatccaattgtacctcttgcagcagtcattgtgatgacgctgt 9104958  T
Q  116 tgtccatcggatgtagctttgccaatccaaagtcagatagtttagggataaagttctcatcaagaaggatattgtggggcttgatatcaaaatgtaaaat 215  Q
    | || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9104957 tctctattggatgtagctttgccaatccaaagtcagatagtttagggataaagttctcatcaagaaggatattgtggggcttgatatcaaaatgtaaaat 9104858  T
Q  216 cttcatttcacatccgcggtgaagataaccaatcccacgagc 257  Q
    |||||||||||||||| ||||||||||| |||||||||||||    
T  9104857 cttcatttcacatccgtggtgaagataagcaatcccacgagc 9104816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 16 - 257
Target Start/End: Complemental strand, 9096875 - 9096634
Alignment:
Q  16 acatcagccttataggaaactcccccaatatttttgtagaacaattctggagccatatatccaattgtacctcttgcagcagtcattgtgatgacgttgt 115  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  9096875 acatcagctttataggaaactcccccaatatttttgtagaacaattctggagccatatatccaattgtacctcttgcagcagtcattgtgatgacgctgt 9096776  T
Q  116 tgtccatcggatgtagctttgccaatccaaagtcagatagtttagggataaagttctcatcaagaaggatattgtggggcttgatatcaaaatgtaaaat 215  Q
    | || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9096775 tctctattggatgtagctttgccaatccaaagtcagatagtttagggataaagttctcatcaagaaggatattgtggggcttgatatcaaaatgtaaaat 9096676  T
Q  216 cttcatttcacatccgcggtgaagataaccaatcccacgagc 257  Q
    |||||||||||||||| ||||||||||| |||||||||||||    
T  9096675 cttcatttcacatccgtggtgaagataagcaatcccacgagc 9096634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 16 - 257
Target Start/End: Complemental strand, 9082605 - 9082364
Alignment:
Q  16 acatcagccttataggaaactcccccaatatttttgtagaacaattctggagccatatatccaattgtacctcttgcagcagtcattgtgatgacgttgt 115  Q
    ||||||||||| || || |||||||| |||||||||||||| || || ||||||||||||||||||||||||||||| |||||||||||||||||| | |    
T  9082605 acatcagccttgtacgacactccccctatatttttgtagaataactcaggagccatatatccaattgtacctcttgctgcagtcattgtgatgacgctat 9082506  T
Q  116 tgtccatcggatgtagctttgccaatccaaagtcagatagtttagggataaagttctcatcaagaaggatattgtggggcttgatatcaaaatgtaaaat 215  Q
    | || ||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  9082505 tctctatcgggtgtagttttgccaatccaaagtcagatattttagggataaagttctcatcaagcaagatattgtggggcttgatatcaaaatgtaaaat 9082406  T
Q  216 cttcatttcacatccgcggtgaagataaccaatcccacgagc 257  Q
    |||||||||||||||  ||||||||||| |||||||||||||    
T  9082405 cttcatttcacatccatggtgaagataagcaatcccacgagc 9082364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 16 - 257
Target Start/End: Complemental strand, 8874134 - 8873893
Alignment:
Q  16 acatcagccttataggaaactcccccaatatttttgtagaacaattctggagccatatatccaattgtacctcttgcagcagtcattgtgatgacgttgt 115  Q
    ||||||||||||||||| ||||| ||||||||||| || |||||||||||||||||||||||||| ||||||||||| |||||||||||||  | | | |    
T  8874134 acatcagccttataggacactccaccaatatttttataaaacaattctggagccatatatccaatggtacctcttgccgcagtcattgtgacaatgctat 8874035  T
Q  116 tgtccatcggatgtagctttgccaatccaaagtcagatagtttagggataaagttctcatcaagaaggatattgtggggcttgatatcaaaatgtaaaat 215  Q
    | ||||  |||| |||||| ||||||||||||||||| | ||| ||  |||||||||||||||||||||| ||||| ||||| ||||||||||| |||||    
T  8874034 tctccacaggatatagcttagccaatccaaagtcagagactttcggagtaaagttctcatcaagaaggatgttgtgaggcttaatatcaaaatgcaaaat 8873935  T
Q  216 cttcatttcacatccgcggtgaagataaccaatcccacgagc 257  Q
    |||||||||||||||  | || |||||| |||||||||||||    
T  8873934 cttcatttcacatccatgatggagataagcaatcccacgagc 8873893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 16 - 257
Target Start/End: Original strand, 8964556 - 8964797
Alignment:
Q  16 acatcagccttataggaaactcccccaatatttttgtagaacaattctggagccatatatccaattgtacctcttgcagcagtcattgtgatgacgttgt 115  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || ||||||||||  | | | |    
T  8964556 acatcagccttataggacactcccccaatatttttatagaacaattctggagccatatatccaatggtacctcttgccgctgtcattgtgacaatgctat 8964655  T
Q  116 tgtccatcggatgtagctttgccaatccaaagtcagatagtttagggataaagttctcatcaagaaggatattgtggggcttgatatcaaaatgtaaaat 215  Q
    | || |  |||| |||||| ||||||||||||||||| | ||| ||| | || ||||||||||||||||| ||||| ||||| ||||||||||| |||||    
T  8964656 tctctacaggatatagcttagccaatccaaagtcagagacttttggggtgaaattctcatcaagaaggatgttgtgaggcttaatatcaaaatgcaaaat 8964755  T
Q  216 cttcatttcacatccgcggtgaagataaccaatcccacgagc 257  Q
    ||||||||| |||||  ||||||||||| |||||||||||||    
T  8964756 cttcatttcgcatccatggtgaagataagcaatcccacgagc 8964797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 16 - 257
Target Start/End: Original strand, 8999707 - 8999948
Alignment:
Q  16 acatcagccttataggaaactcccccaatatttttgtagaacaattctggagccatatatccaattgtacctcttgcagcagtcattgtgatgacgttgt 115  Q
    |||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||  | | | |    
T  8999707 acatcagccttataagacactcccccaatatttttatagaacaattctggagccatatatccaatggtacctcttgccgcagtcattgtgacaatgctat 8999806  T
Q  116 tgtccatcggatgtagctttgccaatccaaagtcagatagtttagggataaagttctcatcaagaaggatattgtggggcttgatatcaaaatgtaaaat 215  Q
    | ||||  |||| |||||| |||||||| |||||||| | ||| ||  | ||||| |||||||||||||| ||||| |||||||||||||||||||||||    
T  8999807 tctccacgggatatagcttagccaatccgaagtcagagacttttggtgtgaagttttcatcaagaaggatgttgtgaggcttgatatcaaaatgtaaaat 8999906  T
Q  216 cttcatttcacatccgcggtgaagataaccaatcccacgagc 257  Q
    ||||||||| |||||  |||| |||||| |||||||||||||    
T  8999907 cttcatttcgcatccatggtggagataagcaatcccacgagc 8999948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 16 - 257
Target Start/End: Complemental strand, 9142937 - 9142696
Alignment:
Q  16 acatcagccttataggaaactcccccaatatttttgtagaacaattctggagccatatatccaattgtacctcttgcagcagtcattgtgatgacgttgt 115  Q
    ||||| ||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||| |||||||||||||  | | | |    
T  9142937 acatcggccttataggacactcccccaatatttttgtagaacaactccggagccatatatccaatagtacctcttgctgcagtcattgtgacaatgctat 9142838  T
Q  116 tgtccatcggatgtagctttgccaatccaaagtcagatagtttagggataaagttctcatcaagaaggatattgtggggcttgatatcaaaatgtaaaat 215  Q
    | || ||||||| ||||||||| | ||||||||||||||  || || ||||||||||||||||| || ||||| ||||||||||||||||||||||| ||    
T  9142837 tctcaatcggatatagctttgcgagtccaaagtcagatatctttggaataaagttctcatcaagcagaatattatggggcttgatatcaaaatgtaatat 9142738  T
Q  216 cttcatttcacatccgcggtgaagataaccaatcccacgagc 257  Q
    |||||||||||||||  |||| |||||| |||| || |||||    
T  9142737 cttcatttcacatccatggtggagataagcaattcctcgagc 9142696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 16 - 257
Target Start/End: Original strand, 9056605 - 9056846
Alignment:
Q  16 acatcagccttataggaaactcccccaatatttttgtagaacaattctggagccatatatccaattgtacctcttgcagcagtcattgtgatgacgttgt 115  Q
    |||||||||||||| || ||||| |||||||||||||| |||||||| |||||||||||||||||||| ||| | || |||||||||||||  | | | |    
T  9056605 acatcagccttatacgacactccaccaatatttttgtaaaacaattcaggagccatatatccaattgtgcctttggctgcagtcattgtgacaatgctat 9056704  T
Q  116 tgtccatcggatgtagctttgccaatccaaagtcagatagtttagggataaagttctcatcaagaaggatattgtggggcttgatatcaaaatgtaaaat 215  Q
    |    || |||| ||||||||| | ||||||||||||||  || || ||||| ||||| ||||| ||||||||||| ||||||||||||||||| |||||    
T  9056705 tcgtaattggatatagctttgcgagtccaaagtcagatatctttggaataaaattctcgtcaagtaggatattgtgtggcttgatatcaaaatgcaaaat 9056804  T
Q  216 cttcatttcacatccgcggtgaagataaccaatcccacgagc 257  Q
     ||||||||||||||    || |||||| |||||||||||||    
T  9056805 tttcatttcacatccattatggagataatcaatcccacgagc 9056846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 16 - 248
Target Start/End: Complemental strand, 9152490 - 9152259
Alignment:
Q  16 acatcagccttataggaaactcccccaatatttttgtagaacaattctggagccatatatccaattgtacctcttgcagcagtcattgtgatgacgttgt 115  Q
    ||||| ||||||||||| |||||||| |||||| |||| ||||||||| ||||||||||||||||||||| |||||  ||||||||  |||  | | | |    
T  9152490 acatcggccttataggacactcccccgatatttatgtaaaacaattctagagccatatatccaattgtacatcttgatgcagtcata-tgacaatgctat 9152392  T
Q  116 tgtccatcggatgtagctttgccaatccaaagtcagatagtttagggataaagttctcatcaagaaggatattgtggggcttgatatcaaaatgtaaaat 215  Q
    | || | ||||| ||||||||| | |||||||||| | |  |  ||||||||||||||||| |   | ||||||||||||||||||||||||||||||||    
T  9152391 tctctagcggatatagctttgcgagtccaaagtcaaaaatctatgggataaagttctcatctaaccgaatattgtggggcttgatatcaaaatgtaaaat 9152292  T
Q  216 cttcatttcacatccgcggtgaagataaccaat 248  Q
    |||||||||||||||  |||| |||||| ||||    
T  9152291 cttcatttcacatccatggtggagataagcaat 9152259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 230
Target Start/End: Original strand, 9319946 - 9320160
Alignment:
Q  16 acatcagccttataggaaactcccccaatatttttgtagaacaattctggagccatatatccaattgtacctcttgcagcagtcattgtgatgacgttgt 115  Q
    ||||||||||| ||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||| |  ||||  | | |      
T  9319946 acatcagccttgtaggatactcctccaatatttttgtagaacaattcaggagccatatatccaattgttcctcttgctgcagttaaagtgacaatgctaa 9320045  T
Q  116 tgtccatcggatgtagctttgccaatccaaagtcagatagtttagggataaagttctcatcaagaaggatattgtggggcttgatatcaaaatgtaaaat 215  Q
    | ||  | ||||  ||||| || |  |||||||| || | ||| |||||||||||||||||||||||||| || |||||||||||||||||||| |||||    
T  9320046 tctcattaggataaagcttagcaagaccaaagtctgaaactttggggataaagttctcatcaagaaggatgttatggggcttgatatcaaaatgcaaaat 9320145  T
Q  216 cttcatttcacatcc 230  Q
     | ||| ||||||||    
T  9320146 ttgcatgtcacatcc 9320160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 230
Target Start/End: Original strand, 9350263 - 9350477
Alignment:
Q  16 acatcagccttataggaaactcccccaatatttttgtagaacaattctggagccatatatccaattgtacctcttgcagcagtcattgtgatgacgttgt 115  Q
    ||||||||||| ||||| ||||| |||||||||||||||||||| || |||||||||||||||||||| |||||||| ||||| |  ||||  | | |      
T  9350263 acatcagccttgtaggatactcctccaatatttttgtagaacaactcaggagccatatatccaattgttcctcttgctgcagttaaagtgacaatgctaa 9350362  T
Q  116 tgtccatcggatgtagctttgccaatccaaagtcagatagtttagggataaagttctcatcaagaaggatattgtggggcttgatatcaaaatgtaaaat 215  Q
    | ||  | ||||  ||||| || |  |||||||| || | ||| |||||||||||||||||||||||||| || |||||||||||||||||||| |||||    
T  9350363 tctcattaggataaagcttagcaagaccaaagtctgaaactttggggataaagttctcatcaagaaggatgttatggggcttgatatcaaaatgcaaaat 9350462  T
Q  216 cttcatttcacatcc 230  Q
     | ||| ||||||||    
T  9350463 ttgcatgtcacatcc 9350477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 16 - 230
Target Start/End: Complemental strand, 9318356 - 9318142
Alignment:
Q  16 acatcagccttataggaaactcccccaatatttttgtagaacaattctggagccatatatccaattgtacctcttgcagcagtcattgtgatgacgttgt 115  Q
    ||||| ||||| ||||| ||||| ||||||||||||||||||||||| |||||||| ||||||||||| ||||| || ||||| |  ||||  | | |      
T  9318356 acatcggccttgtaggatactcctccaatatttttgtagaacaattcaggagccatgtatccaattgttcctctagctgcagttaaagtgacaatgctaa 9318257  T
Q  116 tgtccatcggatgtagctttgccaatccaaagtcagatagtttagggataaagttctcatcaagaaggatattgtggggcttgatatcaaaatgtaaaat 215  Q
    ||||  | ||||  ||||||||||  |||||||| || | ||| || ||||||||||||||||||||||| || |||||||||||||||||||| || ||    
T  9318256 tgtcatttggataaagctttgccagaccaaagtctgaaactttgggaataaagttctcatcaagaaggatgttatggggcttgatatcaaaatgcaagat 9318157  T
Q  216 cttcatttcacatcc 230  Q
     | ||| ||||||||    
T  9318156 ttgcatgtcacatcc 9318142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 8932145 - 8932229
Alignment:
Q  16 acatcagccttataggaaactcccccaatatttttgtagaacaattctggagccatatatccaattgtacctcttgcagcagtca 100  Q
    ||||| |||||||||||||||   |||||||||||||||||||||||||| ||||| || |||||||| ||||||||||||||||    
T  8932145 acatcggccttataggaaactttaccaatatttttgtagaacaattctggtgccatgtaaccaattgttcctcttgcagcagtca 8932229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 8942061 - 8942146
Alignment:
Q  16 acatcagccttataggaaactcccccaatatttttgtagaacaattctggagccatatatccaattgtacctcttgcagcagtcat 101  Q
    ||||| || ||||||||||||   |||||||||||||||||||||||||| ||||| || |||||||||||||| ||||| |||||    
T  8942061 acatcggctttataggaaactttaccaatatttttgtagaacaattctggtgccatgtaaccaattgtacctctagcagcggtcat 8942146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 8920740 - 8920824
Alignment:
Q  16 acatcagccttataggaaactcccccaatatttttgtagaacaattctggagccatatatccaattgtacctcttgcagcagtca 100  Q
    ||||| ||||||||||| |||   |||||||||||||||||||| ||||| ||||| || |||||||| ||||||||||||||||    
T  8920740 acatcggccttataggagactttaccaatatttttgtagaacaactctggtgccatgtaaccaattgttcctcttgcagcagtca 8920824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 8956067 - 8956151
Alignment:
Q  16 acatcagccttataggaaactcccccaatatttttgtagaacaattctggagccatatatccaattgtacctcttgcagcagtca 100  Q
    ||||| |||||||||||||||   ||||||||||||||||| ||||| |||||||| || |||||||| ||||||||||| ||||    
T  8956067 acatcggccttataggaaactttaccaatatttttgtagaataattccggagccatgtaaccaattgttcctcttgcagccgtca 8956151  T

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Target: chr1; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 215
Target Start/End: Original strand, 9399676 - 9399875
Alignment:
Q  16 acatcagccttataggaaactcccccaatatttttgtagaacaattctggagccatatatccaattgtacctcttgcagcagtcattgtgatgacgttgt 115  Q
    |||||||||||||| || | |||||||||||||| | |||||| ||| |||||||| || |||||||| |||||||| ||  |||  |||   | | | |    
T  9399676 acatcagccttatatgatattcccccaatattttggaagaacagttcaggagccatgtaaccaattgttcctcttgctgccatcaaagtggcaatgcttt 9399775  T
Q  116 tgtccatcggatgtagctttgccaatccaaagtcagatagtttagggataaagttctcatcaagaaggatattgtggggcttgatatcaaaatgtaaaat 215  Q
    |||| || ||||  |||||||| |  |||||||| || | ||||||||| || || || ||||||||||| ||||| ||||| ||||||||||| |||||    
T  9399776 tgtcaataggataaagctttgcaagaccaaagtccgaaactttagggatgaaattttcgtcaagaaggatgttgtgaggcttaatatcaaaatgcaaaat 9399875  T

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Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 215
Target Start/End: Complemental strand, 9432880 - 9432704
Alignment:
Q  39 cccaatatttttgtagaacaattctggagccatatatccaattgtacctcttgcagcagtcattgtgatgacgttgttgtccatcggatgtagctttgcc 138  Q
    ||||||||||| |||||||||||| |||||||| || |||||||| |||||||| || ||||  |||   | | | ||||| || ||||  ||||||||     
T  9432880 cccaatattttggtagaacaattcaggagccatgtaaccaattgttcctcttgctgccgtcaaagtggcaatgcttttgtcaataggataaagctttgca 9432781  T
Q  139 aatccaaagtcagatagtttagggataaagttctcatcaagaaggatattgtggggcttgatatcaaaatgtaaaat 215  Q
    |  |||||||| || | ||||||||| || || || || |||||||| ||||| ||||| ||||||||||| |||||    
T  9432780 agaccaaagtccgaaactttagggatgaaattttcgtccagaaggatgttgtgaggcttaatatcaaaatgcaaaat 9432704  T

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Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 215
Target Start/End: Complemental strand, 9453867 - 9453691
Alignment:
Q  39 cccaatatttttgtagaacaattctggagccatatatccaattgtacctcttgcagcagtcattgtgatgacgttgttgtccatcggatgtagctttgcc 138  Q
    ||||||||||| |||||||||||| |||||||| || |||||||| |||||||| || ||||  | ||  | | | ||||| || ||||  ||||||||     
T  9453867 cccaatattttggtagaacaattcaggagccatgtaaccaattgttcctcttgctgctgtcaaagcgacaatgctattgtcaataggataaagctttgca 9453768  T
Q  139 aatccaaagtcagatagtttagggataaagttctcatcaagaaggatattgtggggcttgatatcaaaatgtaaaat 215  Q
    |  ||||| || || | ||||||||| || || || ||||||||||| ||||| ||||| ||||||||||| |||||    
T  9453767 agaccaaaatctgaaactttagggatgaaattttcgtcaagaaggatgttgtgaggcttaatatcaaaatgcaaaat 9453691  T

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Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 142 - 230
Target Start/End: Complemental strand, 9254968 - 9254880
Alignment:
Q  142 ccaaagtcagatagtttagggataaagttctcatcaagaaggatattgtggggcttgatatcaaaatgtaaaatcttcatttcacatcc 230  Q
    |||||||| || | ||| ||| ||||||||||||| |||||||| || ||||||||||| |||||||| ||||| | |||||| |||||    
T  9254968 ccaaagtctgaaactttggggttaaagttctcatcgagaaggatgttatggggcttgatgtcaaaatgcaaaatttgcatttcgcatcc 9254880  T

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Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 9255094 - 9255018
Alignment:
Q  16 acatcagccttataggaaactcccccaatatttttgtagaacaattctggagccatatatccaattgtacctcttgc 92  Q
    ||||| ||||| || || ||||| |||||||||| |||||||||||| |||||||| ||||||||||| || |||||    
T  9255094 acatcggccttgtacgatactcctccaatattttggtagaacaattcaggagccatgtatccaattgtcccccttgc 9255018  T

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Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 9234125 - 9234070
Alignment:
Q  16 acatcagccttataggaaactcccccaatatttttgtagaacaattctggagccat 71  Q
    |||||||| || || || ||||| ||||||||||||||||||||||| ||||||||    
T  9234125 acatcagctttgtacgacactccaccaatatttttgtagaacaattcaggagccat 9234070  T

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Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 9384269 - 9384324
Alignment:
Q  16 acatcagccttataggaaactcccccaatatttttgtagaacaattctggagccat 71  Q
    ||||||||||| || || ||||| ||||||||||||||||||| ||| ||||||||    
T  9384269 acatcagccttgtaagacactccaccaatatttttgtagaacagttcaggagccat 9384324  T

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Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 98
Target Start/End: Original strand, 10974314 - 10974372
Alignment:
Q  40 ccaatatttttgtagaacaattctggagccatatatccaattgtacctcttgcagcagt 98  Q
    ||||||||| ||||||||| ||| || ||||| |||||||| || ||||||||||||||    
T  10974314 ccaatatttctgtagaacagttcaggggccatgtatccaatcgttcctcttgcagcagt 10974372  T

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Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 9488612 - 9488673
Alignment:
Q  34 actcccccaatatttttgtagaacaattctggagccatatatccaattgtacctcttgcagc 95  Q
    ||||| |||||||| || |||||||||||||| ||||| ||||| || || |||||||||||    
T  9488612 actcctccaatattcttatagaacaattctggtgccatgtatcccatagttcctcttgcagc 9488673  T

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Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 215
Target Start/End: Complemental strand, 15927262 - 15927063
Alignment:
Q  16 acatcagccttataggaaactcccccaatatttttgtagaacaattctggagccatatatccaattgtacctcttgcagcagtcattgtgatgacgttgt 115  Q
    ||||| |||||||| |||||||| ||||||||||||||||| ||||| |||||||| |||||||| || |||||||| ||||| |  ||||  |   |      
T  15927262 acatcggccttatacgaaactcctccaatatttttgtagaataattcaggagccatgtatccaatcgttcctcttgctgcagttaaagtgacaatactaa 15927163  T
Q  116 tgtccatcggatgtagctttgccaatccaaagtcagatagtttagggataaagttctcatcaagaaggatattgtggggcttgatatcaaaatgtaaaat 215  Q
    | ||  | ||||  |||||||| |  |||||||| || | ||| |||||||||||||||||||||||||| || ||||||||||| |||||||| |||||    
T  15927162 tctcattaggataaagctttgcaagaccaaagtcggaaactttggggataaagttctcatcaagaaggatgttatggggcttgatgtcaaaatgcaaaat 15927063  T

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Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 230
Target Start/End: Original strand, 9159636 - 9159850
Alignment:
Q  16 acatcagccttataggaaactcccccaatatttttgtagaacaattctggagccatatatccaattgtacctcttgcagcagtcattgtgatgacgttgt 115  Q
    ||||||||||| || || ||||| |||||||||||||||||||| || ||||||||||| |||||||| |||||||| ||||| |   | |  |   | |    
T  9159636 acatcagccttgtatgatactccaccaatatttttgtagaacaactcgggagccatataaccaattgttcctcttgctgcagttaaatttacaatactat 9159735  T
Q  116 tgtccatcggatgtagctttgccaatccaaagtcagatagtttagggataaagttctcatcaagaaggatattgtggggcttgatatcaaaatgtaaaat 215  Q
    ||||  | ||||  |||||||| |  ||||||||||| |  || |||||||||||||| |||||||| || || |||||||||||||||||||| || ||    
T  9159736 tgtcattaggataaagctttgcaagaccaaagtcagaaaccttggggataaagttctcgtcaagaagtatgttatggggcttgatatcaaaatgcaagat 9159835  T
Q  216 cttcatttcacatcc 230  Q
     | ||| ||||||||    
T  9159836 ttgcatgtcacatcc 9159850  T

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