View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11002_low_2 (Length: 257)

Name: NF11002_low_2
Description: NF11002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11002_low_2
NF11002_low_2
[»] chr1 (25 HSPs)
chr1 (16-257)||(9104816-9105057)
chr1 (16-257)||(9096634-9096875)
chr1 (16-257)||(9082364-9082605)
chr1 (16-257)||(8873893-8874134)
chr1 (16-257)||(8964556-8964797)
chr1 (16-257)||(8999707-8999948)
chr1 (16-257)||(9142696-9142937)
chr1 (16-257)||(9056605-9056846)
chr1 (16-248)||(9152259-9152490)
chr1 (16-230)||(9319946-9320160)
chr1 (16-230)||(9350263-9350477)
chr1 (16-230)||(9318142-9318356)
chr1 (16-100)||(8932145-8932229)
chr1 (16-101)||(8942061-8942146)
chr1 (16-100)||(8920740-8920824)
chr1 (16-100)||(8956067-8956151)
chr1 (16-215)||(9399676-9399875)
chr1 (39-215)||(9432704-9432880)
chr1 (39-215)||(9453691-9453867)
chr1 (142-230)||(9254880-9254968)
chr1 (16-92)||(9255018-9255094)
chr1 (16-71)||(9234070-9234125)
chr1 (16-71)||(9384269-9384324)
chr1 (40-98)||(10974314-10974372)
chr1 (34-95)||(9488612-9488673)
[»] chr6 (1 HSPs)
chr6 (16-215)||(15927063-15927262)
[»] chr3 (1 HSPs)
chr3 (16-230)||(9159636-9159850)


Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 16 - 257
Target Start/End: Complemental strand, 9105057 - 9104816
Alignment:
Q  16 acatcagccttataggaaactcccccaatatttttgtagaacaattctggagccatatatccaattgtacctcttgcagcagtcattgtgatgacgttgt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  9105057 acatcagccttataggaaactcccccaatatttttgtagaacaattctggagccatatatccaattgtacctcttgcagcagtcattgtgatgacgctgt 9104958  T
Q  116 tgtccatcggatgtagctttgccaatccaaagtcagatagtttagggataaagttctcatcaagaaggatattgtggggcttgatatcaaaatgtaaaat 215  Q
    | || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9104957 tctctattggatgtagctttgccaatccaaagtcagatagtttagggataaagttctcatcaagaaggatattgtggggcttgatatcaaaatgtaaaat 9104858  T
Q  216 cttcatttcacatccgcggtgaagataaccaatcccacgagc 257  Q
    |||||||||||||||| ||||||||||| |||||||||||||    
T  9104857 cttcatttcacatccgtggtgaagataagcaatcccacgagc 9104816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 16 - 257
Target Start/End: Complemental strand, 9096875 - 9096634
Alignment:
Q  16 acatcagccttataggaaactcccccaatatttttgtagaacaattctggagccatatatccaattgtacctcttgcagcagtcattgtgatgacgttgt 115  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  9096875 acatcagctttataggaaactcccccaatatttttgtagaacaattctggagccatatatccaattgtacctcttgcagcagtcattgtgatgacgctgt 9096776  T
Q  116 tgtccatcggatgtagctttgccaatccaaagtcagatagtttagggataaagttctcatcaagaaggatattgtggggcttgatatcaaaatgtaaaat 215  Q
    | || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9096775 tctctattggatgtagctttgccaatccaaagtcagatagtttagggataaagttctcatcaagaaggatattgtggggcttgatatcaaaatgtaaaat 9096676  T
Q  216 cttcatttcacatccgcggtgaagataaccaatcccacgagc 257  Q
    |||||||||||||||| ||||||||||| |||||||||||||    
T  9096675 cttcatttcacatccgtggtgaagataagcaatcccacgagc 9096634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 16 - 257
Target Start/End: Complemental strand, 9082605 - 9082364
Alignment:
Q  16 acatcagccttataggaaactcccccaatatttttgtagaacaattctggagccatatatccaattgtacctcttgcagcagtcattgtgatgacgttgt 115  Q
    ||||||||||| || || |||||||| |||||||||||||| || || ||||||||||||||||||||||||||||| |||||||||||||||||| | |    
T  9082605 acatcagccttgtacgacactccccctatatttttgtagaataactcaggagccatatatccaattgtacctcttgctgcagtcattgtgatgacgctat 9082506  T
Q  116 tgtccatcggatgtagctttgccaatccaaagtcagatagtttagggataaagttctcatcaagaaggatattgtggggcttgatatcaaaatgtaaaat 215  Q
    | || ||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  9082505 tctctatcgggtgtagttttgccaatccaaagtcagatattttagggataaagttctcatcaagcaagatattgtggggcttgatatcaaaatgtaaaat 9082406  T
Q  216 cttcatttcacatccgcggtgaagataaccaatcccacgagc 257  Q
    |||||||||||||||  ||||||||||| |||||||||||||    
T  9082405 cttcatttcacatccatggtgaagataagcaatcccacgagc 9082364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 16 - 257
Target Start/End: Complemental strand, 8874134 - 8873893
Alignment:
Q  16 acatcagccttataggaaactcccccaatatttttgtagaacaattctggagccatatatccaattgtacctcttgcagcagtcattgtgatgacgttgt 115  Q
    ||||||||||||||||| ||||| ||||||||||| || |||||||||||||||||||||||||| ||||||||||| |||||||||||||  | | | |    
T  8874134 acatcagccttataggacactccaccaatatttttataaaacaattctggagccatatatccaatggtacctcttgccgcagtcattgtgacaatgctat 8874035  T
Q  116 tgtccatcggatgtagctttgccaatccaaagtcagatagtttagggataaagttctcatcaagaaggatattgtggggcttgatatcaaaatgtaaaat 215  Q
    | ||||  |||| |||||| ||||||||||||||||| | ||| ||  |||||||||||||||||||||| ||||| ||||| ||||||||||| |||||    
T  8874034 tctccacaggatatagcttagccaatccaaagtcagagactttcggagtaaagttctcatcaagaaggatgttgtgaggcttaatatcaaaatgcaaaat 8873935  T
Q  216 cttcatttcacatccgcggtgaagataaccaatcccacgagc 257  Q
    |||||||||||||||  | || |||||| |||||||||||||    
T  8873934 cttcatttcacatccatgatggagataagcaatcccacgagc 8873893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 16 - 257
Target Start/End: Original strand, 8964556 - 8964797
Alignment:
Q  16 acatcagccttataggaaactcccccaatatttttgtagaacaattctggagccatatatccaattgtacctcttgcagcagtcattgtgatgacgttgt 115  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || ||||||||||  | | | |    
T  8964556 acatcagccttataggacactcccccaatatttttatagaacaattctggagccatatatccaatggtacctcttgccgctgtcattgtgacaatgctat 8964655  T
Q  116 tgtccatcggatgtagctttgccaatccaaagtcagatagtttagggataaagttctcatcaagaaggatattgtggggcttgatatcaaaatgtaaaat 215  Q
    | || |  |||| |||||| ||||||||||||||||| | ||| ||| | || ||||||||||||||||| ||||| ||||| ||||||||||| |||||    
T  8964656 tctctacaggatatagcttagccaatccaaagtcagagacttttggggtgaaattctcatcaagaaggatgttgtgaggcttaatatcaaaatgcaaaat 8964755  T
Q  216 cttcatttcacatccgcggtgaagataaccaatcccacgagc 257  Q
    ||||||||| |||||  ||||||||||| |||||||||||||    
T  8964756 cttcatttcgcatccatggtgaagataagcaatcccacgagc 8964797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 16 - 257
Target Start/End: Original strand, 8999707 - 8999948
Alignment:
Q  16 acatcagccttataggaaactcccccaatatttttgtagaacaattctggagccatatatccaattgtacctcttgcagcagtcattgtgatgacgttgt 115  Q
    |||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||  | | | |    
T  8999707 acatcagccttataagacactcccccaatatttttatagaacaattctggagccatatatccaatggtacctcttgccgcagtcattgtgacaatgctat 8999806  T
Q  116 tgtccatcggatgtagctttgccaatccaaagtcagatagtttagggataaagttctcatcaagaaggatattgtggggcttgatatcaaaatgtaaaat 215  Q
    | ||||  |||| |||||| |||||||| |||||||| | ||| ||  | ||||| |||||||||||||| ||||| |||||||||||||||||||||||    
T  8999807 tctccacgggatatagcttagccaatccgaagtcagagacttttggtgtgaagttttcatcaagaaggatgttgtgaggcttgatatcaaaatgtaaaat 8999906  T
Q  216 cttcatttcacatccgcggtgaagataaccaatcccacgagc 257  Q
    ||||||||| |||||  |||| |||||| |||||||||||||    
T  8999907 cttcatttcgcatccatggtggagataagcaatcccacgagc 8999948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 16 - 257
Target Start/End: Complemental strand, 9142937 - 9142696
Alignment:
Q  16 acatcagccttataggaaactcccccaatatttttgtagaacaattctggagccatatatccaattgtacctcttgcagcagtcattgtgatgacgttgt 115  Q
    ||||| ||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||| |||||||||||||  | | | |    
T  9142937 acatcggccttataggacactcccccaatatttttgtagaacaactccggagccatatatccaatagtacctcttgctgcagtcattgtgacaatgctat 9142838  T
Q  116 tgtccatcggatgtagctttgccaatccaaagtcagatagtttagggataaagttctcatcaagaaggatattgtggggcttgatatcaaaatgtaaaat 215  Q
    | || ||||||| ||||||||| | ||||||||||||||  || || ||||||||||||||||| || ||||| ||||||||||||||||||||||| ||    
T  9142837 tctcaatcggatatagctttgcgagtccaaagtcagatatctttggaataaagttctcatcaagcagaatattatggggcttgatatcaaaatgtaatat 9142738  T
Q  216 cttcatttcacatccgcggtgaagataaccaatcccacgagc 257  Q
    |||||||||||||||  |||| |||||| |||| || |||||    
T  9142737 cttcatttcacatccatggtggagataagcaattcctcgagc 9142696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 16 - 257
Target Start/End: Original strand, 9056605 - 9056846
Alignment:
Q  16 acatcagccttataggaaactcccccaatatttttgtagaacaattctggagccatatatccaattgtacctcttgcagcagtcattgtgatgacgttgt 115  Q
    |||||||||||||| || ||||| |||||||||||||| |||||||| |||||||||||||||||||| ||| | || |||||||||||||  | | | |    
T  9056605 acatcagccttatacgacactccaccaatatttttgtaaaacaattcaggagccatatatccaattgtgcctttggctgcagtcattgtgacaatgctat 9056704  T
Q  116 tgtccatcggatgtagctttgccaatccaaagtcagatagtttagggataaagttctcatcaagaaggatattgtggggcttgatatcaaaatgtaaaat 215  Q
    |    || |||| ||||||||| | ||||||||||||||  || || ||||| ||||| ||||| ||||||||||| ||||||||||||||||| |||||    
T  9056705 tcgtaattggatatagctttgcgagtccaaagtcagatatctttggaataaaattctcgtcaagtaggatattgtgtggcttgatatcaaaatgcaaaat 9056804  T
Q  216 cttcatttcacatccgcggtgaagataaccaatcccacgagc 257  Q
     ||||||||||||||    || |||||| |||||||||||||    
T  9056805 tttcatttcacatccattatggagataatcaatcccacgagc 9056846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 16 - 248
Target Start/End: Complemental strand, 9152490 - 9152259
Alignment:
Q  16 acatcagccttataggaaactcccccaatatttttgtagaacaattctggagccatatatccaattgtacctcttgcagcagtcattgtgatgacgttgt 115  Q
    ||||| ||||||||||| |||||||| |||||| |||| ||||||||| ||||||||||||||||||||| |||||  ||||||||  |||  | | | |    
T  9152490 acatcggccttataggacactcccccgatatttatgtaaaacaattctagagccatatatccaattgtacatcttgatgcagtcata-tgacaatgctat 9152392  T
Q  116 tgtccatcggatgtagctttgccaatccaaagtcagatagtttagggataaagttctcatcaagaaggatattgtggggcttgatatcaaaatgtaaaat 215  Q
    | || | ||||| ||||||||| | |||||||||| | |  |  ||||||||||||||||| |   | ||||||||||||||||||||||||||||||||    
T  9152391 tctctagcggatatagctttgcgagtccaaagtcaaaaatctatgggataaagttctcatctaaccgaatattgtggggcttgatatcaaaatgtaaaat 9152292  T
Q  216 cttcatttcacatccgcggtgaagataaccaat 248  Q
    |||||||||||||||  |||| |||||| ||||    
T  9152291 cttcatttcacatccatggtggagataagcaat 9152259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 230
Target Start/End: Original strand, 9319946 - 9320160
Alignment:
Q  16 acatcagccttataggaaactcccccaatatttttgtagaacaattctggagccatatatccaattgtacctcttgcagcagtcattgtgatgacgttgt 115  Q
    ||||||||||| ||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||| |  ||||  | | |      
T  9319946 acatcagccttgtaggatactcctccaatatttttgtagaacaattcaggagccatatatccaattgttcctcttgctgcagttaaagtgacaatgctaa 9320045  T
Q  116 tgtccatcggatgtagctttgccaatccaaagtcagatagtttagggataaagttctcatcaagaaggatattgtggggcttgatatcaaaatgtaaaat 215  Q
    | ||  | ||||  ||||| || |  |||||||| || | ||| |||||||||||||||||||||||||| || |||||||||||||||||||| |||||    
T  9320046 tctcattaggataaagcttagcaagaccaaagtctgaaactttggggataaagttctcatcaagaaggatgttatggggcttgatatcaaaatgcaaaat 9320145  T
Q  216 cttcatttcacatcc 230  Q
     | ||| ||||||||    
T  9320146 ttgcatgtcacatcc 9320160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 230
Target Start/End: Original strand, 9350263 - 9350477
Alignment:
Q  16 acatcagccttataggaaactcccccaatatttttgtagaacaattctggagccatatatccaattgtacctcttgcagcagtcattgtgatgacgttgt 115  Q
    ||||||||||| ||||| ||||| |||||||||||||||||||| || |||||||||||||||||||| |||||||| ||||| |  ||||  | | |      
T  9350263 acatcagccttgtaggatactcctccaatatttttgtagaacaactcaggagccatatatccaattgttcctcttgctgcagttaaagtgacaatgctaa 9350362  T
Q  116 tgtccatcggatgtagctttgccaatccaaagtcagatagtttagggataaagttctcatcaagaaggatattgtggggcttgatatcaaaatgtaaaat 215  Q
    | ||  | ||||  ||||| || |  |||||||| || | ||| |||||||||||||||||||||||||| || |||||||||||||||||||| |||||    
T  9350363 tctcattaggataaagcttagcaagaccaaagtctgaaactttggggataaagttctcatcaagaaggatgttatggggcttgatatcaaaatgcaaaat 9350462  T
Q  216 cttcatttcacatcc 230  Q
     | ||| ||||||||    
T  9350463 ttgcatgtcacatcc 9350477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 16 - 230
Target Start/End: Complemental strand, 9318356 - 9318142
Alignment:
Q  16 acatcagccttataggaaactcccccaatatttttgtagaacaattctggagccatatatccaattgtacctcttgcagcagtcattgtgatgacgttgt 115  Q
    ||||| ||||| ||||| ||||| ||||||||||||||||||||||| |||||||| ||||||||||| ||||| || ||||| |  ||||  | | |      
T  9318356 acatcggccttgtaggatactcctccaatatttttgtagaacaattcaggagccatgtatccaattgttcctctagctgcagttaaagtgacaatgctaa 9318257  T
Q  116 tgtccatcggatgtagctttgccaatccaaagtcagatagtttagggataaagttctcatcaagaaggatattgtggggcttgatatcaaaatgtaaaat 215  Q
    ||||  | ||||  ||||||||||  |||||||| || | ||| || ||||||||||||||||||||||| || |||||||||||||||||||| || ||    
T  9318256 tgtcatttggataaagctttgccagaccaaagtctgaaactttgggaataaagttctcatcaagaaggatgttatggggcttgatatcaaaatgcaagat 9318157  T
Q  216 cttcatttcacatcc 230  Q
     | ||| ||||||||    
T  9318156 ttgcatgtcacatcc 9318142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 8932145 - 8932229
Alignment:
Q  16 acatcagccttataggaaactcccccaatatttttgtagaacaattctggagccatatatccaattgtacctcttgcagcagtca 100  Q
    ||||| |||||||||||||||   |||||||||||||||||||||||||| ||||| || |||||||| ||||||||||||||||    
T  8932145 acatcggccttataggaaactttaccaatatttttgtagaacaattctggtgccatgtaaccaattgttcctcttgcagcagtca 8932229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 8942061 - 8942146
Alignment:
Q  16 acatcagccttataggaaactcccccaatatttttgtagaacaattctggagccatatatccaattgtacctcttgcagcagtcat 101  Q
    ||||| || ||||||||||||   |||||||||||||||||||||||||| ||||| || |||||||||||||| ||||| |||||    
T  8942061 acatcggctttataggaaactttaccaatatttttgtagaacaattctggtgccatgtaaccaattgtacctctagcagcggtcat 8942146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 8920740 - 8920824
Alignment:
Q  16 acatcagccttataggaaactcccccaatatttttgtagaacaattctggagccatatatccaattgtacctcttgcagcagtca 100  Q
    ||||| ||||||||||| |||   |||||||||||||||||||| ||||| ||||| || |||||||| ||||||||||||||||    
T  8920740 acatcggccttataggagactttaccaatatttttgtagaacaactctggtgccatgtaaccaattgttcctcttgcagcagtca 8920824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 8956067 - 8956151
Alignment:
Q  16 acatcagccttataggaaactcccccaatatttttgtagaacaattctggagccatatatccaattgtacctcttgcagcagtca 100  Q
    ||||| |||||||||||||||   ||||||||||||||||| ||||| |||||||| || |||||||| ||||||||||| ||||    
T  8956067 acatcggccttataggaaactttaccaatatttttgtagaataattccggagccatgtaaccaattgttcctcttgcagccgtca 8956151  T

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Target: chr1; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 215
Target Start/End: Original strand, 9399676 - 9399875
Alignment:
Q  16 acatcagccttataggaaactcccccaatatttttgtagaacaattctggagccatatatccaattgtacctcttgcagcagtcattgtgatgacgttgt 115  Q
    |||||||||||||| || | |||||||||||||| | |||||| ||| |||||||| || |||||||| |||||||| ||  |||  |||   | | | |    
T  9399676 acatcagccttatatgatattcccccaatattttggaagaacagttcaggagccatgtaaccaattgttcctcttgctgccatcaaagtggcaatgcttt 9399775  T
Q  116 tgtccatcggatgtagctttgccaatccaaagtcagatagtttagggataaagttctcatcaagaaggatattgtggggcttgatatcaaaatgtaaaat 215  Q
    |||| || ||||  |||||||| |  |||||||| || | ||||||||| || || || ||||||||||| ||||| ||||| ||||||||||| |||||    
T  9399776 tgtcaataggataaagctttgcaagaccaaagtccgaaactttagggatgaaattttcgtcaagaaggatgttgtgaggcttaatatcaaaatgcaaaat 9399875  T

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Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 215
Target Start/End: Complemental strand, 9432880 - 9432704
Alignment:
Q  39 cccaatatttttgtagaacaattctggagccatatatccaattgtacctcttgcagcagtcattgtgatgacgttgttgtccatcggatgtagctttgcc 138  Q
    ||||||||||| |||||||||||| |||||||| || |||||||| |||||||| || ||||  |||   | | | ||||| || ||||  ||||||||     
T  9432880 cccaatattttggtagaacaattcaggagccatgtaaccaattgttcctcttgctgccgtcaaagtggcaatgcttttgtcaataggataaagctttgca 9432781  T
Q  139 aatccaaagtcagatagtttagggataaagttctcatcaagaaggatattgtggggcttgatatcaaaatgtaaaat 215  Q
    |  |||||||| || | ||||||||| || || || || |||||||| ||||| ||||| ||||||||||| |||||    
T  9432780 agaccaaagtccgaaactttagggatgaaattttcgtccagaaggatgttgtgaggcttaatatcaaaatgcaaaat 9432704  T

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Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 215
Target Start/End: Complemental strand, 9453867 - 9453691
Alignment:
Q  39 cccaatatttttgtagaacaattctggagccatatatccaattgtacctcttgcagcagtcattgtgatgacgttgttgtccatcggatgtagctttgcc 138  Q
    ||||||||||| |||||||||||| |||||||| || |||||||| |||||||| || ||||  | ||  | | | ||||| || ||||  ||||||||     
T  9453867 cccaatattttggtagaacaattcaggagccatgtaaccaattgttcctcttgctgctgtcaaagcgacaatgctattgtcaataggataaagctttgca 9453768  T
Q  139 aatccaaagtcagatagtttagggataaagttctcatcaagaaggatattgtggggcttgatatcaaaatgtaaaat 215  Q
    |  ||||| || || | ||||||||| || || || ||||||||||| ||||| ||||| ||||||||||| |||||    
T  9453767 agaccaaaatctgaaactttagggatgaaattttcgtcaagaaggatgttgtgaggcttaatatcaaaatgcaaaat 9453691  T

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Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 142 - 230
Target Start/End: Complemental strand, 9254968 - 9254880
Alignment:
Q  142 ccaaagtcagatagtttagggataaagttctcatcaagaaggatattgtggggcttgatatcaaaatgtaaaatcttcatttcacatcc 230  Q
    |||||||| || | ||| ||| ||||||||||||| |||||||| || ||||||||||| |||||||| ||||| | |||||| |||||    
T  9254968 ccaaagtctgaaactttggggttaaagttctcatcgagaaggatgttatggggcttgatgtcaaaatgcaaaatttgcatttcgcatcc 9254880  T

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Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 9255094 - 9255018
Alignment:
Q  16 acatcagccttataggaaactcccccaatatttttgtagaacaattctggagccatatatccaattgtacctcttgc 92  Q
    ||||| ||||| || || ||||| |||||||||| |||||||||||| |||||||| ||||||||||| || |||||    
T  9255094 acatcggccttgtacgatactcctccaatattttggtagaacaattcaggagccatgtatccaattgtcccccttgc 9255018  T

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Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 9234125 - 9234070
Alignment:
Q  16 acatcagccttataggaaactcccccaatatttttgtagaacaattctggagccat 71  Q
    |||||||| || || || ||||| ||||||||||||||||||||||| ||||||||    
T  9234125 acatcagctttgtacgacactccaccaatatttttgtagaacaattcaggagccat 9234070  T

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Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 9384269 - 9384324
Alignment:
Q  16 acatcagccttataggaaactcccccaatatttttgtagaacaattctggagccat 71  Q
    ||||||||||| || || ||||| ||||||||||||||||||| ||| ||||||||    
T  9384269 acatcagccttgtaagacactccaccaatatttttgtagaacagttcaggagccat 9384324  T

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Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 98
Target Start/End: Original strand, 10974314 - 10974372
Alignment:
Q  40 ccaatatttttgtagaacaattctggagccatatatccaattgtacctcttgcagcagt 98  Q
    ||||||||| ||||||||| ||| || ||||| |||||||| || ||||||||||||||    
T  10974314 ccaatatttctgtagaacagttcaggggccatgtatccaatcgttcctcttgcagcagt 10974372  T

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Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 9488612 - 9488673
Alignment:
Q  34 actcccccaatatttttgtagaacaattctggagccatatatccaattgtacctcttgcagc 95  Q
    ||||| |||||||| || |||||||||||||| ||||| ||||| || || |||||||||||    
T  9488612 actcctccaatattcttatagaacaattctggtgccatgtatcccatagttcctcttgcagc 9488673  T

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Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 215
Target Start/End: Complemental strand, 15927262 - 15927063
Alignment:
Q  16 acatcagccttataggaaactcccccaatatttttgtagaacaattctggagccatatatccaattgtacctcttgcagcagtcattgtgatgacgttgt 115  Q
    ||||| |||||||| |||||||| ||||||||||||||||| ||||| |||||||| |||||||| || |||||||| ||||| |  ||||  |   |      
T  15927262 acatcggccttatacgaaactcctccaatatttttgtagaataattcaggagccatgtatccaatcgttcctcttgctgcagttaaagtgacaatactaa 15927163  T
Q  116 tgtccatcggatgtagctttgccaatccaaagtcagatagtttagggataaagttctcatcaagaaggatattgtggggcttgatatcaaaatgtaaaat 215  Q
    | ||  | ||||  |||||||| |  |||||||| || | ||| |||||||||||||||||||||||||| || ||||||||||| |||||||| |||||    
T  15927162 tctcattaggataaagctttgcaagaccaaagtcggaaactttggggataaagttctcatcaagaaggatgttatggggcttgatgtcaaaatgcaaaat 15927063  T

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Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 230
Target Start/End: Original strand, 9159636 - 9159850
Alignment:
Q  16 acatcagccttataggaaactcccccaatatttttgtagaacaattctggagccatatatccaattgtacctcttgcagcagtcattgtgatgacgttgt 115  Q
    ||||||||||| || || ||||| |||||||||||||||||||| || ||||||||||| |||||||| |||||||| ||||| |   | |  |   | |    
T  9159636 acatcagccttgtatgatactccaccaatatttttgtagaacaactcgggagccatataaccaattgttcctcttgctgcagttaaatttacaatactat 9159735  T
Q  116 tgtccatcggatgtagctttgccaatccaaagtcagatagtttagggataaagttctcatcaagaaggatattgtggggcttgatatcaaaatgtaaaat 215  Q
    ||||  | ||||  |||||||| |  ||||||||||| |  || |||||||||||||| |||||||| || || |||||||||||||||||||| || ||    
T  9159736 tgtcattaggataaagctttgcaagaccaaagtcagaaaccttggggataaagttctcgtcaagaagtatgttatggggcttgatatcaaaatgcaagat 9159835  T
Q  216 cttcatttcacatcc 230  Q
     | ||| ||||||||    
T  9159836 ttgcatgtcacatcc 9159850  T

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