View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11003_high_2 (Length: 359)
Name: NF11003_high_2
Description: NF11003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11003_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 18 - 347
Target Start/End: Complemental strand, 34426153 - 34425823
Alignment:
| Q |
18 |
atatcaattattatgttactcattcagtgtgttttgtcttgcatttcaggcgatggttataaggtattagtgaacatgctaaaatatattggtcccactc |
117 |
Q |
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| T |
34426153 |
atatcaattattatgttactcattcagtgtgttttgtcttgcatttcaggtgatggttataaggtattagtgaacatgctaaaatatattggtcccactc |
34426054 |
T |
|
| Q |
118 |
atatagttaagataggcatatccactgatctgaagaatttacctgttggaaagttcgggtcaaatgggaagaatgacagaagagttaaattgattgagat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34426053 |
atatagttaagataggcatatccactgatctgaagaatatacctgttggaaagttcgggtcaaatgggaagaatgacagaagagttaaattgattgagat |
34425954 |
T |
|
| Q |
218 |
atatccagctcgtcaggactcatcgtaagcccaaatgttatatgttaccattttcagctgctagtttatttcaatattttttagactt-aaagtattata |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
34425953 |
atatccagctcgtcaggactcatcgtaagcccaaatgttatatgttaccattttcagctgctagtttatttcaatattttttagacttaaaagtattata |
34425854 |
T |
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| Q |
317 |
gaataacagaatatccctacttgtttcccta |
347 |
Q |
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|||||||| |||||||||||||||||||||| |
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| T |
34425853 |
gaataacaaaatatccctacttgtttcccta |
34425823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 18 - 145
Target Start/End: Complemental strand, 34419007 - 34418880
Alignment:
| Q |
18 |
atatcaattattatgttactcattcagtgtgttttgtcttgcatttcaggcgatggttataaggtattagtgaacatgctaaaatatattggtcccactc |
117 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||| | ||||||||| ||||||||||||||||||||||||||| |
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| T |
34419007 |
atatcaattattatgttactcattcagttggttttgtcttgcatttcaggtgttggttatgaagtattagtggacatgctaaaatatattggtcccactc |
34418908 |
T |
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| Q |
118 |
atatagttaagataggcatatccactga |
145 |
Q |
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|| | |||||||||| | |||||||||| |
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| T |
34418907 |
atgttgttaagatagacttatccactga |
34418880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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