View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11003_high_7 (Length: 238)
Name: NF11003_high_7
Description: NF11003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11003_high_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 14 - 221
Target Start/End: Original strand, 45492901 - 45493108
Alignment:
| Q |
14 |
cagagagacagagagaaacaaaatcaaaggcaaaaaccaaaccagaatattgtgtttaaaaagtcgatgcatgtttaccttaatcaacgtatggtatgtg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45492901 |
cagagagacagagagaaacaaaatcaaaggcaaaaaccaaaccagaatattgtgtttaaaaagtcgatgcatgtttaccttaatcaacgtatggtatgtg |
45493000 |
T |
|
| Q |
114 |
gctaacctctgcggacggtgagttttgaagcaaaaagtcggctgagatacggaaaacaggtatagaacacaaaggtacgaatgattttactttcagtgac |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45493001 |
gctaacctctgcggacggtgagttttgaagcaaaaagtcggctgagatacggaacacaggtatagaacacaaaggtacgaatgattttactttcagtgac |
45493100 |
T |
|
| Q |
214 |
ttcaaatt |
221 |
Q |
| |
|
|||||||| |
|
|
| T |
45493101 |
ttcaaatt |
45493108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 14 - 221
Target Start/End: Original strand, 14287760 - 14287966
Alignment:
| Q |
14 |
cagagagacagagagaaacaaaatcaaaggcaaaaaccaaaccagaatattgtgtttaaaaagtcgatgcatgtttaccttaatcaacgtatggtatgtg |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
14287760 |
cagagagacagagagaaacaaaatcaaaggcgaaaaccaaaccagaatattgtgtttaaaaagtc-atgcatgtttaccttaatcaacatatggtatgtg |
14287858 |
T |
|
| Q |
114 |
gctaacctctgcggacggtgagttttgaagcaaaaagtcggctgagatacggaaaacaggtatagaacacaaaggtacgaatgattttactttcagtgac |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14287859 |
gctaacctctgcggacggtgagttttgaagcaaaaagtcggctgagatacggaacacaggtatagaacacaaaggtacgaatgattttactttcagtgac |
14287958 |
T |
|
| Q |
214 |
ttcaaatt |
221 |
Q |
| |
|
|||||||| |
|
|
| T |
14287959 |
ttcaaatt |
14287966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University