View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11003_low_1 (Length: 519)
Name: NF11003_low_1
Description: NF11003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11003_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 1 - 513
Target Start/End: Complemental strand, 47457211 - 47456698
Alignment:
| Q |
1 |
actatatatatgtgactgtctctgaacctccatggatctagtaatcaacacaacaccaaatgtaatatgtggtttactattgcataggtatctcaaggat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47457211 |
actatatatatgtgactgtctctgaacctccatggatatagtaatcaacacaacaccaaatgtaatatgtggtttactattgcataggtatctcaaggat |
47457112 |
T |
|
| Q |
101 |
cacacaattttttcacaatcctccaccagtagtattacaattgaactttttaaccttatcaatacatctgtattatacctgttctgatgcagtattgtcc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
47457111 |
cacacaattttttcacaatcctccaccagtagtattacaattgaactttttaaccttctcaatacatctgcattatacctgttctgatgcagtattgtcc |
47457012 |
T |
|
| Q |
201 |
cccttgttagtaacaacaaattttcattcccaaaaagcatggtagaaagcatacccaaatctgtcataccgaattataaattcatggttaccttgagttc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47457011 |
cccttgttagtaacaacaaattttcattcccaaaaagcatggtagagagcatacccaaatctgtcataccgaattataaattcatggttaccttgagttc |
47456912 |
T |
|
| Q |
301 |
ctcaatgtcatctaaattatttataggtacaagcaagcaggtcatcaacatcttagctttgttctgcaccctcatataaacaacatgaactactgcagaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
47456911 |
ctcaatgtcatctaaattatttataggtacaagcaagcaggtcatcaacatcttagctttgttctgcaccctcacataaacaacatgaactactgcagaa |
47456812 |
T |
|
| Q |
401 |
tgggagaatcgttgctggaacaagaaagagtctatcattttgt-ttttaagtctttggtccttgttttatcccatataaagctatcttcagcctatacac |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47456811 |
tgggagaatcgttgctggaacaagaaagagtctatcattttgttttttaagtctttggtccttgttttatcccatataaagctatcttcagcctatacac |
47456712 |
T |
|
| Q |
500 |
catgtctctgcttc |
513 |
Q |
| |
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||||||| |||||| |
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| T |
47456711 |
catgtctttgcttc |
47456698 |
T |
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