View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11003_low_3 (Length: 279)
Name: NF11003_low_3
Description: NF11003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11003_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 39 - 269
Target Start/End: Complemental strand, 47457418 - 47457188
Alignment:
| Q |
39 |
gacaagactatcattaataactacttcttcaagaaccaagagactgaggcatttagaagcttaaacatatagcaaatagcatttttccactcaactttat |
138 |
Q |
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| T |
47457418 |
gacaagactatcactaataattacttcttcaagaaccaagagactgaggcatttagaagcttaaacatatagcaaatagcatttttccactcaactttat |
47457319 |
T |
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| Q |
139 |
catcacatcagtcataatcagagtatcgaattaattctaggctcgtatgatctaaccattttagaaatcatatattcaccaaaatccactcttcctttta |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47457318 |
catcacatcagtcataatcagagtatcgaattaattctaggctcgtatgatctaaccattttagaaatcatatattcaccaaaatccactcttcctttta |
47457219 |
T |
|
| Q |
239 |
gtgacctactatatatatgtgactgtctctg |
269 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
47457218 |
gtgacctactatatatatgtgactgtctctg |
47457188 |
T |
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