View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11003_low_4 (Length: 266)
Name: NF11003_low_4
Description: NF11003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11003_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 258
Target Start/End: Complemental strand, 48698425 - 48698185
Alignment:
| Q |
19 |
taatcaacattcattctttacaacatcacgtgtttgcagccattttagaattttccaaattcgttgtggaacttgctctcctataacataactcctacat |
118 |
Q |
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| T |
48698425 |
taatcaacattcattctttacaacatcacatgtttgcagccattttagaattttccaaattcgttgtggaacttgctctcctataacataactcctacat |
48698326 |
T |
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| Q |
119 |
gttgtatttttgggtgcaaaacatactag-nnnnnnnatccatatagaatttcatataactattaagagaaatagttcatatagtaaataaatgcaataa |
217 |
Q |
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| T |
48698325 |
gttgtatttttgggtgcaaaacatactagttttttttatccatatagaatttcatataactattaagagaaaaagttcatatagtaaataaatgcaataa |
48698226 |
T |
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| Q |
218 |
aatatagattccgattgatgttaacagtactgattcttctc |
258 |
Q |
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| T |
48698225 |
aatatagattccgattgatgttaacagtactgattcttctc |
48698185 |
T |
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