View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11004_high_3 (Length: 234)

Name: NF11004_high_3
Description: NF11004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11004_high_3
NF11004_high_3
[»] chr2 (14 HSPs)
chr2 (14-215)||(25231963-25232164)
chr2 (34-215)||(25225678-25225859)
chr2 (15-199)||(19912243-19912430)
chr2 (68-166)||(45276370-45276468)
chr2 (70-178)||(21294945-21295053)
chr2 (99-178)||(21289647-21289726)
chr2 (12-45)||(636259-636292)
chr2 (12-45)||(1525619-1525652)
chr2 (12-45)||(7910112-7910145)
chr2 (12-45)||(14898760-14898793)
chr2 (12-45)||(22430325-22430358)
chr2 (12-45)||(22435919-22435952)
chr2 (12-45)||(43776968-43777001)
chr2 (146-206)||(19089605-19089665)
[»] chr6 (3 HSPs)
chr6 (15-209)||(19441151-19441345)
chr6 (146-209)||(17275106-17275169)
chr6 (12-45)||(14855914-14855947)
[»] chr1 (14 HSPs)
chr1 (14-194)||(29547720-29547900)
chr1 (34-194)||(29530085-29530245)
chr1 (67-209)||(18640511-18640652)
chr1 (67-209)||(11444043-11444185)
chr1 (68-162)||(28201703-28201798)
chr1 (67-144)||(32808797-32808873)
chr1 (67-210)||(11441673-11441816)
chr1 (74-156)||(18643264-18643346)
chr1 (148-209)||(15552966-15553026)
chr1 (71-164)||(40279224-40279318)
chr1 (82-166)||(27417459-27417544)
chr1 (146-209)||(27317702-27317764)
chr1 (12-45)||(27179119-27179152)
chr1 (13-45)||(33493086-33493118)
[»] chr5 (15 HSPs)
chr5 (18-220)||(24213290-24213491)
chr5 (68-210)||(24228293-24228435)
chr5 (69-140)||(40786653-40786726)
chr5 (67-209)||(31109011-31109152)
chr5 (67-162)||(29681702-29681803)
chr5 (68-209)||(17627200-17627340)
chr5 (161-220)||(40786726-40786785)
chr5 (69-161)||(35074182-35074274)
chr5 (18-162)||(29948472-29948620)
chr5 (69-164)||(16633330-16633425)
chr5 (71-185)||(19479499-19479614)
chr5 (146-209)||(28663640-28663703)
chr5 (146-203)||(19699489-19699546)
chr5 (12-45)||(28367130-28367163)
chr5 (12-45)||(30957746-30957779)
[»] chr3 (16 HSPs)
chr3 (35-211)||(13639591-13639766)
chr3 (67-207)||(20458775-20458914)
chr3 (67-166)||(21587188-21587287)
chr3 (69-206)||(20463141-20463278)
chr3 (14-178)||(44122042-44122209)
chr3 (70-199)||(44126751-44126880)
chr3 (67-143)||(7642324-7642399)
chr3 (11-45)||(3110658-3110692)
chr3 (128-166)||(13100788-13100826)
chr3 (14-55)||(3170285-3170326)
chr3 (12-45)||(9724772-9724805)
chr3 (12-45)||(13990809-13990842)
chr3 (126-203)||(19647374-19647450)
chr3 (69-134)||(20459115-20459180)
chr3 (12-45)||(23344353-23344386)
chr3 (12-45)||(40800787-40800820)
[»] chr8 (5 HSPs)
chr8 (68-209)||(29185548-29185689)
chr8 (146-209)||(17703045-17703108)
chr8 (99-169)||(44711346-44711417)
chr8 (12-45)||(12756311-12756344)
chr8 (99-144)||(28621788-28621833)
[»] scaffold0066 (1 HSPs)
scaffold0066 (14-187)||(11574-11751)
[»] chr4 (12 HSPs)
chr4 (67-161)||(18902124-18902218)
chr4 (65-178)||(12746585-12746698)
chr4 (67-163)||(26654459-26654555)
chr4 (69-166)||(27360214-27360311)
chr4 (146-207)||(28874228-28874288)
chr4 (69-162)||(56341851-56341944)
chr4 (67-162)||(7895115-7895210)
chr4 (71-185)||(20275931-20276046)
chr4 (67-166)||(51700330-51700429)
chr4 (12-45)||(6162225-6162258)
chr4 (69-165)||(52311286-52311383)
chr4 (13-45)||(53982073-53982105)
[»] chr7 (7 HSPs)
chr7 (69-209)||(35338979-35339120)
chr7 (67-160)||(42129526-42129619)
chr7 (69-207)||(7578557-7578695)
chr7 (14-209)||(23818703-23818897)
chr7 (148-209)||(20125314-20125374)
chr7 (82-137)||(25617059-25617114)
chr7 (12-45)||(32148454-32148487)
[»] scaffold0062 (2 HSPs)
scaffold0062 (70-177)||(19856-19963)
scaffold0062 (70-177)||(30024-30131)
[»] scaffold0248 (1 HSPs)
scaffold0248 (146-199)||(16218-16271)
[»] scaffold0004 (1 HSPs)
scaffold0004 (12-45)||(345820-345853)


Alignment Details
Target: chr2 (Bit Score: 138; Significance: 3e-72; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 14 - 215
Target Start/End: Original strand, 25231963 - 25232164
Alignment:
Q  14 gatggacatccaaaggggagtgttatgaatatcagtggatgtccatgtcgttcaatcttccaccttcctataacctccattagtaaatgtatggttagtg 113  Q
    |||||| |||||| ||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  25231963 gatggatatccaagggggaatgttatgaatattagtggatgtccatgtccttcaatcttccaccttcctataactcccattagtaaatgtatggttagtg 25232062  T
Q  114 gtccttaattggtttgatcattcacttgctcgtttgtatcctataaataggacctatattgtaatataaagaacgcacttgtgaagtaatacaatactct 213  Q
    ||||||||||||||||||||||||||||||| ||||| ||| ||||||||||| ||||||||||| |||||||| |||||| |||| |||||||||| ||    
T  25232063 gtccttaattggtttgatcattcacttgctcatttgtgtcccataaataggacatatattgtaatgtaaagaacacacttgagaagcaatacaatacact 25232162  T
Q  214 ct 215  Q
    ||    
T  25232163 ct 25232164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 34 - 215
Target Start/End: Original strand, 25225678 - 25225859
Alignment:
Q  34 tgttatgaatatcagtggatgtccatgtcgttcaatcttccaccttcctataacctccattagtaaatgtatggttagtggtccttaattggtttgatca 133  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||| ||||||   ||||||||||||||||||||||| | |||||||||||||||||    
T  25225678 tgttatgaatattagtggatgtccatgtccttcaatcttccaccttcatataactctcattagtaaatgtatggttagtgattcttaattggtttgatca 25225777  T
Q  134 ttcacttgctcgtttgtatcctataaataggacctatattgtaatataaagaacgcacttgtgaagtaatacaatactctct 215  Q
    |||| ||| || ||||| ||||||||||||||| | ||||||||| |||||||| || ||| |||| |||||||||| ||||    
T  25225778 ttcatttgttcatttgtgtcctataaataggacatgtattgtaatgtaaagaacacagttgagaagcaatacaatacactct 25225859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 15 - 199
Target Start/End: Original strand, 19912243 - 19912430
Alignment:
Q  15 atggacatccaaaggggagtgttatgaata------tcagtggatgtccatgtcgttcaatcttccaccttcctataacctccattagtaaatgtatggt 108  Q
    |||||||||||| |||||||||||||||||      | ||||||||||||   |  | |||||||||||||||||||||| | |||| | ||||||||||    
T  19912243 atggacatccaagggggagtgttatgaataatagacttagtggatgtcca---cccttaatcttccaccttcctataacccctattattgaatgtatggt 19912339  T
Q  109 tagtggtccttaattggtttgatcattcacttgctcgtttgtatcctataaataggacctatattgtaatataaagaacgcacttgtgaag 199  Q
    |||| ||||||||||| |||||||| |||||||||| ||||| |||||||||||||||||||||| |||| ||||  |  |||||||||||    
T  19912340 tagtagtccttaattgctttgatcactcacttgctcatttgtgtcctataaataggacctatattataatgtaaaatatacacttgtgaag 19912430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 68 - 166
Target Start/End: Original strand, 45276370 - 45276468
Alignment:
Q  68 atcttccaccttcctataacctccattagtaaatgtatggttagtggtccttaattggtttgatcattcacttgctcgtttgtatcctataaataggac 166  Q
    |||||||||||||||||||||    ||||| |||||||||||||||||||||||| | ||||| ||||||||| ||| ||||| |||||||||||||||    
T  45276370 atcttccaccttcctataacccatgttagtgaatgtatggttagtggtccttaatagttttgaccattcacttactcatttgtgtcctataaataggac 45276468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 70 - 178
Target Start/End: Complemental strand, 21295053 - 21294945
Alignment:
Q  70 cttccaccttcctataacctccattagtaaatgtatggttagtggtccttaattggtttgatcattcacttgctcgtttgtatcctataaataggaccta 169  Q
    ||||||||||| ||| ||| | |||||| |||||||  ||| |||||||||||   ||||||||||||||||||| ||||||||||||||||||||| ||    
T  21295053 cttccaccttcttatcaccactattagtgaatgtatatttaatggtccttaatgactttgatcattcacttgctcatttgtatcctataaataggactta 21294954  T
Q  170 tattgtaat 178  Q
    | |||||||    
T  21294953 tgttgtaat 21294945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 99 - 178
Target Start/End: Complemental strand, 21289726 - 21289647
Alignment:
Q  99 aatgtatggttagtggtccttaattggtttgatcattcacttgctcgtttgtatcctataaataggacctatattgtaat 178  Q
    |||||||| ||| || |||||||||  ||||||||||||||||||| ||||| ||||||||||||||| |||||||||||    
T  21289726 aatgtatgcttaatgatccttaattactttgatcattcacttgctcatttgtgtcctataaataggacttatattgtaat 21289647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 45
Target Start/End: Original strand, 636259 - 636292
Alignment:
Q  12 gagatggacatccaaaggggagtgttatgaatat 45  Q
    ||||||||||||||| ||||||||||||||||||    
T  636259 gagatggacatccaagggggagtgttatgaatat 636292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 45
Target Start/End: Original strand, 1525619 - 1525652
Alignment:
Q  12 gagatggacatccaaaggggagtgttatgaatat 45  Q
    ||||||||||||||| ||||||||||||||||||    
T  1525619 gagatggacatccaagggggagtgttatgaatat 1525652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 45
Target Start/End: Complemental strand, 7910145 - 7910112
Alignment:
Q  12 gagatggacatccaaaggggagtgttatgaatat 45  Q
    ||||||||||||||| ||||||||||||||||||    
T  7910145 gagatggacatccaagggggagtgttatgaatat 7910112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 45
Target Start/End: Original strand, 14898760 - 14898793
Alignment:
Q  12 gagatggacatccaaaggggagtgttatgaatat 45  Q
    ||||||||||||||| ||||||||||||||||||    
T  14898760 gagatggacatccaagggggagtgttatgaatat 14898793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 45
Target Start/End: Original strand, 22430325 - 22430358
Alignment:
Q  12 gagatggacatccaaaggggagtgttatgaatat 45  Q
    ||||||||||||||| ||||||||||||||||||    
T  22430325 gagatggacatccaagggggagtgttatgaatat 22430358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 45
Target Start/End: Original strand, 22435919 - 22435952
Alignment:
Q  12 gagatggacatccaaaggggagtgttatgaatat 45  Q
    ||||||||||||||| ||||||||||||||||||    
T  22435919 gagatggacatccaagggggagtgttatgaatat 22435952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 45
Target Start/End: Original strand, 43776968 - 43777001
Alignment:
Q  12 gagatggacatccaaaggggagtgttatgaatat 45  Q
    ||||||||||||||| ||||||||||||||||||    
T  43776968 gagatggacatccaagggggagtgttatgaatat 43777001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 206
Target Start/End: Original strand, 19089605 - 19089665
Alignment:
Q  146 tttgtatcctataaataggacctatattgtaatataaagaacgcacttgtgaagtaataca 206  Q
    ||||| || |||||||||||| ||||||  ||| ||||||||||||||| |||| ||||||    
T  19089605 tttgtgtcatataaataggacttatatttcaatgtaaagaacgcacttgagaagcaataca 19089665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 15 - 209
Target Start/End: Complemental strand, 19441345 - 19441151
Alignment:
Q  15 atggacatccaaaggggagtgttatgaatatcagtggatgtccatgtcgttcaatcttccaccttcctataacctccattagtaaatgtatggttagtgg 114  Q
    |||||||||||| |||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||| ||||| |||||| ||||||||||||    
T  19441345 atggacatccaagggggagtgttatgaatattagtggatgtctatgtccttcaatcttccaccttcctataacccccattggtaaatctatggttagtgg 19441246  T
Q  115 tccttaattggtttgatcattcacttgctcgtttgtatcctataaataggacctatattgtaatataaagaacgcacttgtgaagtaatacaata 209  Q
    ||||||| |||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||| | || |||||||||||||||| ||||    
T  19441245 tccttaaatggtttgatcattcacttgctcatttgtgtcctataaataggacatatattgtaatataacggacacacttgtgaagtaatataata 19441151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 209
Target Start/End: Complemental strand, 17275169 - 17275106
Alignment:
Q  146 tttgtatcctataaataggacctatattgtaatataaagaacgcacttgtgaagtaatacaata 209  Q
    |||||||| ||||||||||||||| ||||  || |||||||| |||||| |||| |||||||||    
T  17275169 tttgtatcatataaataggacctacattgccatgtaaagaacacacttgagaagcaatacaata 17275106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 45
Target Start/End: Original strand, 14855914 - 14855947
Alignment:
Q  12 gagatggacatccaaaggggagtgttatgaatat 45  Q
    ||||||||||||||| ||||||||||||||||||    
T  14855914 gagatggacatccaagggggagtgttatgaatat 14855947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 129; Significance: 7e-67; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 14 - 194
Target Start/End: Original strand, 29547720 - 29547900
Alignment:
Q  14 gatggacatccaaaggggagtgttatgaatatcagtggatgtccatgtcgttcaatcttccaccttcctataacctccattagtaaatgtatggttagtg 113  Q
    ||||||||||||| |||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||| | ||||||||||||| ||||||||||    
T  29547720 gatggacatccaagggggagtgttatgaatattagttgatgtccatgtccttcaatcttccaccttcctataatccccattagtaaatgcatggttagtg 29547819  T
Q  114 gtccttaattggtttgatcattcacttgctcgtttgtatcctataaataggacctatattgtaatataaagaacgcacttg 194  Q
    |||||||||| |||||||||||||||||||| ||| | ||||||||||||||||||||||||||| |||||||| ||||||    
T  29547820 gtccttaatttgtttgatcattcacttgctcatttatgtcctataaataggacctatattgtaatgtaaagaacacacttg 29547900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 34 - 194
Target Start/End: Original strand, 29530085 - 29530245
Alignment:
Q  34 tgttatgaatatcagtggatgtccatgtcgttcaatcttccaccttcctataacctccattagtaaatgtatggttagtggtccttaattggtttgatca 133  Q
    |||||||||||| |||||||||||||||| ||||||||||||| ||||| ||| | |||| |||||||| ||||||||||||||||||||||||||||||    
T  29530085 tgttatgaatattagtggatgtccatgtccttcaatcttccactttcctgtaaaccccatcagtaaatgcatggttagtggtccttaattggtttgatca 29530184  T
Q  134 ttcacttgctcgtttgtatcctataaataggacctatattgtaatataaagaacgcacttg 194  Q
    ||||||||||| ||||| || |||||||||||||||||||||||| |||||||| ||||||    
T  29530185 ttcacttgctcatttgtgtcatataaataggacctatattgtaatgtaaagaacacacttg 29530245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 67 - 209
Target Start/End: Complemental strand, 18640652 - 18640511
Alignment:
Q  67 aatcttccaccttcctataacctccattagtaaatgtatggttagtggtccttaattggtttgatcattcacttgctcgtttgtatcctataaataggac 166  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||| |    
T  18640652 aatcttccaccttcctataacctc-attagtgaatgtatggttagtggtccttaattgctttgatcattcacttgctcatttgtgtcctataaataggtc 18640554  T
Q  167 ctatattgtaatataaagaacgcacttgtgaagtaatacaata 209  Q
     |||||  |||| |||||||| ||||| |||||||||||||||    
T  18640553 atatataataatgtaaagaacacacttttgaagtaatacaata 18640511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 67 - 209
Target Start/End: Complemental strand, 11444185 - 11444043
Alignment:
Q  67 aatcttccaccttcctataacctccattagtaaatgtatggttagtggtccttaattggtttgatcattcacttgctcgtttgtatcctataaataggac 166  Q
    ||||||||||||||||||||||   |||||| |||||||| ||| |||| ||||||   ||||||||||||||||||| ||||| |||||||||||||||    
T  11444185 aatcttccaccttcctataaccattattagtgaatgtatgcttaatggttcttaatgactttgatcattcacttgctcatttgtgtcctataaataggac 11444086  T
Q  167 ctatattgtaatataaagaacgcacttgtgaagtaatacaata 209  Q
     |||||| |||| | ||  || |||||||||||||||||||||    
T  11444085 ttatattataatgtgaattacacacttgtgaagtaatacaata 11444043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 68 - 162
Target Start/End: Complemental strand, 28201798 - 28201703
Alignment:
Q  68 atcttccaccttcctataacc-tccattagtaaatgtatggttagtggtccttaattggtttgatcattcacttgctcgtttgtatcctataaata 162  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||| ||| ||||||| |||||| ||||||||| || ||| | |||||||||||    
T  28201798 atcttccaccttcctataaccctccattagtgaatgtatggttagtagtctttaattgctttgataattcacttgttcatttatgtcctataaata 28201703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 67 - 144
Target Start/End: Original strand, 32808797 - 32808873
Alignment:
Q  67 aatcttccaccttcctataacctccattagtaaatgtatggttagtggtccttaattggtttgatcattcacttgctc 144  Q
    |||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||| |||||  ||||||||||||    
T  32808797 aatcttccaccttcctataacc-ccattagtgaatatatggttagtggtccttaattgatttgaatattcacttgctc 32808873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 67 - 210
Target Start/End: Complemental strand, 11441816 - 11441673
Alignment:
Q  67 aatcttccaccttcctataacctccattagtaaatgtatggttagtggtccttaattggtttgatcattcacttgctcgtttgtatcctataaataggac 166  Q
    |||||||||||||| | ||||| |  || || |||||||| ||| |||||||||||   ||||||| ||||||||||  ||||| ||||||||||| |||    
T  11441816 aatcttccaccttcgtgtaaccacttttggtgaatgtatgtttaatggtccttaatgactttgatctttcacttgcttatttgtgtcctataaatatgac 11441717  T
Q  167 ctatattgtaatataaagaacgcacttgtgaagtaatacaatac 210  Q
    |||||||||||| | ||  || ||||| ||| ||||||||||||    
T  11441716 ctatattgtaatgtgaattacacacttatgaggtaatacaatac 11441673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 74 - 156
Target Start/End: Complemental strand, 18643346 - 18643264
Alignment:
Q  74 caccttcctataacctccattagtaaatgtatggttagtggtccttaattggtttgatcattcacttgctcgtttgtatccta 156  Q
    |||||| |||||| | |||||||| | |||||||||||||||||||||||| |||||||||||| |||||| ||||| |||||    
T  18643346 cacctttctataatccccattagtgactgtatggttagtggtccttaattgctttgatcattcatttgctcatttgtgtccta 18643264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 209
Target Start/End: Original strand, 15552966 - 15553026
Alignment:
Q  148 tgtatcctataaataggacctatattgtaatataaagaacgcacttgtgaagtaatacaata 209  Q
    ||||||||||||||||||||||||||| ||| ||| | || |||||||||||||||||||||    
T  15552966 tgtatcctataaataggacctatattgcaatgtaatg-acacacttgtgaagtaatacaata 15553026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 164
Target Start/End: Complemental strand, 40279318 - 40279224
Alignment:
Q  71 ttccaccttcctataacctccattagtaaatgtatggttagtggtccttaattggtttgatcattcacttgctcgt-ttgtatcctataaatagg 164  Q
    |||||||||||||||||  |||||||||| || || |||||||| |||||||||  ||||||| |||||| ||| | |||| | |||||||||||    
T  40279318 ttccaccttcctataactcccattagtaagtgaatagttagtggaccttaattgccttgatcactcacttactcatcttgtgtactataaatagg 40279224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 166
Target Start/End: Complemental strand, 27417544 - 27417459
Alignment:
Q  82 tataacctccattagtaaatgtatggttagtggtccttaattggtttgatcattcacttgctcgt-ttgtatcctataaataggac 166  Q
    |||||| ||||| ||| |||| ||||||| |||| |||||||  ||||||||||||||| ||| | ||||||| ||||||||||||    
T  27417544 tataacttccataagtgaatggatggttaatggttcttaattaatttgatcattcacttactcatattgtatcttataaataggac 27417459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 209
Target Start/End: Original strand, 27317702 - 27317764
Alignment:
Q  146 tttgtatcctataaataggacctatattgtaatataaagaacgcacttgtgaagtaatacaata 209  Q
    ||||| ||||||||||| ||||||||||| ||| ||||| || |||||| ||||||||||||||    
T  27317702 tttgtgtcctataaatatgacctatattgaaatgtaaag-acacacttgagaagtaatacaata 27317764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 45
Target Start/End: Complemental strand, 27179152 - 27179119
Alignment:
Q  12 gagatggacatccaaaggggagtgttatgaatat 45  Q
    ||||||||||||||| ||||||||||||||||||    
T  27179152 gagatggacatccaagggggagtgttatgaatat 27179119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 33493118 - 33493086
Alignment:
Q  13 agatggacatccaaaggggagtgttatgaatat 45  Q
    |||||||||||||| ||||||||||||||||||    
T  33493118 agatggacatccaagggggagtgttatgaatat 33493086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 18 - 220
Target Start/End: Complemental strand, 24213491 - 24213290
Alignment:
Q  18 gacatccaaaggggagtgttatgaatatcagtggatgtccatgtcgttcaatcttccaccttcctataacctccattagtaaatgtatggttagtggtcc 117  Q
    ||||||||| ||||||||||| |||||| |||||||||| ||| | || |||||||||||||| ||||||||||||||||||||||||||||| |||||     
T  24213491 gacatccaagggggagtgttaagaatattagtggatgtcgatggcctt-aatcttccaccttcttataacctccattagtaaatgtatggttattggtct 24213393  T
Q  118 ttaattggtttgatcattcacttgctcgtttgtatcctataaataggacctatattgtaatataaagaacgcacttgtgaagtaatacaatactctctga 217  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||| ||  ||||||||||||||||||||| |||| |    
T  24213392 ttaattggtttgatcattcacttgctcatttgtgtcctataaataggacctatattgtaatgtaaagtacatacttgtgaagtaatacaatacactctta 24213293  T
Q  218 tgt 220  Q
    |||    
T  24213292 tgt 24213290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 68 - 210
Target Start/End: Complemental strand, 24228435 - 24228293
Alignment:
Q  68 atcttccaccttcctataacctccattagtaaatgtatggttagtggtccttaattggtttgatcattcacttgctcgtttgtatcctataaataggacc 167  Q
    |||||||||||||||||||||  ||||| || ||||||||||| ||||| |||||||||||||||||||||||||||  ||||||||||||||||||| |    
T  24228435 atcttccaccttcctataaccctcattaatatatgtatggttattggtctttaattggtttgatcattcacttgctcaattgtatcctataaataggatc 24228336  T
Q  168 tatattgtaatataaagaacgcacttgtgaagtaatacaatac 210  Q
    ||||||||||| ||||| || ||||||||||||||||||||||    
T  24228335 tatattgtaatgtaaagtacacacttgtgaagtaatacaatac 24228293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 69 - 140
Target Start/End: Original strand, 40786653 - 40786726
Alignment:
Q  69 tcttccaccttcctataacctccattagtaaatgtatggt--tagtggtccttaattggtttgatcattcactt 140  Q
    |||||||||||||||||||| |||||||||||||||||||  |||||||||||||||| |||||||||||||||    
T  40786653 tcttccaccttcctataacccccattagtaaatgtatggttatagtggtccttaattgatttgatcattcactt 40786726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 67 - 209
Target Start/End: Complemental strand, 31109152 - 31109011
Alignment:
Q  67 aatcttccaccttcctataacctccattagtaaatgtatggttagtggtccttaattggtttgatcattcacttgctcgtttgtatcctataaataggac 166  Q
    ||||| |||| |||||||||| || |||||| |||||||| ||| ||||| |||||   || |||||||||||||||| ||||| || |||||||||||     
T  31109152 aatctcccacattcctataacttctattagtgaatgtatgtttaatggtctttaatgacttcgatcattcacttgctcatttgtgtcatataaataggat 31109053  T
Q  167 ctatattgtaatataaagaacgcacttgtgaagtaatacaata 209  Q
    |||||||| ||| ||| | || |||||||||||||||| ||||    
T  31109052 ctatattgcaatgtaatg-acacacttgtgaagtaatataata 31109011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 67 - 162
Target Start/End: Complemental strand, 29681803 - 29681702
Alignment:
Q  67 aatcttccaccttcctataacctccattagtaaatgtat------ggttagtggtccttaattggtttgatcattcacttgctcgtttgtatcctataaa 160  Q
    ||||||||||||| ||||||||||||||||| |||||||      ||||||||||||| ||||| ||||||||| |||||| || ||||| |||||||||    
T  29681803 aatcttccacctttctataacctccattagtgaatgtatatgtatggttagtggtcctcaattgttttgatcatccacttgttcatttgtgtcctataaa 29681704  T
Q  161 ta 162  Q
    ||    
T  29681703 ta 29681702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 68 - 209
Target Start/End: Original strand, 17627200 - 17627340
Alignment:
Q  68 atcttccaccttcctataacctccattagtaaatgtatggttagtggtccttaattggtttgatcattcacttgctcgtttgtatcctataaataggacc 167  Q
    ||||| ||||||||||||| ||  || ||| ||| ||||||||||||||||||| |  |||||||||| | |||||| ||||| ||| ||||||| |||     
T  17627200 atctttcaccttcctataaacttaataagtgaatatatggttagtggtccttaaatattttgatcatttatttgctcatttgtgtccaataaatatgact 17627299  T
Q  168 tatattgtaatataaagaacgcacttgtgaagtaatacaata 209  Q
    |||||| || | ||| | || |||||||||||||||||||||    
T  17627300 tatattttagtgtaatg-acacacttgtgaagtaatacaata 17627340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 161 - 220
Target Start/End: Original strand, 40786726 - 40786785
Alignment:
Q  161 taggacctatattgtaatataaagaacgcacttgtgaagtaatacaatactctctgatgt 220  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||||| |||| ||||    
T  40786726 taggacctatattgtaatgtaaagaacacacttgtgaagtaatacaatacactcttatgt 40786785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 161
Target Start/End: Complemental strand, 35074274 - 35074182
Alignment:
Q  69 tcttccaccttcctataacctccattagtaaatgtatggttagtggtccttaattggtttgatcattcacttgctcgtttgtatcctataaat 161  Q
    |||| |||||||||||||    || |||| |||||||| ||||||||||||||||| |||||||||| | |||||| |||||||||| |||||    
T  35074274 tctttcaccttcctataattctcactagtgaatgtatgattagtggtccttaattgctttgatcattaatttgctcatttgtatcctgtaaat 35074182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 29948620 - 29948472
Alignment:
Q  18 gacatccaaaggggagtgttatgaata------tcagtggatgtccatgtcgttcaatcttccaccttcctataacctccattagtaaatgtatggttag 111  Q
    ||||||||| |||||||||||||||||      | |||||||||||||  | || |||||||||| |||||||||   | || ||| || | |||||||     
T  29948620 gacatccaagggggagtgttatgaataattaacttagtggatgtccat--cctt-aatcttccacattcctataagtcctataagtgaagggatggttac 29948524  T
Q  112 tggtccttaattggtttgatcattcacttgctc-gtttgtatcctataaata 162  Q
    ||||||||||||  ||||||||||||||||||| | ||||||||||||||||    
T  29948523 tggtccttaattactttgatcattcacttgctcagattgtatcctataaata 29948472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 164
Target Start/End: Complemental strand, 16633425 - 16633330
Alignment:
Q  69 tcttccaccttcctataacctccattagtaaatgtatggttagtggtccttaattggtttgatcattcacttgctc-gtttgtatcctataaatagg 164  Q
    |||||||||||||||||||| |||||||  | || || |||||||| ||||||||  ||||||||||||||| |||   |||| |||||||||||||    
T  16633425 tcttccaccttcctataacc-ccattagcgagtgaatagttagtggaccttaattactttgatcattcacttactcaacttgtgtcctataaatagg 16633330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 185
Target Start/End: Complemental strand, 19479614 - 19479499
Alignment:
Q  71 ttccaccttcctataacctccattagtaaatgtatggttagtggtccttaattggtttgatcattcacttgctcgt-ttgtatcctataaataggaccta 169  Q
    |||||||||||||||||   ||||||||| || || |||||||| |||||||||  ||||||| || ||| ||| | |||| | ||||||||||| | ||    
T  19479614 ttccaccttcctataactctcattagtaagtgaatagttagtggaccttaattgccttgatcactcgcttactcatcttgtgtactataaatagggctta 19479515  T
Q  170 tattgtaatataaaga 185  Q
    ||||||| | ||||||    
T  19479514 tattgtattgtaaaga 19479499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 209
Target Start/End: Complemental strand, 28663703 - 28663640
Alignment:
Q  146 tttgtatcctataaataggacctatattgtaatataaagaacgcacttgtgaagtaatacaata 209  Q
    |||||||||||||||||||| ||| ||||| || |||||||| |||||| |||  |||||||||    
T  28663703 tttgtatcctataaataggatctacattgtcatgtaaagaacacacttgagaaacaatacaata 28663640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 203
Target Start/End: Original strand, 19699489 - 19699546
Alignment:
Q  146 tttgtatcctataaataggacctatattgtaatataaagaacgcacttgtgaagtaat 203  Q
    ||||||||||||||||| ||| || ||||| || |||||||| ||||||| |||||||    
T  19699489 tttgtatcctataaatatgacatacattgtcatgtaaagaacacacttgtaaagtaat 19699546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 45
Target Start/End: Complemental strand, 28367163 - 28367130
Alignment:
Q  12 gagatggacatccaaaggggagtgttatgaatat 45  Q
    ||||||||||||||| ||||||||||||||||||    
T  28367163 gagatggacatccaagggggagtgttatgaatat 28367130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 45
Target Start/End: Complemental strand, 30957779 - 30957746
Alignment:
Q  12 gagatggacatccaaaggggagtgttatgaatat 45  Q
    ||||||||||||||| ||||||||||||||||||    
T  30957779 gagatggacatccaagggggagtgttatgaatat 30957746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 109; Significance: 6e-55; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 35 - 211
Target Start/End: Original strand, 13639591 - 13639766
Alignment:
Q  35 gttatgaatatcagtggatgtccatgtcgttcaatcttccaccttcctataacctccattagtaaatgtatggttagtggtccttaattggtttgatcat 134  Q
    ||||||||||| |||||||||| |||||  | ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  13639591 gttatgaatattagtggatgtctatgtccat-aatcttccaccttcctataaccttcgttagtaaatgtatggttagtggtccttaattggtttgatcat 13639689  T
Q  135 tcacttgctcgtttgtatcctataaataggacctatattgtaatataaagaacgcacttgtgaagtaatacaatact 211  Q
    |||||||||| |||||  | |||| ||||||||||||||||||| |||||||| ||||||||||  |||||||||||    
T  13639690 tcacttgctcatttgtgccttatacataggacctatattgtaatgtaaagaacacacttgtgaaacaatacaatact 13639766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 67 - 207
Target Start/End: Complemental strand, 20458914 - 20458775
Alignment:
Q  67 aatcttccaccttcctataacctccattagtaaatgtatggttagtggtccttaattggtttgatcattcacttgctcgtttgtatcctataaataggac 166  Q
    |||||||||||||||||||||| |||||||| ||||| |||||||||  |||||| || ||||||||||||||||||| |||||  ||||||||||| ||    
T  20458914 aatcttccaccttcctataacc-ccattagtgaatgtttggttagtgaaccttaaatgttttgatcattcacttgctcatttgtgacctataaatagaac 20458816  T
Q  167 ctatattgtaatataaagaacgcacttgtgaagtaatacaa 207  Q
    |||||||||||| |||||||| |||||| |||| |||||||    
T  20458815 ctatattgtaatgtaaagaacacacttgagaagcaatacaa 20458775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 67 - 166
Target Start/End: Complemental strand, 21587287 - 21587188
Alignment:
Q  67 aatcttccaccttcctataacctccattagtaaatgtatggttagtggtccttaattggtttgatcattcacttgctcgtttgtatcctataaataggac 166  Q
    |||||||||||||||||||||| |||||||| || |||||||||||| ||||||| || ||||||||||||||||||| ||||| |||||||||||||||    
T  21587287 aatcttccaccttcctataacccccattagtgaaagtatggttagtgatccttaactgctttgatcattcacttgctcatttgtgtcctataaataggac 21587188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 69 - 206
Target Start/End: Complemental strand, 20463278 - 20463141
Alignment:
Q  69 tcttccaccttcctataacctccattagtaaatgtatggttagtggtccttaattggtttgatcattcacttgctcgtttgtatcctataaataggacct 168  Q
    |||||| ||||||||||| | | |||||| |||||||||||||||| |||||| || | ||||||||||||||||| |||||   |||||||||| ||||    
T  20463278 tcttcctccttcctataatccctattagtgaatgtatggttagtggaccttaaatgctgtgatcattcacttgctcatttgtgatctataaatagaacct 20463179  T
Q  169 atattgtaatataaagaacgcacttgtgaagtaataca 206  Q
    |||||||||| |||||||| |||||| |||| ||||||    
T  20463178 atattgtaatgtaaagaacacacttgagaagcaataca 20463141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 14 - 178
Target Start/End: Complemental strand, 44122209 - 44122042
Alignment:
Q  14 gatggacatccaaaggggagtgttatgaata------tcagtggatgtccatgtcgttcaatcttccaccttcctataacctccattagtaaatgtatgg 107  Q
    ||||||||||||| |||||||||||||||||      | |||||||||||||  | || ||||||||||||||||||||||   |||||| ||||||||     
T  44122209 gatggacatccaagggggagtgttatgaataataagcttagtggatgtccat--cctt-aatcttccaccttcctataaccaatattagtgaatgtatgc 44122113  T
Q  108 ttagtggtccttaattggtttgatcattcacttgctcgtttgtatcctataaataggacctatattgtaat 178  Q
    ||| |||||||||||   ||||||||||||| ||||| ||||| ||||||||||||||||| |||||||||    
T  44122112 ttaatggtccttaatgactttgatcattcacctgctcatttgtgtcctataaataggacctgtattgtaat 44122042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 70 - 199
Target Start/End: Complemental strand, 44126880 - 44126751
Alignment:
Q  70 cttccaccttcctataacctccattagtaaatgtatggttagtggtccttaattggtttgatcattcacttgctcgtttgtatcctataaataggaccta 169  Q
    ||||||||||||||| ||| | || ||| |||||||| ||| |||||||||||   ||||||||||||||||||| ||||| ||||||||||||||||||    
T  44126880 cttccaccttcctattaccactatcagtgaatgtatgtttaatggtccttaatgactttgatcattcacttgctcatttgtgtcctataaataggaccta 44126781  T
Q  170 tattgtaatataaagaacgcacttgtgaag 199  Q
    ||||||||| | ||  || |||||||||||    
T  44126780 tattgtaatgtgaatgacacacttgtgaag 44126751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 67 - 143
Target Start/End: Original strand, 7642324 - 7642399
Alignment:
Q  67 aatcttccaccttcctataacctccattagtaaatgtatggttagtggtccttaattggtttgatcattcacttgct 143  Q
    |||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||  |||||||||| |||||||    
T  7642324 aatcttccaccttcctataacc-ccattagtgaatttatggttagtggtccttaattactttgatcatttacttgct 7642399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 45
Target Start/End: Complemental strand, 3110692 - 3110658
Alignment:
Q  11 tgagatggacatccaaaggggagtgttatgaatat 45  Q
    |||||||||||||||| ||||||||||||||||||    
T  3110692 tgagatggacatccaagggggagtgttatgaatat 3110658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 166
Target Start/End: Original strand, 13100788 - 13100826
Alignment:
Q  128 tgatcattcacttgctcgtttgtatcctataaataggac 166  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  13100788 tgatcattcacttgcttatttgtatcctataaataggac 13100826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 3170326 - 3170285
Alignment:
Q  14 gatggacatccaaaggggagtgttatgaatatcagtggatgt 55  Q
    ||||||||||||||||| ||||||||| |||| |||||||||    
T  3170326 gatggacatccaaagggaagtgttatgtatattagtggatgt 3170285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 45
Target Start/End: Complemental strand, 9724805 - 9724772
Alignment:
Q  12 gagatggacatccaaaggggagtgttatgaatat 45  Q
    ||||||||||||||| ||||||||||||||||||    
T  9724805 gagatggacatccaagggggagtgttatgaatat 9724772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 45
Target Start/End: Original strand, 13990809 - 13990842
Alignment:
Q  12 gagatggacatccaaaggggagtgttatgaatat 45  Q
    ||||||||||||||| ||||||||||||||||||    
T  13990809 gagatggacatccaagggggagtgttatgaatat 13990842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 203
Target Start/End: Original strand, 19647374 - 19647450
Alignment:
Q  126 tttgatcattcacttgctcgtttgtatcctataaataggacctatattgtaatataaagaacgcacttgtgaagtaat 203  Q
    ||||||||||||||| ||  |||||||||||||||||| ||  |  ||||||| ||||| || |||||||||||||||    
T  19647374 tttgatcattcacttacta-tttgtatcctataaatagaactcaagttgtaatgtaaaggacacacttgtgaagtaat 19647450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 134
Target Start/End: Original strand, 20459115 - 20459180
Alignment:
Q  69 tcttccaccttcctataacctccattagtaaatgtatggttagtggtccttaattggtttgatcat 134  Q
    |||||||||||||| ||| | || ||||| |||| ||||||||||| |||||| || |||||||||    
T  20459115 tcttccaccttcctgtaatccccgttagtgaatgcatggttagtggaccttaaatgctttgatcat 20459180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 45
Target Start/End: Original strand, 23344353 - 23344386
Alignment:
Q  12 gagatggacatccaaaggggagtgttatgaatat 45  Q
    ||||||||||||||| ||||||||||||||||||    
T  23344353 gagatggacatccaagggggagtgttatgaatat 23344386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 45
Target Start/End: Complemental strand, 40800820 - 40800787
Alignment:
Q  12 gagatggacatccaaaggggagtgttatgaatat 45  Q
    ||||||||||||||| ||||||||||||||||||    
T  40800820 gagatggacatccaagggggagtgttatgaatat 40800787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 68 - 209
Target Start/End: Complemental strand, 29185689 - 29185548
Alignment:
Q  68 atcttccaccttcctataacctccattagtaaatgtatggttagtggtccttaattggtttgatcattcacttgctcgtttgtatcctataaataggacc 167  Q
    ||||||||||||||||||| | |||||||||||| ||||||| ||||||||||||| |||||||||| || |||||| ||||| |||||||||||||||     
T  29185689 atcttccaccttcctataatccccattagtaaatatatggtttgtggtccttaattcgtttgatcatccatttgctcatttgtgtcctataaataggaca 29185590  T
Q  168 tatattgtaatataaagaacgcacttgtgaagtaatacaata 209  Q
    ||||||||||| |||| ||| ||||||||||||||| |||||    
T  29185589 tatattgtaatgtaaaaaacacacttgtgaagtaatgcaata 29185548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 209
Target Start/End: Original strand, 17703045 - 17703108
Alignment:
Q  146 tttgtatcctataaataggacctatattgtaatataaagaacgcacttgtgaagtaatacaata 209  Q
    ||||||||||||||||||||| || ||||| || ||||| || |||| ||||||||| ||||||    
T  17703045 tttgtatcctataaataggacatacattgtcatgtaaagcacacactagtgaagtaacacaata 17703108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 169
Target Start/End: Complemental strand, 44711417 - 44711346
Alignment:
Q  99 aatgtatggttagtggtccttaattggtttgatcattcacttgctcgt-ttgtatcctataaataggaccta 169  Q
    |||| ||||||||||||| ||||||  |||||||||||| ||| || | ||||||||||||||| |||||||    
T  44711417 aatggatggttagtggtctttaattattttgatcattcatttgttcatattgtatcctataaatcggaccta 44711346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 45
Target Start/End: Complemental strand, 12756344 - 12756311
Alignment:
Q  12 gagatggacatccaaaggggagtgttatgaatat 45  Q
    ||||||||||||||| ||||||||||||||||||    
T  12756344 gagatggacatccaagggggagtgttatgaatat 12756311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 28621788 - 28621833
Alignment:
Q  99 aatgtatggttagtggtccttaattggtttgatcattcacttgctc 144  Q
    |||| ||||||||||||||||||||  ||| |||||||||||||||    
T  28621788 aatggatggttagtggtccttaattactttaatcattcacttgctc 28621833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 14 - 187
Target Start/End: Original strand, 11574 - 11751
Alignment:
Q  14 gatggacatccaaaggggagtgttatgaatatcagtggatgtccatgtcgttcaatcttccaccttcctataacct------ccattagtaaatgtatgg 107  Q
    |||||||||||||  ||||||||||||||||| |||||||||||||||| || ||||||||||||| ||||||||       || ||| |||||| ||||    
T  11574 gatggacatccaagagggagtgttatgaatattagtggatgtccatgtcctt-aatcttccacctttctataaccctaaccccctttaataaatgcatgg 11672  T
Q  108 ttagtggtccttaattggtttgatcattcacttgctcgtttgtatcctataaataggacctatattgtaatataaagaac 187  Q
    |||||| | ||||||| |||||||||||||||||||| ||| | ||||||||||| ||||||||||||||| ||||||||    
T  11673 ttagtgttgcttaattcgtttgatcattcacttgctcattt-tgtcctataaatatgacctatattgtaatgtaaagaac 11751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 67 - 161
Target Start/End: Complemental strand, 18902218 - 18902124
Alignment:
Q  67 aatcttccaccttcctataacctccattagtaaatgtatggttagtggtccttaattggtttgatcattcacttgctcgtttgtatcctataaat 161  Q
    |||||| |||||||||||||||||||||||| |||| ||| ||| ||||||||||||| ||||||| ||||||||||| ||||| ||||||||||    
T  18902218 aatctttcaccttcctataacctccattagtgaatggatgcttaatggtccttaattgttttgatctttcacttgctcatttgtgtcctataaat 18902124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 65 - 178
Target Start/End: Complemental strand, 12746698 - 12746585
Alignment:
Q  65 tcaatcttccaccttcctataacctccattagtaaatgtatggttagtggtccttaattggtttgatcattcacttgctcgtttgtatcctataaatagg 164  Q
    |||||||||||||||||||||||| | |||||| |||||||  ||| |||||||||||   ||||||||||||||||||| ||||  ||||||||||||     
T  12746698 tcaatcttccaccttcctataaccactattagtgaatgtatacttaatggtccttaatgactttgatcattcacttgctcatttgcgtcctataaataga 12746599  T
Q  165 acctatattgtaat 178  Q
    ||||||||| ||||    
T  12746598 acctatattataat 12746585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 67 - 163
Target Start/End: Original strand, 26654459 - 26654555
Alignment:
Q  67 aatcttccaccttcctataacctccattagtaaatgtatggttagtggtccttaattggtttgatcattcacttgctcgtttgtatcctataaatag 163  Q
    ||||||||||||||||||||||  | || || |||||||||||||||||||||||||| |||||| |||||||| ||| ||||| ||||||| ||||    
T  26654459 aatcttccaccttcctataaccatcgttggtgaatgtatggttagtggtccttaattgctttgattattcacttactcatttgtgtcctatagatag 26654555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 69 - 166
Target Start/End: Original strand, 27360214 - 27360311
Alignment:
Q  69 tcttccaccttcctataacctccattagtaaatgtatggttagtggtccttaattggtttgatcattcacttgctcgt-ttgtatcctataaataggac 166  Q
    ||||||||||||||||||| ||||| | | |||  ||||||||||||||||||||  |||||||||||||||| || | ||||||||||||||||||||    
T  27360214 tcttccaccttcctataac-tccataaatgaatagatggttagtggtccttaattactttgatcattcacttgttcatattgtatcctataaataggac 27360311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 207
Target Start/End: Original strand, 28874228 - 28874288
Alignment:
Q  146 tttgtatcctataaataggacctatattgtaatataaagaacgcacttgtgaagtaatacaa 207  Q
    |||||||||||||||||||||||| | ||| |||||||| || |||||||||||||||||||    
T  28874228 tttgtatcctataaataggacctacactgtcatataaag-acacacttgtgaagtaatacaa 28874288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 162
Target Start/End: Complemental strand, 56341944 - 56341851
Alignment:
Q  69 tcttccaccttcctataacctccattagtaaatgtatggttagtggtccttaattggtttgatcattcacttgctcgtttgtatcctataaata 162  Q
    |||||||||||||||||| ||  |||||| | || ||||||||||||  ||||||| ||| ||||||||||||||| ||| | || ||||||||    
T  56341944 tcttccaccttcctataatctttattagtgagtggatggttagtggtggttaattgttttcatcattcacttgctcatttatgtcttataaata 56341851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 162
Target Start/End: Original strand, 7895115 - 7895210
Alignment:
Q  67 aatcttccaccttcctataacctccattagtaaatgtatggttagtggtccttaattggtttgatcattcacttgctcgtttgtatcctataaata 162  Q
    |||||||||| || ||| ||||| ||||||| ||| |||||||||||||||||||||  ||||| |||| | |||||  ||||| | |||||||||    
T  7895115 aatcttccacttttctacaaccttcattagtgaatatatggttagtggtccttaattattttgaacatttatttgcttatttgtgttctataaata 7895210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 185
Target Start/End: Original strand, 20275931 - 20276046
Alignment:
Q  71 ttccaccttcctataacctccattagtaaatgtatggttagtggtccttaattggtttgatcattcacttgctcgt-ttgtatcctataaataggaccta 169  Q
    ||||||||||||||||| ||||||||||| || || |||||||| |||||| ||  ||||||| |||||| ||| | || | | |||||||||||||  |    
T  20275931 ttccaccttcctataacttccattagtaagtgaatagttagtggaccttaactgccttgatcactcacttactcatcttatgtactataaataggactca 20276030  T
Q  170 tattgtaatataaaga 185  Q
    ||||||| | ||||||    
T  20276031 tattgtattgtaaaga 20276046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 166
Target Start/End: Complemental strand, 51700429 - 51700330
Alignment:
Q  67 aatcttccaccttcctataacctccattagtaaatgtatggttagtggtccttaattggtttgatcattcacttgctcgtttgtatcctataaataggac 166  Q
    ||||||| ||||| |||||||   ||||||| |||||||| |||  ||| |||||||  ||||||||||||| ||||| |||||||| |||||| |||||    
T  51700429 aatcttctacctttctataactctcattagtgaatgtatgattatcggttcttaattattttgatcattcacatgctcatttgtatcatataaagaggac 51700330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 45
Target Start/End: Original strand, 6162225 - 6162258
Alignment:
Q  12 gagatggacatccaaaggggagtgttatgaatat 45  Q
    ||||||||||||||| ||||||||||||||||||    
T  6162225 gagatggacatccaagggggagtgttatgaatat 6162258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 165
Target Start/End: Complemental strand, 52311383 - 52311286
Alignment:
Q  69 tcttccaccttcctataacctccattagtaaatgtatggttagtggtccttaattggtttgatcattcacttgctcgt-ttgtatcctataaatagga 165  Q
    |||||||||||||||||||| | ||| || | || || |||||||| ||||||||  |||||||| ||||||  || | |||| ||||||||||||||    
T  52311383 tcttccaccttcctataacccctattggtgagtgaatagttagtggaccttaatttctttgatcactcacttagtcatcttgtgtcctataaatagga 52311286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 53982073 - 53982105
Alignment:
Q  13 agatggacatccaaaggggagtgttatgaatat 45  Q
    |||||||||||||| ||||||||||||||||||    
T  53982073 agatggacatccaagggggagtgttatgaatat 53982105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 69 - 209
Target Start/End: Complemental strand, 35339120 - 35338979
Alignment:
Q  69 tcttccaccttcctataacctccattagtaaatgtatggttagtggtccttaattggtttgatcattcacttgctcgt-ttgtatcctataaataggacc 167  Q
    |||||||||||||||||||  |||| ||| |||| ||||||| ||||||||||||  ||||||  ||||| ||||| | ||||||||||||||||||| |    
T  35339120 tcttccaccttcctataactcccataagtgaatggatggttaatggtccttaattactttgatatttcacatgctcatattgtatcctataaataggatc 35339021  T
Q  168 tatattgtaatataaagaacgcacttgtgaagtaatacaata 209  Q
    || ||||| || |||||||  ||||||||||  |||||||||    
T  35339020 tacattgtcatgtaaagaatacacttgtgaaagaatacaata 35338979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 67 - 160
Target Start/End: Original strand, 42129526 - 42129619
Alignment:
Q  67 aatcttccaccttcctataacctccattagtaaatgtatggttagtggtccttaattggtttgatcattcacttgctcgtttgtatcctataaa 160  Q
    |||||||||||||||||||||| | |||||| ||| |||||||| || |||||||||  ||||||||||||||||||| ||||| | |||||||    
T  42129526 aatcttccaccttcctataacccctattagtgaatatatggttaatgatccttaatttctttgatcattcacttgctcatttgtgtgctataaa 42129619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 69 - 207
Target Start/End: Original strand, 7578557 - 7578695
Alignment:
Q  69 tcttccaccttcctataacctccattagtaaatgtatggttagtggtccttaattggtttgatcattcacttgctcgt-ttgtatcctataaataggacc 167  Q
    ||||||||||||| ||||   |||| ||| |||| ||||| ||||||||||||||  ||||||||||||||||||  | ||||||||||||||||||||     
T  7578557 tcttccaccttcccataagtcccataagtgaatggatggtcagtggtccttaattactttgatcattcacttgcttatattgtatcctataaataggact 7578656  T
Q  168 tatattgtaatataaagaacgcacttgtgaagtaatacaa 207  Q
     ||||| || ||||||| || |||||| |||| |||||||    
T  7578657 catattatagtataaag-acacacttgagaagcaatacaa 7578695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 209
Target Start/End: Complemental strand, 23818897 - 23818703
Alignment:
Q  14 gatggacatccaaaggggagtgttatgaatatcagtggatgtccatgtcgttcaatcttccaccttcctataacctccattagtaaatgtatggttagtg 113  Q
    ||||||||||||| | | | |||||||||||| ||||||||||||| || || | |||||||  ||| ||||||  |||||||| | || ||  ||||||    
T  23818897 gatggacatccaatgagaaatgttatgaatattagtggatgtccatatccttga-tcttccatattcttataactcccattagtgagtggattcttagtg 23818799  T
Q  114 gtccttaattgg-tttgatcattcacttgctcgtttgtatcctataaataggacctatattgtaatataaagaacgcacttgtgaagtaatacaata 209  Q
     |  ||||||   ||||||||||||||| ||  |||||||||||||||||||||  |  ||||||| ||||| || |||||||||||||| ||||||    
T  23818798 atgtttaattaaatttgatcattcacttacta-tttgtatcctataaataggactcaagttgtaatgtaaagtacacacttgtgaagtaaaacaata 23818703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 209
Target Start/End: Original strand, 20125314 - 20125374
Alignment:
Q  148 tgtatcctataaataggacctatattgtaatataaagaacgcacttgtgaagtaatacaata 209  Q
    ||||||||||||||||||| ||||||| ||| ||| | || |||||||||||||||||||||    
T  20125314 tgtatcctataaataggacatatattgcaatgtaatg-acacacttgtgaagtaatacaata 20125374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 137
Target Start/End: Complemental strand, 25617114 - 25617059
Alignment:
Q  82 tataacctccattagtaaatgtatggttagtggtccttaattggtttgatcattca 137  Q
    ||||||| |||||||| |||||||||||||||||| ||||||| ||| || |||||    
T  25617114 tataaccaccattagtgaatgtatggttagtggtctttaattgttttaattattca 25617059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 45
Target Start/End: Original strand, 32148454 - 32148487
Alignment:
Q  12 gagatggacatccaaaggggagtgttatgaatat 45  Q
    ||||||||||||||| ||||||||||||||||||    
T  32148454 gagatggacatccaagggggagtgttatgaatat 32148487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 70 - 177
Target Start/End: Original strand, 19856 - 19963
Alignment:
Q  70 cttccaccttcctataacctccattagtaaatgtatggttagtggtccttaattggtttgatcattcacttgctcgtttgtatcctataaataggaccta 169  Q
    |||||| |||||||||||| | |||||| |||||||  ||| | |||||||||   |||||||||||||||| || ||||| || |||||||| ||||||    
T  19856 cttccatcttcctataaccactattagtgaatgtatacttaatagtccttaatgactttgatcattcacttgttcatttgtgtcatataaataagaccta 19955  T
Q  170 tattgtaa 177  Q
    ||||||||    
T  19956 tattgtaa 19963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 70 - 177
Target Start/End: Original strand, 30024 - 30131
Alignment:
Q  70 cttccaccttcctataacctccattagtaaatgtatggttagtggtccttaattggtttgatcattcacttgctcgtttgtatcctataaataggaccta 169  Q
    |||||| |||||||||||| | |||||| |||||||  ||| | |||||||||   |||||||||||||||| || ||||| || |||||||| ||||||    
T  30024 cttccatcttcctataaccactattagtgaatgtatacttaatagtccttaatgactttgatcattcacttgttcatttgtgtcatataaataagaccta 30123  T
Q  170 tattgtaa 177  Q
    ||||||||    
T  30124 tattgtaa 30131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0248 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 199
Target Start/End: Original strand, 16218 - 16271
Alignment:
Q  146 tttgtatcctataaataggacctatattgtaatataaagaacgcacttgtgaag 199  Q
    |||||||||||||||||||||||| ||||  || |||||||| ||| |||||||    
T  16218 tttgtatcctataaataggacctacattgccatgtaaagaacacacctgtgaag 16271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 45
Target Start/End: Complemental strand, 345853 - 345820
Alignment:
Q  12 gagatggacatccaaaggggagtgttatgaatat 45  Q
    ||||||||||||||| ||||||||||||||||||    
T  345853 gagatggacatccaagggggagtgttatgaatat 345820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University