View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11004_low_2 (Length: 326)
Name: NF11004_low_2
Description: NF11004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11004_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 71 - 311
Target Start/End: Complemental strand, 40367167 - 40366927
Alignment:
| Q |
71 |
aaggttaaacaactttatattaagaaatcaaagcagaatagaacaatggccagatcataaggtttgagacatttttatttttaaggttagttagacatta |
170 |
Q |
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| T |
40367167 |
aaggttaaacaactttatattaagaaatcaaagcagaatagaacaatggccagatcataaggtttgagacatttttatttttaaggttagttagacatta |
40367068 |
T |
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| Q |
171 |
atttagaaacttaatttgcatacccacgcagaaaataaagctcgagtctaagaatcgatacaaaagtctcactatcacatgagagactttttccaataaa |
270 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
40367067 |
atttagaaacttaatttgcatacccacgcagaaaataaagctcgagtctaagaatcgatacaaaagtctcaatatcacatgagagactttttccaataaa |
40366968 |
T |
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| Q |
271 |
aagtaacaaatcaattgggtgaaattcttagtcagaaaact |
311 |
Q |
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| T |
40366967 |
aagtaacaaattaattgggtgaaattcttagtcagaaaact |
40366927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 40367231 - 40367187
Alignment:
| Q |
1 |
atacagcaaattaagcaaaagaaaatttaaaaaggaaaatcaaga |
45 |
Q |
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| T |
40367231 |
atacagcaaattaagcaaaagaaaatttaaaaaggaaaatcaaga |
40367187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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