View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11005_high_4 (Length: 456)

Name: NF11005_high_4
Description: NF11005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11005_high_4
NF11005_high_4
[»] chr3 (4 HSPs)
chr3 (181-442)||(36120431-36120696)
chr3 (19-103)||(36120309-36120393)
chr3 (262-329)||(41048321-41048388)
chr3 (68-112)||(36120379-36120423)
[»] chr2 (3 HSPs)
chr2 (181-445)||(40566031-40566300)
chr2 (19-103)||(40565909-40565993)
chr2 (68-112)||(40565979-40566023)
[»] chr8 (1 HSPs)
chr8 (262-329)||(27260473-27260540)
[»] chr1 (2 HSPs)
chr1 (262-329)||(13620254-13620321)
chr1 (262-329)||(52040388-52040455)
[»] chr7 (2 HSPs)
chr7 (262-329)||(21891982-21892049)
chr7 (265-325)||(3737027-3737086)
[»] chr5 (1 HSPs)
chr5 (262-329)||(1688059-1688126)


Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-128; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 181 - 442
Target Start/End: Original strand, 36120431 - 36120696
Alignment:
Q  181 ttaaagcatagcaaggcaaacatatacttaaat----acaaccatcatatggggtactaattaacttaatttaatctaagataattatttatctcactca 276  Q
    |||||||||||||||||||||||||||||||||    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36120431 ttaaagcatagcaaggcaaacatatacttaaatcgacacaaccatcgtatggggtactaattaacttaatttaatctaagataattatttatctcactca 36120530  T
Q  277 aacataatcataaactatccaaaaggtgggttctacaactaaaggaactcaccgcgacttatctgaccactttcaacagcttaagctccaccttctgctt 376  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  36120531 aacataatcataaactatctaaaaggtgggttctacaactaaaggaactcaccgcgacttatctaaccactttcaacagcttaagctccaccttctgctt 36120630  T
Q  377 aagcctctgtctgccaagctcttgcttctgtcttctccagtctcctaaatccaattcctacttgtt 442  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  36120631 aagcctctgtctgccaagctcttgcttctgtcttctccagtcccctaaatccaattcctacttgtt 36120696  T

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Target: chr3; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 36120309 - 36120393
Alignment:
Q  19 ctaaatgaaaaatcaatgttttgttgcgtaaaaattacattcatggggttggtaattgattaccggtatgtggtaatcgattacc 103  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||    
T  36120309 ctaaatgaaaaatcaatgttttgttgcgtaaaaattacattcccggggttggtaatcgattaccggtatgtggtaatcgattacc 36120393  T

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Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 262 - 329
Target Start/End: Complemental strand, 41048388 - 41048321
Alignment:
Q  262 tatttatctcactcaaacataatcataaactatccaaaaggtgggttctacaactaaaggaactcacc 329  Q
    |||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||    
T  41048388 tatttatctcactcaaacataatcataaactacccaagaggtaggttctacaactaaaggaactcacc 41048321  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 68 - 112
Target Start/End: Original strand, 36120379 - 36120423
Alignment:
Q  68 tggtaattgattaccggtatgtggtaatcgattaccacggtaaaa 112  Q
    ||||||| |||||||||||||||| ||||||||||||| ||||||    
T  36120379 tggtaatcgattaccggtatgtggcaatcgattaccacagtaaaa 36120423  T

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Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 181 - 445
Target Start/End: Original strand, 40566031 - 40566300
Alignment:
Q  181 ttaaagcatagcaaggcaaacatatacttaaat----acaaccatcatatggggtactaattaacttaatttaatctaagataattatttatctcactca 276  Q
    ||||| |||||||||||||||||||||||||||    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40566031 ttaaatcatagcaaggcaaacatatacttaaatcgacacaaccatcgtatggggtactaattaacttaatttaatctaagataattatttatctcactca 40566130  T
Q  277 aacataatcataaactatccaaaaggtgggttctacaactaaaggaactcaccgcgacttatctgaccactttcaacagcttaagctccaccttctgctt 376  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||    
T  40566131 aacataatcataaactatctaaaaggtgggttctacaactaaaggaactcaccgcgacttatctaaccactttcaacagcttaagctccaccttcaactt 40566230  T
Q  377 aagcctctgtctgccaagctcttgcttctgtcttctccagtctcctaaatccaa-ttcctacttgttctt 445  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  40566231 aagcctctgtctgccaagctcttgcttctgtcttctccagtcccctaaatccaatttcctacttgttctt 40566300  T

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Target: chr2; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 40565909 - 40565993
Alignment:
Q  19 ctaaatgaaaaatcaatgttttgttgcgtaaaaattacattcatggggttggtaattgattaccggtatgtggtaatcgattacc 103  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||    
T  40565909 ctaaatgaaaaatcaatgttttgttgcgtaaaaattacattcccggggttggtaatcgattaccggtatgtggtaatcgattacc 40565993  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 68 - 112
Target Start/End: Original strand, 40565979 - 40566023
Alignment:
Q  68 tggtaattgattaccggtatgtggtaatcgattaccacggtaaaa 112  Q
    ||||||| |||||||||||||||| ||||||||||||| ||||||    
T  40565979 tggtaatcgattaccggtatgtggcaatcgattaccacagtaaaa 40566023  T

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Target: chr8 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 262 - 329
Target Start/End: Original strand, 27260473 - 27260540
Alignment:
Q  262 tatttatctcactcaaacataatcataaactatccaaaaggtgggttctacaactaaaggaactcacc 329  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  27260473 tatttatctcactcaaacataatcataaactatccaagaggtgggttctacaactaaaggaactcacc 27260540  T

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Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 262 - 329
Target Start/End: Complemental strand, 13620321 - 13620254
Alignment:
Q  262 tatttatctcactcaaacataatcataaactatccaaaaggtgggttctacaactaaaggaactcacc 329  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  13620321 tatttatctcactcaaacataatcataaactacccaagaggtgggttctacaactaaaggaactcacc 13620254  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 262 - 329
Target Start/End: Original strand, 52040388 - 52040455
Alignment:
Q  262 tatttatctcactcaaacataatcataaactatccaaaaggtgggttctacaactaaaggaactcacc 329  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  52040388 tatttatctcactcaaacataatcataaactacccaagaggtgggttctacaactaaaggaactcacc 52040455  T

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Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 262 - 329
Target Start/End: Original strand, 21891982 - 21892049
Alignment:
Q  262 tatttatctcactcaaacataatcataaactatccaaaaggtgggttctacaactaaaggaactcacc 329  Q
    |||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||    
T  21891982 tatttatctcactcaaacataatcataaactacccaagaggtaggttctacaactaaaggaactcacc 21892049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 265 - 325
Target Start/End: Complemental strand, 3737086 - 3737027
Alignment:
Q  265 ttatctcactcaaacataatcataaactatccaaaaggtgggttctacaactaaaggaact 325  Q
    |||||||||||||| |||||||||||||| | || ||||||||||||||||||||||||||    
T  3737086 ttatctcactcaaaaataatcataaactagc-aagaggtgggttctacaactaaaggaact 3737027  T

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Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 262 - 329
Target Start/End: Original strand, 1688059 - 1688126
Alignment:
Q  262 tatttatctcactcaaacataatcataaactatccaaaaggtgggttctacaactaaaggaactcacc 329  Q
    ||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  1688059 tatttatctcactaaaacataatcataaactacccaagaggtgggttctacaactaaaggaactcacc 1688126  T

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