View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11005_low_1 (Length: 592)
Name: NF11005_low_1
Description: NF11005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11005_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 553; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 19 - 575
Target Start/End: Original strand, 38532791 - 38533347
Alignment:
| Q |
19 |
aacaatccctcaccgatccaactaagagccattcttcactacgccacatcacgtgttgttcctcaacaatcggtctcagagatcaagatcagtttcgatg |
118 |
Q |
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| T |
38532791 |
aacaatccctcaccgatccaactaagagccattcttcactacgccacatcacgtgttgttcctcaacaatcggtctcagagatcaagatcagtttcgatg |
38532890 |
T |
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| Q |
119 |
tcttaaaaacctacgatcgaccatgcaactttcttgtcttcggacttggccatgattctctcatgtgggcttcgtttaacccaggtggcaacacattatt |
218 |
Q |
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| T |
38532891 |
tcttaaaaacctacgatcgaccatgcaactttcttgtcttcggacttggccatgattctctcatgtgggcttcgtttaacccaggtggcaacacattatt |
38532990 |
T |
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| Q |
219 |
ccttgaagaagatcctaaatgggttcaaaccgttcttaaagatgcaccgggccttcgagcccataccgttcgttatcgaacccagcttcgtgaagccaac |
318 |
Q |
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| T |
38532991 |
ccttgaagaagatcctaaatgggttcaaaccgttcttaaagatgcaccgggccttcgagcccataccgttcgttatcgaacccagcttcgtgaagccagc |
38533090 |
T |
|
| Q |
319 |
aaactcatctcctcctaccgcaaggaacctatgtgttcaccttctaaagcttttctacgtggaaacaaagcatgcaagcttgcgcttgagaatttacccg |
418 |
Q |
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| T |
38533091 |
aaactcatctcctcctaccgcaaggaacctatgtgttcaccttctaaagcttttctacgtggaaacaaagcatgcaagcttgcgcttgagaatttacccg |
38533190 |
T |
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| Q |
419 |
atgaggtttacgatacggagtgggatcttattatgatcgatgcgccgaaagggtatttcgcggaggcgccggggagaatggcggcggtgttttcagctgc |
518 |
Q |
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| T |
38533191 |
atgaggtttacgatacggagtgggatcttattatgatcgatgcgccgaaagggtatttcgcggaggcgccggggagaatggcggcggtgttttcagctgc |
38533290 |
T |
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| Q |
519 |
tgttatggcgaggaataggaagggatctggtgtgacgcatgtgtttttgcatgatgt |
575 |
Q |
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| T |
38533291 |
tgttatggcgaggaataggaagggatctggtgtgacgcatgtgtttttgcatgatgt |
38533347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 418 - 575
Target Start/End: Complemental strand, 34715272 - 34715115
Alignment:
| Q |
418 |
gatgaggtttacgatacggagtgggatcttattatgatcgatgcgccgaaagggtatttcgcggaggcgccggggagaatggcggcggtgttttcagctg |
517 |
Q |
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| T |
34715272 |
gatgagatttacgaaacggagtgggatttgataatgatcgatgcgccgagaggttatttcgcggaggcgccggggagaatggcggcgatattttcaatga |
34715173 |
T |
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| Q |
518 |
ctgttatggcgaggaataggaagggatctggtgtgacgcatgtgtttttgcatgatgt |
575 |
Q |
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| T |
34715172 |
cggtgatggcgagaaatagaaaaggttccggtgtgacgcacgtgtttttgcatgatgt |
34715115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 223 - 268
Target Start/End: Complemental strand, 34715467 - 34715422
Alignment:
| Q |
223 |
gaagaagatcctaaatgggttcaaaccgttcttaaagatgcaccgg |
268 |
Q |
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| T |
34715467 |
gaagaagatcctaaatgggttcaaaccgttctcaaagacgcaccgg |
34715422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 236
Target Start/End: Original strand, 10188847 - 10188944
Alignment:
| Q |
139 |
ccatgcaactttcttgtcttcggacttggccatgattctctcatgtgggcttcgtttaacccaggtggcaacacattattccttgaagaagatcctaa |
236 |
Q |
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| T |
10188847 |
ccatgcaactttctcgtgtttggaattggtcacgacgcactcatgtgggattcgtttaatccacgtggcatcacactatatctcgaagaagatcctaa |
10188944 |
T |
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