View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11005_low_2 (Length: 531)
Name: NF11005_low_2
Description: NF11005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11005_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 35 - 284
Target Start/End: Original strand, 43983859 - 43984108
Alignment:
| Q |
35 |
tacaatccttcaattgatccaaaataaaatgacttttattaaacataaacaatgccaaatacaaaagtataattaatccaagtaataagagatttgagct |
134 |
Q |
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| T |
43983859 |
tacaatccttcaattgatccaaaataaaatgacttttattaaacataaacaatgccaaatacaaaagtataattgatccaagtaataagagatttaagct |
43983958 |
T |
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| Q |
135 |
ccttaaacctaaggttcagagtttaattattgactctcacatatttcccaacgaaattaattactgctaagcggtgaaaatttcttaccaatatcgtgct |
234 |
Q |
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| T |
43983959 |
ccttaaacataaggttcagagtttaattattgactctcacatatttcccaacgaaattaattactgctaagcggtgaaaatttcgtaccaatatcgtgct |
43984058 |
T |
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| Q |
235 |
aaaccaaaaaagatgtagcaaaatcagacacggcatcttatgcagatatc |
284 |
Q |
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| T |
43984059 |
aaaccaaaaaagatgtagcaaaatcagacacggcatcttatgcagatatc |
43984108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 444 - 513
Target Start/End: Original strand, 43984235 - 43984304
Alignment:
| Q |
444 |
aaaccccaataaacttccacatcagtgcacactaaaattccacccgcagcagcaaagaaatgaccaaaat |
513 |
Q |
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| T |
43984235 |
aaaccccaataaacttccacatcagtgcacactaaaattccacccgcagcagcaaagaaatgaccaaaat |
43984304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 352 - 399
Target Start/End: Original strand, 43984176 - 43984223
Alignment:
| Q |
352 |
gcacaacaactctcaaccaacagctttcaaatatcctacatttctcca |
399 |
Q |
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| T |
43984176 |
gcacaacaactctcaaccaacagctctcaaatatcctacatttctcca |
43984223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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