View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11005_low_3 (Length: 498)
Name: NF11005_low_3
Description: NF11005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11005_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 491
Target Start/End: Complemental strand, 44817622 - 44817132
Alignment:
| Q |
1 |
cagaaggaataaaaccaacacttggagcagcagcatcattagcaggtacacctaaaaacacttgtgtagcttgacttgaagtccattgagtccaagcatt |
100 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
44817622 |
cagaaggaataaaaccaccacttggagcggcagcatcattagcaggtacacctaaaaacacttgtttagcttgacttgaagtccattgattccaagcatc |
44817523 |
T |
|
| Q |
101 |
aacaagattgttagtgtttccatttgagtattgacattgatgattattataaaactgaacccaaaaataatcaaataaaccagtattaatagttgaatcc |
200 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||| || ||| |||||||||||||||||||||| | |||||||||||||||||| ||||||| ||||||| |
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| T |
44817522 |
aacaagattgttagtgtttccacttgaatattggcactgaggattattataaaactgaacccacacataatcaaataaaccagtcttaatagctgaatcc |
44817423 |
T |
|
| Q |
201 |
aaataagcatcagggtaaggacattgtggtgttgcacacaaataaactttcttctgtgaactaaacccatcaagtacttttgcaagttcatcccaatatt |
300 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
44817422 |
aaatgagcatcagggtaaggacattgtggtgctgcagacaaataaactttcttctgtgaactaaacccatcaagtgcttttgcaagttcatcccaatatt |
44817323 |
T |
|
| Q |
301 |
caccatcactagcttcaatatcaaaatcgattccatccaaaacagcatcacctaatggtcttgaagatgatgtgccacccaaaaagttgttccataggta |
400 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
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|
| T |
44817322 |
gaccatcaccagcttcaatatcaaaatcaattccatccaaaacagcatcacctaatggtcttgaagatgatgtgccacccaagaaattgttccataggta |
44817223 |
T |
|
| Q |
401 |
gtttgcaagctgcgtggtgtcgtaagacgagttgagagagtagcttccaacgccgcctcggatagagagcaacactttgatgcctttgctt |
491 |
Q |
| |
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|||||||||||| | || |||||||||||||| |||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||| |
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| T |
44817222 |
gtttgcaagctgtgaggcgtcgtaagacgagtagagagagtagcttccagtgccacctccgatagagagcaacactttgatgcctttgctt |
44817132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 491
Target Start/End: Complemental strand, 44834976 - 44834489
Alignment:
| Q |
1 |
cagaaggaataaaaccaacacttggagcagcagcatcattagcaggtacacctaaaaacacttgtgtagcttgacttgaagtccattgagtccaagcatt |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
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|
| T |
44834976 |
cagaaggaataaaaccaccacttggagcagcagcatcattagcaggtacacctaaaaacacttgtttagcttgacttgaagtccattgattccaagcatt |
44834877 |
T |
|
| Q |
101 |
aacaagattgttagtgtttccatttgagtattgacattgatgattattataaaactgaacccaaaaataatcaaataaaccagtattaatagttgaatcc |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| || ||| |||||||||||||||||||||| | ||||||||||||||| |||||||||| |||||| |
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|
| T |
44834876 |
aacaagattgttagtgtttccacttgagtattggcactgaggattattataaaactgaacccacacataatcaaataaaccggtattaatagccgaatcc |
44834777 |
T |
|
| Q |
201 |
aaataagcatcagggtaaggacattgtggtgttgcacacaaataaactttcttctgtgaactaaacccatcaagtacttttgcaagttcatcccaatatt |
300 |
Q |
| |
|
|||| |||||||||| |||||||||| |||| |||| |||| |||||| || | ||||| ||||| |||| |||| || ||||||| ||||| | | || |
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|
| T |
44834776 |
aaatgagcatcagggaaaggacattgaggtgctgcagacaagtaaactctcctttgtgagctaaaaccattaagtgctcttgcaaggtcatcatagtgtt |
44834677 |
T |
|
| Q |
301 |
caccatcactagcttcaatatcaaaatcgattccatccaaaacagcatcacctaatggtcttgaagatgatgtgccacccaaaaagttgttccataggta |
400 |
Q |
| |
|
||| ||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||| || |||||||||||||| |
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|
| T |
44834676 |
cac---caccagcttcaatatcaaaatcaattccatccaaaacagcatcacctaaaggtcttgaagatgacgtgccacccaagaaattgttccataggta |
44834580 |
T |
|
| Q |
401 |
gtttgcaagctgcgtggtgtcgtaagacgagttgagagagtagcttccaacgccgcctcggatagagagcaacactttgatgcctttgctt |
491 |
Q |
| |
|
||||||| |||||||| || | || ||| |||||||||||||| | || |||| || ||| |||||||||||||||||||||||| |
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|
| T |
44834579 |
atttgcaacctgcgtggcatcatcagctgaggaaagagagtagcttccggcaccacctccgagagatagcaacactttgatgcctttgctt |
44834489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 314 - 396
Target Start/End: Complemental strand, 44838142 - 44838060
Alignment:
| Q |
314 |
ttcaatatcaaaatcgattccatccaaaacagcatcacctaatggtcttgaagatgatgtgccacccaaaaagttgttccata |
396 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||| || ||||||||| |
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|
| T |
44838142 |
ttcaatatcaaaatctattccatctaaaacagcatcacctaatggtcttgaagatgacttgccacccaagaaagtgttccata |
44838060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 314 - 396
Target Start/End: Complemental strand, 44849229 - 44849147
Alignment:
| Q |
314 |
ttcaatatcaaaatcgattccatccaaaacagcatcacctaatggtcttgaagatgatgtgccacccaaaaagttgttccata |
396 |
Q |
| |
|
|||||| |||||||| || ||||| || ||||||||||| |||||||||||| |||| ||||||||||| || ||||||||| |
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|
| T |
44849229 |
ttcaatgtcaaaatctatgccatctaacacagcatcaccaaatggtcttgaatatgacgtgccacccaagaaagtgttccata |
44849147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 270 - 491
Target Start/End: Original strand, 17570951 - 17571172
Alignment:
| Q |
270 |
tcaagtacttttgcaagttcatcccaatattcaccatcactagcttcaatatcaaaatcgattccatccaaaacagcatcacctaatggtcttgaagatg |
369 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
17570951 |
tcaagtgcttttgcaagttcatcccaatgttcaccatcaccagcttcaatatcaaaatcaattccatccaaaacagcatcacctaatggtcttgaagatg |
17571050 |
T |
|
| Q |
370 |
atgtgccacccaaaaagttgttccataggtagtttgcaagctgcgtggtgtcgtaagacgagttgagagagtagcttccaacgccgcctcggatagagag |
469 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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|
| T |
17571051 |
atgtgccacccaagaaattgttccataggtagtttgcaagctgcgtggtgtcgtaagacgagttgagagagtagcttccaacgccgccttcgataaagag |
17571150 |
T |
|
| Q |
470 |
caacactttgatgcctttgctt |
491 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
17571151 |
caacactttgatgcctttgctt |
17571172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 158; Significance: 7e-84; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 29617172 - 29617421
Alignment:
| Q |
1 |
cagaaggaataaaaccaacacttggagcagcagcatcattagcaggtacacctaaaaacacttgtgtagcttgacttgaagtccattgagtccaagcatt |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||| |||| ||||| |||| |||||||| |||| |||||||||||||||| |||||| |||||||| | |
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|
| T |
29617172 |
cagaaggaataaaaccaccacttggagcagaagcagcatttgcaggaacacataaaaacatttgtttagcttgacttgaagtgcattgattccaagcact |
29617271 |
T |
|
| Q |
101 |
aacaagattgttagtgtttccatttgagtattgacattgatgattattataaaactgaacccaaaaataatcaaataaaccagtattaatagttgaatcc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||| | |
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|
| T |
29617272 |
aacaagattgttagtgtttccatttgagtatcgacattgaggattattataaaactgaacccaaacataatcaaataaatcagtattaatagctgaattc |
29617371 |
T |
|
| Q |
201 |
aaataagcatcagggtaaggacattgtggtgttgcacacaaataaacttt |
250 |
Q |
| |
|
|||||||||| |||||||| |||||||||| |||| ||||||| ||||| |
|
|
| T |
29617372 |
aaataagcatttgggtaagggcattgtggtgctgcagacaaatagacttt |
29617421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 23396237 - 23396487
Alignment:
| Q |
1 |
cagaaggaataaaaccaacacttggagcagcagcatcattagcaggtacacctaaaaaca-cttgtgtagcttgacttgaagtccattgagtccaagcat |
99 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||| |||| ||| |||| |||||| | ||||| ||||||||||||||||||||||| | ||||||| |
|
|
| T |
23396237 |
cagaaggaataaaaccaccacttggagcagaagcagcatttacagaaacacataaaaaaaacttgtttagcttgacttgaagtccattgatttcaagcat |
23396336 |
T |
|
| Q |
100 |
taacaagattgttagtgtttccatttgagtattgacattgatgattattataaaactgaacccaaaaataatcaaataaaccagtattaatagttgaatc |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||| |||||| ||||||||||||||||||| |||||| |
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|
| T |
23396337 |
taacaagattgttagtgtttccatttgagtattgacattgaggattattataaaaatgaacctaaacataatctaataaaccagtattaatagctgaatc |
23396436 |
T |
|
| Q |
200 |
caaataagcatcagggtaaggacattgtggtgttgcacacaaataaacttt |
250 |
Q |
| |
|
||||||||||| || ||||||||||||||| | |||| | ||||||||||| |
|
|
| T |
23396437 |
caaataagcataagagtaaggacattgtggcgctgcaaataaataaacttt |
23396487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 277 - 326
Target Start/End: Original strand, 23396494 - 23396543
Alignment:
| Q |
277 |
cttttgcaagttcatcccaatattcaccatcactagcttcaatatcaaaa |
326 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| | |||||||||||||| |
|
|
| T |
23396494 |
cttttgcaagttcatcccaatattgaccatcaccaacttcaatatcaaaa |
23396543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 364
Target Start/End: Original strand, 48222502 - 48222567
Alignment:
| Q |
299 |
ttcaccatcactagcttcaatatcaaaatcgattccatccaaaacagcatcacctaatggtcttga |
364 |
Q |
| |
|
||||||| ||| | ||||||| |||||||| | |||||||| ||| ||||||||||||||||||| |
|
|
| T |
48222502 |
ttcaccaccaccaacttcaatgtcaaaatctacaccatccaacacaacatcacctaatggtcttga |
48222567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 314 - 394
Target Start/End: Complemental strand, 43901341 - 43901261
Alignment:
| Q |
314 |
ttcaatatcaaaatcgattccatccaaaacagcatcacctaatggtcttgaagatgatgtgccacccaaaaagttgttcca |
394 |
Q |
| |
|
||||||||||||||| || ||||| || | |||||| || ||||| | ||||||||| | ||||||||||| |||||||| |
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|
| T |
43901341 |
ttcaatatcaaaatcaataccatctaatatagcatcgccaaatggacgtgaagatgaatttccacccaaaaacttgttcca |
43901261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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