View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11005_low_5 (Length: 452)
Name: NF11005_low_5
Description: NF11005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11005_low_5 |
 | |
|
| [»] scaffold0300 (1 HSPs) |
| | |
|
| [»] scaffold0140 (1 HSPs) |
| | |
|
| [»] scaffold0121 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 418; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 1 - 438
Target Start/End: Original strand, 3437100 - 3437537
Alignment:
| Q |
1 |
cttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtttca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3437100 |
cttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtttca |
3437199 |
T |
|
| Q |
101 |
acaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccatcaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
3437200 |
acaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagcagttgaccaccatactttgtctttagatgacagccatcaa |
3437299 |
T |
|
| Q |
201 |
ccccaataaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaaagatccaaacctgggttgtaatcctggatctggcct |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3437300 |
ccccaataaatggcctacatccatttgtaaacccttttttgcatccatcaaaacaaaagtaaaaagatccaaacctgggttgtaatcctggatctggcct |
3437399 |
T |
|
| Q |
301 |
atcaacagtgatactcaccctgtttccaggacacactcttttaagttcagcagcatatctccttatcattgagtattgacaatcagcatcaccctcaaca |
400 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3437400 |
atcaacattgatactcacactgtttccaggacacactcttttaagttcagcagcatatctccttatcattgagtattgacaatcagcatcaccctcaaca |
3437499 |
T |
|
| Q |
401 |
attttctgagctatctgttttgctttccacgccctacc |
438 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3437500 |
attttctgagctatctgttttgctttccacgccctacc |
3437537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 261
Target Start/End: Original strand, 14798952 - 14799118
Alignment:
| Q |
95 |
gtttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagc |
194 |
Q |
| |
|
|||||||||| ||||| || | ||||||||| || |||||||| ||||| || ||||| | | | |||||| ||||| |||||||| || ||||| | |
|
|
| T |
14798952 |
gtttcaacaacaccaaaagctaaaggaaagtattgatcatttggatctcttcctacagccaccaacaattgacctccatattttgtcttcaggtgacacc |
14799051 |
T |
|
| Q |
195 |
catcaaccccaataaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagta |
261 |
Q |
| |
|
||||||| ||||||||||| |||||| || | || || || ||||| || |||||||| || ||||| |
|
|
| T |
14799052 |
catcaacaccaataaatggtctacatgcactagtgaatccctttttacatccatcaaagcagaagta |
14799118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 261
Target Start/End: Original strand, 15245944 - 15246110
Alignment:
| Q |
95 |
gtttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagc |
194 |
Q |
| |
|
|||||||||| ||||| || | ||||||||| || |||||||| ||||| || ||||| | | | |||||| ||||| |||||||| || ||||| | |
|
|
| T |
15245944 |
gtttcaacaacaccaaaagctaaaggaaagtattgatcatttggatctcttcctacagccaccaacaattgacctccatattttgtcttcaggtgacacc |
15246043 |
T |
|
| Q |
195 |
catcaaccccaataaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagta |
261 |
Q |
| |
|
||||||| ||||||||||| |||||| || | || || || ||||| || |||||||| || ||||| |
|
|
| T |
15246044 |
catcaacaccaataaatggtctacatgcactagtgaatccctttttacatccatcaaagcagaagta |
15246110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 414; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Complemental strand, 46240379 - 46239938
Alignment:
| Q |
1 |
cttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtttca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46240379 |
cttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtttca |
46240280 |
T |
|
| Q |
101 |
acaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccatcaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
46240279 |
acaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagcagttgacccccatactttgtctttagatgacaaccatcaa |
46240180 |
T |
|
| Q |
201 |
ccccaataaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaaagatccaaacctgggttgtaatcctggatctggcct |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46240179 |
ccccaataaatggcctacatccatttgtaaacccttttttgcaaccatcaaaacaaaagtaaaaagatccaaacctgggttgtaatcctggatctggcct |
46240080 |
T |
|
| Q |
301 |
atcaacagtgatactcaccctgtttccaggacacactcttttaagttcagcagcatatctccttatcattgagtattgacaatcagcatcaccctcaaca |
400 |
Q |
| |
|
||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46240079 |
atcaacattgatactcacactatttccaggacacactcttttaagttcagcagcatatctccttatcattgagtattgacaatcagcatcaccctcaaca |
46239980 |
T |
|
| Q |
401 |
attttctgagctatctgttttgctttccacgccctacctttg |
442 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
46239979 |
attttctgagctatctgtttagctttccacgccctacctttg |
46239938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 438
Target Start/End: Complemental strand, 23541773 - 23541336
Alignment:
| Q |
1 |
cttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtttca |
100 |
Q |
| |
|
|||||| |||||||||||||| |||||||| |||| | ||||||||||||| | | |||||||||||| ||||||||| |||| |||| ||||| |
|
|
| T |
23541773 |
cttctgttgatctgatatgaagacatatctcctatcccttccaatgtcatccattaaaagctccatgaaccatttccagctttccctacactttgtttct |
23541674 |
T |
|
| Q |
101 |
acaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccatcaa |
200 |
Q |
| |
|
|| || |||||||| | ||||| || |||||||||||||| ||||||||| | || || ||||||||||||||||||||||||| |||||| ||||| | |
|
|
| T |
23541673 |
actattccaaatgccaatggaaaatattggtcatttgggtccctaccaacaactattagaagttgacccccatactttgtctttaaatgacatccatcta |
23541574 |
T |
|
| Q |
201 |
ccccaataaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaaagatccaaacctgggttgtaatcctggatctggcct |
300 |
Q |
| |
|
|||||| |||||| ||||| ||||| | || ||||| || |||||||||||||||||||| ||||| |||||||||||||| | | ||| ||| || |
|
|
| T |
23541573 |
ccccaacaaatggtctacacccattgatgaaacctttcttacagccatcaaaacaaaagtagaaagaaccaaacctgggttggattgatggggttggtct |
23541474 |
T |
|
| Q |
301 |
atcaacagtgatactcaccctgtttccaggacacactcttttaagttcagcagcatatctccttatcattgagtattgacaatcagcatcaccctcaaca |
400 |
Q |
| |
|
||| ||| | || |||| | ||||||| | ||| ||||||||||| |||||||| |||| ||||| | ||||| | |||||||||||| |||||| |
|
|
| T |
23541473 |
atccacatttatcttcacattatttccagcattcacccttttaagttctgcagcatacctccaaatcatggcatattgcctatcagcatcaccatcaaca |
23541374 |
T |
|
| Q |
401 |
attttctgagctatctgttttgctttccacgccctacc |
438 |
Q |
| |
|
|| ||||||| ||||||||||| ||||| |||||||| |
|
|
| T |
23541373 |
atactctgagcaatctgttttgccttccaagccctacc |
23541336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 8 - 276
Target Start/End: Original strand, 30038144 - 30038412
Alignment:
| Q |
8 |
tgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtttcaacaatgc |
107 |
Q |
| |
|
|||||||||||||| |||||||| ||||||| || || || |||| |||||||| | ||||||| ||||| || || |||||||||||||||| | | |
|
|
| T |
30038144 |
tgatctgatatgaacacatatctcttatcttcacctatatcttccatcagcaactgcgtgaaccatttccaagtttccttgcactcagtttcaactaccc |
30038243 |
T |
|
| Q |
108 |
caaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccatcaaccccaat |
207 |
Q |
| |
|
|||| || || ||||| |||||||||||||||||||| || |||||||| | ||||||||||| || |||| || | || |||||||| || |||| |
|
|
| T |
30038244 |
caaaagctagtggaaaatactggtcatttgggtctcttcctacagcaatcaacagttgacccccgtatcttgttttcaagtggcagccatccactccaac |
30038343 |
T |
|
| Q |
208 |
aaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaaagatccaaacct |
276 |
Q |
| |
|
||| || || || || | | |||||||| || || ||||||||||| || |||||||| |||||||| |
|
|
| T |
30038344 |
aaagggtctgcaagcagatatgaaccctttcttacacccatcaaaacagaaataaaaagacccaaacct |
30038412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 282
Target Start/End: Complemental strand, 34584859 - 34584674
Alignment:
| Q |
97 |
ttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagcca |
196 |
Q |
| |
|
||||||||| ||||| ||||||||| | || |||||||| | ||||| || ||||| || || ||||| || ||||| | ||| || | |||||| ||| |
|
|
| T |
34584859 |
ttcaacaattccaaaagcaagaggataatattggtcattagcatctcttcccacagctatcagaagttgcccgccatattgtgttttcaaatgacatcca |
34584760 |
T |
|
| Q |
197 |
tcaaccccaataaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaaagatccaaacctgggttg |
282 |
Q |
| |
|
|| || || || || || ||||| ||||| ||||||| ||| || || ||||| ||||| |||||||||||||| |||||||| |
|
|
| T |
34584759 |
tctacacctatgaagggtctacaaccattcaagaacccttgtttacaaccttcaaagcaaaaataaaaagatccaaatctgggttg |
34584674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 8 - 282
Target Start/End: Complemental strand, 29878399 - 29878125
Alignment:
| Q |
8 |
tgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtttcaacaatgc |
107 |
Q |
| |
|
|||||||||||||| |||||||| ||||||| || || || |||| |||||||| |||||||| ||||| ||| || |||||||||||||||| | | |
|
|
| T |
29878399 |
tgatctgatatgaacacatatctcttatcttgacctatatcttccatcagcaactgtatgaaccatttccaactttccttgcactcagtttcaactaccc |
29878300 |
T |
|
| Q |
108 |
caaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccatcaaccccaat |
207 |
Q |
| |
|
|||| || || ||||| |||||||||||||||||||| || |||||||| | ||||| |||||||| |||| || | || |||||||| || |||| |
|
|
| T |
29878299 |
caaaagctagtggaaaatactggtcatttgggtctcttcctacagcaatcaacagttgccccccatatcttgttttcaagtggcagccatccactccaac |
29878200 |
T |
|
| Q |
208 |
aaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaaagatccaaacctgggttg |
282 |
Q |
| |
|
||| || || || || | | |||||||| || || ||||||||||| || |||||||| |||||||| ||||| |
|
|
| T |
29878199 |
aaagggtctgcaagcagatatgaaccctttcttacacccatcaaaacagaaataaaaagacccaaaccttggttg |
29878125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 8 - 282
Target Start/End: Original strand, 3921209 - 3921483
Alignment:
| Q |
8 |
tgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtttcaacaatgc |
107 |
Q |
| |
|
|||||||||||||| |||||||| ||||||| || || || |||| |||||||| |||||||| ||||| ||| || |||||||||||||||| | | |
|
|
| T |
3921209 |
tgatctgatatgaacacatatctcttatcttgacctatatcttccatcagcaactgtatgaaccatttccaactttccttgcactcagtttcaactaccc |
3921308 |
T |
|
| Q |
108 |
caaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccatcaaccccaat |
207 |
Q |
| |
|
|||| || || ||||| |||||||||||||||||||| || |||||||| | ||||| ||||| || |||| || | || |||||||| || |||| |
|
|
| T |
3921309 |
caaaagctagtggaaaatactggtcatttgggtctcttcctacagcaatcaacagttgtcccccttatcttgttttcaagtggcagccatccactccaac |
3921408 |
T |
|
| Q |
208 |
aaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaaagatccaaacctgggttg |
282 |
Q |
| |
|
||| || || || || | | |||||||| || || ||||||||||| || |||||||| |||||||| ||||| |
|
|
| T |
3921409 |
aaagggtctgcaagcagatatgaaccctttcttacacccatcaaaacagaaataaaaagacccaaaccttggttg |
3921483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 8 - 174
Target Start/End: Complemental strand, 6869191 - 6869027
Alignment:
| Q |
8 |
tgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtttcaacaatgc |
107 |
Q |
| |
|
|||||||||||||| |||| |||| ||||| || || || |||| |||||||| ||||||||| ||||| ||| || |||||||||||||||| | | |
|
|
| T |
6869191 |
tgatctgatatgaacacatctctt--atcttgacctatatcttccatcagcaactgcatgaaccatttccaactttccttgcactcagtttcaactaccc |
6869094 |
T |
|
| Q |
108 |
caaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccata |
174 |
Q |
| |
|
|||| || || |||||||||||||||||||||||||| || |||||||| | ||||| |||||||| |
|
|
| T |
6869093 |
caaaagctagtggaaagtactggtcatttgggtctctccctacagcaatcaacagttggcccccata |
6869027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 4497225 - 4497506
Alignment:
| Q |
1 |
cttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtttca |
100 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||| || || ||||||| || || || |||||| ||||| |||||||||||| | | ||| |||| |
|
|
| T |
4497225 |
cttctgttgatctgatatgaagacatatcttttatcatttcctatgtcattcatcaacagctccataaaccatttccagcttgccttactttcaacttca |
4497324 |
T |
|
| Q |
101 |
acaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccatcaa |
200 |
Q |
| |
|
|||| ||||| || || ||||| ||||||||||| ||||| || |||||||| | || ||||| || ||||| || ||||| | || || ||||||| |
|
|
| T |
4497325 |
acaacaccaaaggccagtggaaaatactggtcattggggtcccttccaacagctagcagaagttgtccaccatatttagtcttcaagtggcacccatcaa |
4497424 |
T |
|
| Q |
201 |
ccccaataaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaaagatccaaacctgggttg |
282 |
Q |
| |
|
|||| | ||| || |||||| || | | || ||| | ||||| |||||||| ||||||| ||||| ||||| || ||||| |
|
|
| T |
4497425 |
cccccacaaaaggtctacatgcagctttgaatcctctcttgcatccatcaaaggaaaagtagaaagacccaaatcttggttg |
4497506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 107 - 285
Target Start/End: Original strand, 11318291 - 11318469
Alignment:
| Q |
107 |
ccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccatcaaccccaa |
206 |
Q |
| |
|
|||||||| | |||||| || || |||||||||||||| |||| ||||| || ||||| || ||||| | |||||||||||||| |||||||| || | |
|
|
| T |
11318291 |
ccaaatgctaaaggaaaatattgatcatttgggtctcttgcaactgcaataagaagttgtcctccatatctagtctttagatgacaaccatcaacaccga |
11318390 |
T |
|
| Q |
207 |
taaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaaagatccaaacctgggttgtaa |
285 |
Q |
| |
|
|||| || |||||| | | ||| ||||||||||| |||||||| |||| ||||| ||||||||| || ||||| |
|
|
| T |
11318391 |
taaaaggtctacatgctgtcaaaaatccttttttgcaaccatcaaatgaaaaataaaagcttccaaacctaggctgtaa |
11318469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0300 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0300
Description:
Target: scaffold0300; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 18286 - 18005
Alignment:
| Q |
1 |
cttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtttca |
100 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||| || || || ||||||| || || || |||||| ||||| |||||||||||| | | || |||| |
|
|
| T |
18286 |
cttctgttgatctgatatgaagacatatcttttgtcatttcctatgtcattcatcaacagctccataaaccatttccagcttgccttactttctacttca |
18187 |
T |
|
| Q |
101 |
acaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccatcaa |
200 |
Q |
| |
|
|||| ||||| || || ||||| ||||||||||| ||||| || |||||||| | || ||||| || ||||| || || || | ||| || ||||| | |
|
|
| T |
18186 |
acaacaccaaaggccaggggaaaatactggtcattggggtcccttccaacagctagcagaagttgtccaccatatttggttttcaaatggcacccatcta |
18087 |
T |
|
| Q |
201 |
ccccaataaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaaagatccaaacctgggttg |
282 |
Q |
| |
|
|||| | ||| || |||||| || | | |||||| | |||||||||||||| ||||||| ||||| ||||| |||||||| |
|
|
| T |
18086 |
cccccacaaagggtctacatgcagctttgaaccctctcttgcagccatcaaatgaaaagtagaaagacccaaatctgggttg |
18005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 24676045 - 24676326
Alignment:
| Q |
1 |
cttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtttca |
100 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||| || || || ||||||| || || || |||||| ||||| |||||||||||| | | || |||| |
|
|
| T |
24676045 |
cttctgttgatctgatatgaagacatatcttttgtcatttcctatgtcattcatcaacagctccataaaccatttccagcttgccttactttctacttca |
24676144 |
T |
|
| Q |
101 |
acaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccatcaa |
200 |
Q |
| |
|
|||| ||||| || || ||||| ||||||||||| ||||| || |||||||| | || ||||| || ||||| || || || | ||| || ||||| | |
|
|
| T |
24676145 |
acaacaccaaaggccagtggaaaatactggtcattggggtcccttccaacagctagcagaagttgtccaccatatttggttttcaaatggcacccatcta |
24676244 |
T |
|
| Q |
201 |
ccccaataaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaaagatccaaacctgggttg |
282 |
Q |
| |
|
|||| | ||| || |||||| || | | |||||| | |||||||||||||| ||||||| ||||| ||||| |||||||| |
|
|
| T |
24676245 |
cccccacaaagggtctacatgcagctttgaaccctctcttgcagccatcaaatgaaaagtagaaagacccaaatctgggttg |
24676326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0140 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 119 - 219
Target Start/End: Original strand, 40053 - 40153
Alignment:
| Q |
119 |
ggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccatcaaccccaataaatggcctac |
218 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||| | || ||| |||||||| ||||| |||||||| |||||||| || ||||| ||||||| |
|
|
| T |
40053 |
ggaaaatactggtcatttgggtctctaccaacaacaattaaaagagtacctccatacttggtcttaagatgacacccatcaactcctataaagggcctac |
40152 |
T |
|
| Q |
219 |
a |
219 |
Q |
| |
|
| |
|
|
| T |
40153 |
a |
40153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 36915429 - 36915336
Alignment:
| Q |
8 |
tgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtttcaa |
101 |
Q |
| |
|
|||||||||||||| |||||||| ||||||| || || || |||| ||||||| ||||||||| ||||| ||| || ||||||||||||||| |
|
|
| T |
36915429 |
tgatctgatatgaacacatatctcttatcttgacctatatcttccattagcaactgcatgaaccatttccaactttccttgcactcagtttcaa |
36915336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 282
Target Start/End: Complemental strand, 30964745 - 30964560
Alignment:
| Q |
97 |
ttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagcca |
196 |
Q |
| |
|
||||||||| ||||| ||||||||| | || |||||||| | ||||| || ||||| || || ||||| || ||||| | ||| || | |||||| ||| |
|
|
| T |
30964745 |
ttcaacaattccaaaagcaagaggataatattggtcattagcatctcttcccacagctatcagaagttgcccgccatattgtgttttcaaatgacatcca |
30964646 |
T |
|
| Q |
197 |
tcaaccccaataaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaaagatccaaacctgggttg |
282 |
Q |
| |
|
|| || || || || || ||||| ||||| ||||||| ||| || || ||||| ||||| |||||||||||||| |||||||| |
|
|
| T |
30964645 |
tctacacctatgaagggtctacaaccattcaagaacccttgtttacaaccttcaaagcaaaaataaaaagatccaaatctgggttg |
30964560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0121 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0121
Description:
Target: scaffold0121; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 107 - 285
Target Start/End: Complemental strand, 43607 - 43429
Alignment:
| Q |
107 |
ccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccatcaaccccaa |
206 |
Q |
| |
|
|||||||| | |||||| || || ||||||||| |||| ||||| ||||| || ||||| || ||||| | |||||||||||||| |||||||| || | |
|
|
| T |
43607 |
ccaaatgctaaaggaaaatattgatcatttgggcctcttccaactgcaataagaagttgtcctccatatctagtctttagatgacaaccatcaacaccga |
43508 |
T |
|
| Q |
207 |
taaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaaagatccaaacctgggttgtaa |
285 |
Q |
| |
|
|||| || |||||| | | ||| ||||||||||| |||||||| |||| ||||| ||||||||| || ||||| |
|
|
| T |
43507 |
taaaaggtctacatgctgtcaaaaatccttttttgcaaccatcaaatgaaaaataaaagcttccaaacctaggctgtaa |
43429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 107 - 285
Target Start/End: Original strand, 18131561 - 18131739
Alignment:
| Q |
107 |
ccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccatcaaccccaa |
206 |
Q |
| |
|
|||||||| | |||||| || || ||||||||| |||| ||||| ||||| || ||||| || ||||| | |||||||||||||| |||||||| || | |
|
|
| T |
18131561 |
ccaaatgctaaaggaaaatattgatcatttgggcctcttccaactgcaataagaagttgtcctccatatctagtctttagatgacaaccatcaacaccga |
18131660 |
T |
|
| Q |
207 |
taaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaaagatccaaacctgggttgtaa |
285 |
Q |
| |
|
|||| || |||||| | | ||| ||||||||||| |||||||| |||| ||||| ||||||||| || ||||| |
|
|
| T |
18131661 |
taaaaggtctacatgctgtcaaaaatccttttttgcaaccatcaaatgaaaaataaaagcttccaaacctaggctgtaa |
18131739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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